ViewGene
Locus Name:
GeneID:
Location:

GeneID:910
TrivialName: PA14_04810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04810
PAO1 Ortholog Locus:PA0366
Sequence Length:1431
Protein Length:476
Start: 425683
Stop: 424253
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03755.1|AE004474_7 (AE004474) probable aldehyde dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 474/476 (99%), Positives = 476/476 (100%)
Sequence:
ATGGTCGCCGATATCGCCTACCTGCAGCAGAGCCAGCAGGAAATCAACCAGCTCGAAGCCCTCTTCGCCCGC
CAGCGCGCCGCCTACCTGGCGCAGCCGATGCCCGACGCCACGCAGCGCGTGCAGTGGCTGAAGGCCCTGCGC
GAGCTGCTGTTCAAGGAACAGCAGGCACTGATCGAGGCCATCGACCGGGACTTCAGCGCGCGCTCCGCCGAC
GAGACCCTGCTCGCCGAGATCATGCCCAGCCTGCACGGCATCCACTACGCCGCCAAGCGCGTGAAGAAATGG
ATGAAGCCCGCGCGCCGCGCGGTCGGCCTGCAATTCCAGCCGGCCTCGGCCCAGGTGGTGTACCAGCCGCTG
GGCGTGGTCGGGGTGATCGTGCCTTGGAACTATCCGCTGTTCCTCTCCATCGGCCCGCTGACCGGGGCCCTC
GCCGCCGGCAACCGGGTGATGATCAAGATGAGCGAGTCGACCCCGGCCACCGGGCGCCTGCTCAAGGACCTG
CTGGCGCGGATCTTCCCCGAGGACCAGGTCGCCGTGGTGCTAGGCGAGGTAGACGTCGGCGTGGCCTTTTCC
AAGCTGCCGTTCGACCACCTGCTGTTCACCGGCGCCACCAGCGTCGGCAAGCACGTGATGCGCGCCGCCGCC
GAGAACCTGACCCCGGTCACCCTGGAGCTGGGCGGCAAGTCGCCGGCGATCATCTCCGACAGCGTGCCGATG
AAGGACGCCGCCGAGCGGATCGCCTTCGGCAAGAGCCTCAACGCCGGGCAGACCTGCGTCGCGCCCGACTAC
GTGCTGGTACCGAGCCGGCGCGTCGAGGAATTCGTCAGTCAGTACAAGGAGGTGGTCCAGGGCTTCTTCCCG
CGTCTTTCGGACAACCCCGACTACACCGCGATCATCAACGAGCGCCAGCTCGGCCGCCTCCGGGGCTATCTC
GACGACGCCCGCGAGAAGGGCGCGACCCTCGTCCCGCTGTTCGCCGAAGGCCAGCAACGGCGCCTGCCGCAG
ACGCTGCTGCTGAACGTCAGCGACGACATGAAAGTGATGCAGGAGGAAATCTTCGGCCCGCTGCTGCCGGTG
ATCCCCTACGAGCGCCTGGAAGACGCCCTGGCCTACGTCAACCAGCGCCCGCGACCGCTGGCCCTGTACTAC
TTCGGCTACGACAAGGCGCAGCAGCAGCGCGTGCTGCACGAGACCCACTCAGGCGGTGTGTGTCTGAACGAC
ACCCTGCTGCATGTCGCCCAGGACGACATCCCGTTCGGTGGCGTCGGTCCCTCCGGCATGGGCCACTACCAT
GGCCACGAAGGCTTCCTCACCTTCAGCAAGGCCAAGGGCGTGTTCAGCAAGCCGCGCTTCAACGCCGCGCGA
ATGATCTACCCGCCCTACGGCAAGTCGATCCAGAAGCTCGTCTACAAGCTGTTCGTGCGCTGA
Translation:
MVADIAYLQQSQQEINQLEALFARQRAAYLAQPMPDATQRVQWLKALRELLFKEQQALIEAIDRDFSARSAD
ETLLAEIMPSLHGIHYAAKRVKKWMKPARRAVGLQFQPASAQVVYQPLGVVGVIVPWNYPLFLSIGPLTGAL
AAGNRVMIKMSESTPATGRLLKDLLARIFPEDQVAVVLGEVDVGVAFSKLPFDHLLFTGATSVGKHVMRAAA
ENLTPVTLELGGKSPAIISDSVPMKDAAERIAFGKSLNAGQTCVAPDYVLVPSRRVEEFVSQYKEVVQGFFP
RLSDNPDYTAIINERQLGRLRGYLDDAREKGATLVPLFAEGQQRRLPQTLLLNVSDDMKVMQEEIFGPLLPV
IPYERLEDALAYVNQRPRPLALYYFGYDKAQQQRVLHETHSGGVCLNDTLLHVAQDDIPFGGVGPSGMGHYH
GHEGFLTFSKAKGVFSKPRFNAARMIYPPYGKSIQKLVYKLFVR*
AnnotationID:919GeneID:910
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 05:05:40
Gene Name:
Confidence Code:3
GeneProduct:putative NAD-dependent aldehyde dehydrogenase
Cell Localization:()
Synonyms:PA0366
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:putative conifer aldehyde dehydrogenase
Functional Category Confidence Code:5
COGs:COG1012,pfam00171
Secondary Functional Category(ies):central intermediary metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO53962.1| (AE016857) coniferyl aldehyde dehydrogenase [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 475

 Score =  692 bits (1786), Expect = 0.0
 Identities = 337/468 (72%), Positives = 395/468 (84%)

>gb|AAN70685.1|AE016712_3 (AE016793) conifer aldehyde dehydrogenase, putative [Pseudomonas
           putida KT2440]
          Length = 476

 Score =  660 bits (1702), Expect = 0.0
 Identities = 321/461 (69%), Positives = 381/461 (82%), Gaps = 2/461 (0%)

>gb|AAG24648.1| (AF193866) aldehyde dehydrogenase [Alcanivorax borkumensis]
          Length = 480

 Score =  577 bits (1487), Expect = e-164
 Identities = 278/480 (57%), Positives = 361/480 (75%), Gaps = 4/480 (0%)








 
Structural Features:
COG1012, PutA, NAD-dependent aldehyde dehydrogenases 
[Energy production and conversion]
CD-Length = 472 residues,  93.2% aligned
Score =  344 bits (883), Expect = 1e-95
Identities = 153/446 (34%), Positives = 217/446 (48%), Gaps = 11/446 (2%)

pfam00171, Aldedh, Aldehyde dehydrogenase family. 
CD-Length = 464 residues,  95.5% aligned
Score =  248 bits (635), Expect = 1e-66
Identities = 135/454 (29%), Positives = 214/454 (47%), Gaps = 20/454 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1823




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18965




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33701




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:910_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:910
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1619
                           PA0366_tr
                           translation of PA0366
                           476
                           99.57
                           99.99
                           0
                           2434.0
     

     
     
58489
                           gb|AAG03755.1|AE004474_7
                           (AE004474) probable aldehyde dehydrogenase [Pseudomonas aeruginosa PAO1]
                           476
                           99.57
                           99.99
                           0
                           2434.0
     

     
     
58490
                           gb|AAO53962.1|
                           (AE016857) coniferyl aldehyde dehydrogenase [Pseudomonas syringae pv. tomato str. DC3000]
                           476
                           71.21
                           83.82
                           1
                           1784.0
     

     
     
58491
                           gb|AAN70685.1|AE016712_3
                           (AE016793) conifer aldehyde dehydrogenase, putative [Pseudomonas putida KT2440]
                           490
                           66.12
                           78.57
                           28
                           1699.0
     

     
     
58492
                           gb|AAG24648.1|
                           (AF193866) aldehyde dehydrogenase [Alcanivorax borkumensis]
                           482
                           58.09
                           75.10
                           8
                           1491.0
     

     






      

          
GC ORFID: 43912How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0366Glimmer Score: 

          
Start: 6227025Stop: 6225595

          
Length: 1431


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0366 translation of PA0366Homolog Bit Score 942.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene132 (ORF: BLASTX 454.0), t_PA0366 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGTCGCCGATATCGCCTACCTGCAGCAGAGCCAGCAGGAAATCAACCAGCTCGAAGCCCTCTTCGCCCGC 
CAGCGCGCCGCCTACCTGGCGCAGCCGATGCCCGACGCCACGCAGCGCGTGCAGTGGCTGAAGGCCCTGCGC 
GAGCTGCTGTTCAAGGAACAGCAGGCACTGATCGAGGCCATCGACCGGGACTTCAGCGCGCGCTCCGCCGAC 
GAGACCCTGCTCGCCGAGATCATGCCCAGCCTGCACGGCATCCACTACGCCGCCAAGCGCGTGAAGAAATGG 
ATGAAGCCCGCGCGCCGCGCGGTCGGCCTGCAATTCCAGCCGGCCTCGGCCCAGGTGGTGTACCAGCCGCTG 
GGCGTGGTCGGGGTGATCGTGCCTTGGAACTATCCGCTGTTCCTCTCCATCGGCCCGCTGACCGGGGCCCTC 
GCCGCCGGCAACCGGGTGATGATCAAGATGAGCGAGTCGACCCCGGCCACCGGGCGCCTGCTCAAGGACCTG 
CTGGCGCGGATCTTCCCCGAGGACCAGGTCGCCGTGGTGCTAGGCGAGGTAGACGTCGGCGTGGCCTTTTCC 
AAGCTGCCGTTCGACCACCTGCTGTTCACCGGCGCCACCAGCGTCGGCAAGCACGTGATGCGCGCCGCCGCC 
GAGAACCTGACCCCGGTCACCCTGGAGCTGGGCGGCAAGTCGCCGGCGATCATCTCCGACAGCGTGCCGATG 
AAGGACGCCGCCGAGCGGATCGCCTTCGGCAAGAGCCTCAACGCCGGGCAGACCTGCGTCGCGCCCGACTAC 
GTGCTGGTACCGAGCCGGCGCGTCGAGGAATTCGTCAGTCAGTACAAGGAGGTGGTCCAGGGCTTCTTCCCG 
CGTCTTTCGGACAACCCCGACTACACCGCGATCATCAACGAGCGCCAGCTCGGCCGCCTCCGGGGCTATCTC 
GACGACGCCCGCGAGAAGGGCGCGACCCTCGTCCCGCTGTTCGCCGAAGGCCAGCAACGGCGCCTGCCGCAG 
ACGCTGCTGCTGAACGTCAGCGACGACATGAAAGTGATGCAGGAGGAAATCTTCGGCCCGCTGCTGCCGGTG 
ATCCCCTACGAGCGCCTGGAAGACGCCCTGGCCTACGTCAACCAGCGCCCGCGACCGCTGGCCCTGTACTAC 
TTCGGCTACGACAAGGCGCAGCAGCAGCGCGTGCTGCACGAGACCCACTCAGGCGGTGTGTGTCTGAACGAC 
ACCCTGCTGCATGTCGCCCAGGACGACATCCCGTTCGGTGGCGTCGGTCCCTCCGGCATGGGCCACTACCAT 
GGCCACGAAGGCTTCCTCACCTTCAGCAAGGCCAAGGGCGTGTTCAGCAAGCCGCGCTTCAACGCCGCGCGA 
ATGATCTACCCGCCCTACGGCAAGTCGATCCAGAAGCTCGTCTACAAGCTGTTCGTGCGCTGA