ViewGene
Locus Name:
GeneID:
Location:

GeneID:91
TrivialName: PA14_63100
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63100
PAO1 Ortholog Locus:PA4772
Sequence Length:2817
Protein Length:938
Start: 5630365
Stop: 5633181
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08158.1|AE004890_11 (AE004890) probable ferredoxin [Pseudomonas aeruginosa PAO1]
Identities = 932/938 (99%), Positives = 933/938 (99%)
Sequence:
ATGAGCCTGCCGATTCCCTTTCTCGAGACCGTCGAGCGGCTGATACCGCGCGAACGCCGCTTCGACGACCCG
CTGTCGACCCTGGCCTTCGGCACCGACGCCAGTTTCTACCGGTTGATTCCCAAGCTGGTGCTGCGCGTCGAA
AGCGAGGACGAGGTCGCCGCGATCCTATCCGTCGCCTACCGCGAGCAGGTCCCGGTGACCTTCCGCGCCGCC
GGCACCAGCCTCTCCGGCCAGGCCATCAGCGACTCGGTGCTGCTCGTCCTCGGCGACAACTGGAACGGCCGG
GAAATCCGCGCCGACGGCGCGCAGATCCGCCTGCAGCCGGGTGTCATCGGCGCCCAGGCGAACGCCTGGCTG
GCGCCGTTCGGCCGCAAGATCGGTCCCGACCCGGCCTCGATCAACGCCTGCAAGATCGGCGGCATCGTCGCC
AACAACGCCAGCGGCATGTGCTGCGGCACCGCGCAGAACAGCTACCACACCCTTGCCGGCCTGCGCCTGCTG
CTGGCCGACGGCACCCGCCTGGACAGCGAGGACCCGGCCAGCGTCGCGGCCTTCCGCGCCAGCCACGGCGAG
CTGCTGGAACGGCTCGCCGAACTCGGCCGCGAGACCCGCGCCAACGCCGAACTGGCCGCGAAGATCCGCCAC
AAGTACCGGCTGAAGAACACCACCGGCCTGTCGCTGAACGCGCTGGTCGACTACGACGAGCCGCTGGACATC
CTCACCCACCTGATGGTCGGCTCCGAGGGCACCCTCGGCTTCATCAGCGCGGTGACCTACGACACCGTCCCG
GAACACCCGCACAAGGCCTCGGCGCTGCTGGTTTTCCCCACGGTGGAAACCTGCTGCACGGCGGTCGCGGTG
CTCAAGCGCCAGCCGGTCTCGGCGGTGGAACTGCTCGATCGGCGCAGCCTGCGCTCGGTGGAGAACATGCAG
GGCATGCCGGAATGGGTGAAGAGCCTTTCCGCCGGTGCCTGCGCCCTGCTCATCGAGTCCCGCGCGGCGAGC
CGCACGCTGCTGCACGAACAGCTCGGGCGGATCATGGCCTCCATCGCCGAATATCCGCTGGAGAAGCAGGTC
GACTTCAGCGAAGACCCGGCGGTCTACAACCAGCTCTGGCGCATCCGCAAGGACACCTTCCCGGCTGTCGGC
GCGGTGCGCGAGACCGGCACCACGGTGATCATCGAGGACGTCACCTTCCCCGTCGAACGACTGGCCGAGGGA
GTCAACCGCCTGATCGAGCTGTTCGACAAGCACCGCTACGATGAGGCGATCCTCTTCGGCCACGCGCTGGAA
GGCAACCTGCACTTCGTCTTCACCCAGGGCTTCGACTCGCCCGAGCAGATCGCCCGCTACTCGGCGTTCATG
GACGACGTGGCGCACCTGGTGGCGGTGGAGTACGGCGGCTCGCTGAAGGCCGAGCATGGCACCGGGCGCAAC
ATGGCGCCGTTCGTCGAACTGGAGTGGGGCGAGGACGCCTATCGCTTGATGTGGCAGCTCAAGCGCCTGCTC
GACCCGCGCGGCATCCTCAACCCGGGTGTGGTCCTCAGCGACGACCCGCAGAGCCACCTGAAGAACCTCAAG
CCGCTGCCGGCCGCCGACGAGATCGTCGACAAGTGCATCGAGTGCGGTTTCTGCGAACCGGTCTGCCCGTCG
CGCGGACTGACCCTCACGCCACGCCAGCGCATCGTCCTGTGGCGCGACATCCAGGCGAAGAAGCGCGCCGGC
GTCGACACCACGGCGCTGGAGCGCGACTACCGCTACCAGGGCATCGACACCTGCGCCGCCACCGGCCTATGC
GCCCAGCGCTGTCCTGTGAACATCAACACCGGCGAGCTGATCCGCAAGCTGCGCGGCGCCGACGTCCGGCAC
GCCGGTGGCGCCACCTGGCTGGCGCGCAACTTTGCCGGCGCCATGCGTGCTGCGCGCTTCGCCCTGCTCGCT
GCCGACGGCGCCCGGCGTCTGCTTGGCGCGCCCCTGCTGGCCAGGGCCAGCCGCGGCCTCAGCCAGGCCAGC
GGCGGCCGCGTGCCGCAATGGACGCCGGCGCTGCCGCAGCCGGTACGCCTGGCGCCGCCGCCCGCCCCGCTC
GACGACGAGCGGCCACGGGTGGTCTATCTCGCCGCCTGCGTCTCGCGCGCCATGGGCCCGGCCTTCGGCGAC
GAAGAGCGCGAGCCGCTGCTGGACAAGACCCGCCGTCTGCTGGAAAAGGCCGGCTACCAGGTGGTGTTCCCG
GATAACCTGGACAACCTCTGCTGCGGCCAGCCGTTCGCGTCCAAGGGGTATGCGAAGCAGGCCGACGACAAG
CGCGACGAGCTGCTCGCCGCCCTGCTCCAGGCCAGCCGCGGCGGCCTCGACCCGATCTACTGCGACACCAGC
CCCTGCACCCTGCGCCTGGTCCAGGGTCTGGACGATCCGCGGCTGCAGATCCACGACCCGGTGAAATTCATC
CGCAGTCACCTGCTCGATCGCCTGGAGTTCATCCCGCAGGACAAACCGGTAGCGGTGCACGTCACCTGCAGC
ACCCAGCACCTCGGCGAGAGCCAGGCGCTGATCGACCTGGTCGGCCGCTGCACCCGCGAGGTGGTGATCCCG
GAAGGCATCCACTGCTGCGGCTTCGCCGGCGACAAGGGCTTCACCACGCCGGAACTGAACGCTCACTCCCTG
CGCAGCCTGAAGGATGCCGTGCAGTTCTGCGAGGAAGGCGTGTCCACCAGCCGTACCTGCGAGATCGGCCTC
AGCGAGCACGGCGGGATCGACTACCGCGGGGTGGTCTACCTGGTGGACCGGGTGACGCAGGCGAAGGGCACG
CCTCGGTAG
Translation:
MSLPIPFLETVERLIPRERRFDDPLSTLAFGTDASFYRLIPKLVLRVESEDEVAAILSVAYREQVPVTFRAA
GTSLSGQAISDSVLLVLGDNWNGREIRADGAQIRLQPGVIGAQANAWLAPFGRKIGPDPASINACKIGGIVA
NNASGMCCGTAQNSYHTLAGLRLLLADGTRLDSEDPASVAAFRASHGELLERLAELGRETRANAELAAKIRH
KYRLKNTTGLSLNALVDYDEPLDILTHLMVGSEGTLGFISAVTYDTVPEHPHKASALLVFPTVETCCTAVAV
LKRQPVSAVELLDRRSLRSVENMQGMPEWVKSLSAGACALLIESRAASRTLLHEQLGRIMASIAEYPLEKQV
DFSEDPAVYNQLWRIRKDTFPAVGAVRETGTTVIIEDVTFPVERLAEGVNRLIELFDKHRYDEAILFGHALE
GNLHFVFTQGFDSPEQIARYSAFMDDVAHLVAVEYGGSLKAEHGTGRNMAPFVELEWGEDAYRLMWQLKRLL
DPRGILNPGVVLSDDPQSHLKNLKPLPAADEIVDKCIECGFCEPVCPSRGLTLTPRQRIVLWRDIQAKKRAG
VDTTALERDYRYQGIDTCAATGLCAQRCPVNINTGELIRKLRGADVRHAGGATWLARNFAGAMRAARFALLA
ADGARRLLGAPLLARASRGLSQASGGRVPQWTPALPQPVRLAPPPAPLDDERPRVVYLAACVSRAMGPAFGD
EEREPLLDKTRRLLEKAGYQVVFPDNLDNLCCGQPFASKGYAKQADDKRDELLAALLQASRGGLDPIYCDTS
PCTLRLVQGLDDPRLQIHDPVKFIRSHLLDRLEFIPQDKPVAVHVTCSTQHLGESQALIDLVGRCTREVVIP
EGIHCCGFAGDKGFTTPELNAHSLRSLKDAVQFCEEGVSTSRTCEIGLSEHGGIDYRGVVYLVDRVTQAKGT
PR*
AnnotationID:101GeneID:91
AnnotatorUID: diggins
Modification Date/Time: 2005-03-09 11:11:00
Gene Name:
Confidence Code:3
GeneProduct:putative ferredoxin
Cell Localization:()
Synonyms:PA4772
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:putative oxidoreductase/iron-sulfur cluster-binding protein
Functional Category Confidence Code:5
COGs:COG0277,pfam02913,COG0247
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70309.1|AE016671_10 (AE016791) D-lactate dehydrogenase, putative [Pseudomonas putida
           KT2440]
          Length = 936

 Score = 1553 bits (4020), Expect = 0.0
 Identities = 762/934 (81%), Positives = 835/934 (89%)

>gb|AAO07727.1|AE016810_230 (AE016810) Fe-S oxidoreductase [Vibrio vulnificus CMCP6]
          Length = 946

 Score = 1003 bits (2594), Expect = 0.0
 Identities = 503/920 (54%), Positives = 650/920 (70%), Gaps = 7/920 (0%)

>gb|AAF96881.1| (AE004425) oxidoreductase/iron-sulfur cluster-binding protein
           [Vibrio cholerae]
          Length = 959

 Score =  996 bits (2574), Expect = 0.0
 Identities = 509/941 (54%), Positives = 655/941 (69%), Gaps = 11/941 (1%)






 
Structural Features:
COG0277, GlcD, FAD/FMN-containing dehydrogenases 
[Energy production and conversion]
CD-Length = 459 residues, 100.0% aligned
Score =  261 bits (668), Expect = 2e-70
Identities = 158/518 (30%), Positives = 226/518 (43%), Gaps = 67/518 (12%)

pfam02913, FAD-oxidase_C, FAD linked oxidases, C-terminal domain.
CD-Length = 247 residues,  99.2% aligned
Score =  207 bits (528), Expect = 4e-54
Identities = 89/251 (35%), Positives = 122/251 (48%), Gaps = 8/251 (3%)

COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion]
CD-Length = 388 residues,  94.8% aligned
Score =  170 bits (432), Expect = 5e-43
Identities = 113/406 (27%), Positives = 165/406 (40%), Gaps = 54/406 (13%)






   
Genomic Context:






   
Comment:


















    ReferenceID:185




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17327




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37698




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:91_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:91
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
170
                           PA4772_tr
                           translation of PA4772
                           938
                           99.36
                           99.46
                           0
                           4836.0
     

     
     
14306
                           gb|AAG08158.1|AE004890_11
                           (AE004890) probable ferredoxin [Pseudomonas aeruginosa PAO1]
                           938
                           99.36
                           99.46
                           0
                           4836.0
     

     
     
14307
                           gb|AAN70309.1|AE016671_10
                           (AE016791) D-lactate dehydrogenase, putative [Pseudomonas putida KT2440]
                           940
                           81.27
                           88.93
                           6
                           4019.0
     

     
     
14310
                           gb|AAF96881.1|
                           (AE004425) oxidoreductase/iron-sulfur cluster-binding protein [Vibrio cholerae O1 biovar eltor str. N16961]
                           966
                           53.20
                           68.32
                           35
                           2589.0
     

     
     
14308
                           gb|AAO07727.1|AE016810_230
                           (AE016810) Fe-S oxidoreductase [Vibrio vulnificus CMCP6]
                           957
                           53.08
                           68.96
                           30
                           2602.0
     

     






      

          
GC ORFID: 43093How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4772Glimmer Score: 

          
Start: 4894045Stop: 4896861

          
Length: 2817


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4772 translation of PA4772Homolog Bit Score 1867.0

          
Other Homologs:  t_PA4772 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCTGCCGATTCCCTTTCTCGAGACCGTCGAGCGGCTGATACCGCGCGAACGCCGCTTCGACGACCCG 
CTGTCGACCCTGGCCTTCGGCACCGACGCCAGTTTCTACCGGTTGATTCCCAAGCTGGTGCTGCGCGTCGAA 
AGCGAGGACGAGGTCGCCGCGATCCTATCCGTCGCCTACCGCGAGCAGGTCCCGGTGACCTTCCGCGCCGCC 
GGCACCAGCCTCTCCGGCCAGGCCATCAGCGACTCGGTGCTGCTCGTCCTCGGCGACAACTGGAACGGCCGG 
GAAATCCGCGCCGACGGCGCGCAGATCCGCCTGCAGCCGGGTGTCATCGGCGCCCAGGCGAACGCCTGGCTG 
GCGCCGTTCGGCCGCAAGATCGGTCCCGACCCGGCCTCGATCAACGCCTGCAAGATCGGCGGCATCGTCGCC 
AACAACGCCAGCGGCATGTGCTGCGGCACCGCGCAGAACAGCTACCACACCCTTGCCGGCCTGCGCCTGCTG 
CTGGCCGACGGCACCCGCCTGGACAGCGAGGACCCGGCCAGCGTCGCGGCCTTCCGCGCCAGCCACGGCGAG 
CTGCTGGAACGGCTCGCCGAACTCGGCCGCGAGACCCGCGCCAACGCCGAACTGGCCGCGAAGATCCGCCAC 
AAGTACCGGCTGAAGAACACCACCGGCCTGTCGCTGAACGCGCTGGTCGACTACGACGAGCCGCTGGACATC 
CTCACCCACCTGATGGTCGGCTCCGAGGGCACCCTCGGCTTCATCAGCGCGGTGACCTACGACACCGTCCCG 
GAACACCCGCACAAGGCCTCGGCGCTGCTGGTTTTCCCCACGGTGGAAACCTGCTGCACGGCGGTCGCGGTG 
CTCAAGCGCCAGCCGGTCTCGGCGGTGGAACTGCTCGATCGGCGCAGCCTGCGCTCGGTGGAGAACATGCAG 
GGCATGCCGGAATGGGTGAAGAGCCTTTCCGCCGGTGCCTGCGCCCTGCTCATCGAGTCCCGCGCGGCGAGC 
CGCACGCTGCTGCACGAACAGCTCGGGCGGATCATGGCCTCCATCGCCGAATATCCGCTGGAGAAGCAGGTC 
GACTTCAGCGAAGACCCGGCGGTCTACAACCAGCTCTGGCGCATCCGCAAGGACACCTTCCCGGCTGTCGGC 
GCGGTGCGCGAGACCGGCACCACGGTGATCATCGAGGACGTCACCTTCCCCGTCGAACGACTGGCCGAGGGA 
GTCAACCGCCTGATCGAGCTGTTCGACAAGCACCGCTACGATGAGGCGATCCTCTTCGGCCACGCGCTGGAA 
GGCAACCTGCACTTCGTCTTCACCCAGGGCTTCGACTCGCCCGAGCAGATCGCCCGCTACTCGGCGTTCATG 
GACGACGTGGCGCACCTGGTGGCGGTGGAGTACGGCGGCTCGCTGAAGGCCGAGCATGGCACCGGGCGCAAC 
ATGGCGCCGTTCGTCGAACTGGAGTGGGGCGAGGACGCCTATCGCTTGATGTGGCAGCTCAAGCGCCTGCTC 
GACCCGCGCGGCATCCTCAACCCGGGTGTGGTCCTCAGCGACGACCCGCAGAGCCACCTGAAGAACCTCAAG 
CCGCTGCCGGCCGCCGACGAGATCGTCGACAAGTGCATCGAGTGCGGTTTCTGCGAACCGGTCTGCCCGTCG 
CGCGGACTGACCCTCACGCCACGCCAGCGCATCGTCCTGTGGCGCGACATCCAGGCGAAGAAGCGCGCCGGC 
GTCGACACCACGGCGCTGGAGCGCGACTACCGCTACCAGGGCATCGACACCTGCGCCGCCACCGGCCTATGC 
GCCCAGCGCTGTCCTGTGAACATCAACACCGGCGAGCTGATCCGCAAGCTGCGCGGCGCCGACGTCCGGCAC 
GCCGGTGGCGCCACCTGGCTGGCGCGCAACTTTGCCGGCGCCATGCGTGCTGCGCGCTTCGCCCTGCTCGCT 
GCCGACGGCGCCCGGCGTCTGCTTGGCGCGCCCCTGCTGGCCAGGGCCAGCCGCGGCCTCAGCCAGGCCAGC 
GGCGGCCGCGTGCCGCAATGGACGCCGGCGCTGCCGCAGCCGGTACGCCTGGCGCCGCCGCCCGCCCCGCTC 
GACGACGAGCGGCCACGGGTGGTCTATCTCGCCGCCTGCGTCTCGCGCGCCATGGGCCCGGCCTTCGGCGAC 
GAAGAGCGCGAGCCGCTGCTGGACAAGACCCGCCGTCTGCTGGAAAAGGCCGGCTACCAGGTGGTGTTCCCG 
GATAACCTGGACAACCTCTGCTGCGGCCAGCCGTTCGCGTCCAAGGGGTATGCGAAGCAGGCCGACGACAAG 
CGCGACGAGCTGCTCGCCGCCCTGCTCCAGGCCAGCCGCGGCGGCCTCGACCCGATCTACTGCGACACCAGC 
CCCTGCACCCTGCGCCTGGTCCAGGGTCTGGACGATCCGCGGCTGCAGATCCACGACCCGGTGAAATTCATC 
CGCAGTCACCTGCTCGATCGCCTGGAGTTCATCCCGCAGGACAAACCGGTAGCGGTGCACGTCACCTGCAGC 
ACCCAGCACCTCGGCGAGAGCCAGGCGCTGATCGACCTGGTCGGCCGCTGCACCCGCGAGGTGGTGATCCCG 
GAAGGCATCCACTGCTGCGGCTTCGCCGGCGACAAGGGCTTCACCACGCCGGAACTGAACGCTCACTCCCTG 
CGCAGCCTGAAGGATGCCGTGCAGTTCTGCGAGGAAGGCGTGTCCACCAGCCGTACCTGCGAGATCGGCCTC 
AGCGAGCACGGCGGGATCGACTACCGCGGGGTGGTCTACCTGGTGGACCGGGTGACGCAGGCGAAGGGCACG 
CCTCGGTAG