ViewGene
Locus Name:
GeneID:
Location:

GeneID:909
TrivialName: PA14_68300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68300
PAO1 Ortholog Locus:PA5170
Sequence Length:1449
Protein Length:482
Start: 6093086
Stop: 6094534
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAA25719.1| (M33223) membrane protein ArcD [Pseudomonas aeruginosa]
Identities = 480/482 (99%), Positives = 481/482 (99%)
Sequence:
ATGTCCCAAGAATCCAGCCAAAAACTCCGACTAGGAGCGCTAACGGCTCTGGTTGTCGGCTCGATGATCGGA
GGGGGCATCTTCTCCCTTCCGCAAAACATGGCAGCCAGCGCCGACGTCGGCGCCGTCCTGATCGGATGGGCG
ATCACCGCCGTCGGCATGCTCACCCTCGCTTTCGTCTTCCAGACCCTCGCCAACCGCAAGCCCGAACTCGAC
GGCGGCGTGTACGCCTACGCCAAGGCCGGCTTCGGCGACTACATGGGTTTCTCCTCGGCCTGGGGCTACTGG
ATCAGCGCCTGGCTGGGCAACGTCGGCTACTTCGTCCTGTTGTTCAGCACCCTCGGCTACTTCTTCCCGATC
TTCGGCAAGGGCGACACCGTCGCCGCGATCGTCTGCGCCTCGGTCCTGCTCTGGGCCCTGCATTTCCTGGTG
CTGCGCGGGATCAAGGAGGCGGCGTTCATCAACACCGTCACCACCGTGGCCAAGATCGTGCCGCTGTTCCTG
TTCATCCTGATCTGCCTGTTCGCCTTCAAGCTGGACATCTTCACCGCCGACATCTGGGGCAAGAGCAACCCG
GACCTGGGCAGCGTGATGAACCAGGTGCGCAACATGATGCTGGTCACCGTCTGGGTGTTCATCGGCATCGAG
GGCGCGAGCATCTTCTCCTCCCGCGCGGAAAAACGTTCCGACGTCGGCAAGGCCACCGTGATCGGCTTCATC
ACCGTCCTGCTCCTGCTGGTGCTGGTCAACGTGCTGTCCATGGGCGTGATGACCCAGCCGGAACTGGCCAAG
CTGCAGAACCCGTCGATGGCGCTGGTACTCGAGCATGTGGTCGGCCACTGGGGCGCCGTGCTGATCAGCGTC
GGCCTGCTGATCTCGCTGCTGGGCGCGCTGCTCTCCTGGGTGCTGCTGTGCGCCGAGATCATGTTCGCCGCG
GCCAAGGACCACACCATGCCGGAGTTCCTGCGCCGCGAGAACGCCAACCAGGTGCCGGCCAACGCCCTGTGG
CTGACCAACATCTGCGTACAGGTGTTCCTGGTGGTGGTGTTCTTCACCTCGGGCGACCCGGACGGCATGGAC
CCGTACACCAAGATGCTGCTCCTGGCCACCTCGATGATCCTGATTCCGTACTTCTGGTCCGCCGCCTATGGC
CTGCTGTTGACCCTGAAGGGCGAGACCTACGAGAACGATGCCCGCGAACGCAGCAAGGACCTGGTCATCGCC
GGCATCGCTGTGGTCTACGCGGTCTGGCTGCTCTACGCCGGTGGCCTGAAGTACCTGCTGCTGTCCGCCCTG
CTGTATGCGCCCGGCGCGATCCTCTTCGCCAAGGCCAAGCACGAGGTCGGCCAGCCGATCTTCACCGGAATC
GAAAAACTGATCTTCGCCGCAGTCGTCATTGGCGCCCTGGTGGCTGCCTACGGCCTCTACGACGGTTTCCTC
ACCCTCTGA
Translation:
MSQESSQKLRLGALTALVVGSMIGGGIFSLPQNMAASADVGAVLIGWAITAVGMLTLAFVFQTLANRKPELD
GGVYAYAKAGFGDYMGFSSAWGYWISAWLGNVGYFVLLFSTLGYFFPIFGKGDTVAAIVCASVLLWALHFLV
LRGIKEAAFINTVTTVAKIVPLFLFILICLFAFKLDIFTADIWGKSNPDLGSVMNQVRNMMLVTVWVFIGIE
GASIFSSRAEKRSDVGKATVIGFITVLLLLVLVNVLSMGVMTQPELAKLQNPSMALVLEHVVGHWGAVLISV
GLLISLLGALLSWVLLCAEIMFAAAKDHTMPEFLRRENANQVPANALWLTNICVQVFLVVVFFTSGDPDGMD
PYTKMLLLATSMILIPYFWSAAYGLLLTLKGETYENDARERSKDLVIAGIAVVYAVWLLYAGGLKYLLLSAL
LYAPGAILFAKAKHEVGQPIFTGIEKLIFAAVVIGALVAAYGLYDGFLTL*
AnnotationID:918GeneID:909
AnnotatorUID: danlee
Modification Date/Time: 2004-02-03 18:06:27
Gene Name:arcD
Confidence Code:1
GeneProduct:arginine/ornithine antiporter
Cell Localization:(4) Inner membrane protein
Synonyms:
Cell Localization Confidence Code:1
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0531
Secondary Functional Category(ies):Membrane proteins; Transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:
3-gene arginine deiminase cluster arcCBA,
followed by arginine/ornithine antiporter arcD






   
Comment:


















    ReferenceID:1821




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:16994




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI Conserved Domain Search.






    
Reference Type:Blast (text/plain)







    
Data:PA5170_CDS.cgi


    		




 
URL:

















    ReferenceID:18963




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:909
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1617
                           PA5170_tr
                           translation of PA5170
                           482
                           99.58
                           99.79
                           0
                           2436.0
     

     
     
58433
                           gb|AAA25719.1|
                           (M33223) membrane protein ArcD [Pseudomonas aeruginosa]
                           482
                           99.58
                           99.79
                           0
                           2436.0
     

     
     
58434
                           gb|AAG08555.1|AE004930_1
                           (AE004930) arginine/ornithine antiporter [Pseudomonas aeruginosa PAO1]
                           482
                           99.58
                           99.79
                           0
                           2436.0
     

     
     
58435
                           gb|AAN66627.1|AE016290_5
                           (AE016777) arginine/ornithine antiporter [Pseudomonas putida KT2440]
                           482
                           83.81
                           90.45
                           7
                           2079.0
     

     
     
58436
                           gb|AAN66628.1|AE016290_6
                           (AE016777) arginine/ornithine antiporter [Pseudomonas putida KT2440]
                           482
                           74.06
                           85.47
                           7
                           1866.0
     

     






      

          
GC ORFID: 43911How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5170Glimmer Score: 

          
Start: 5356772Stop: 5358220

          
Length: 1449


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5170 translation of PA5170Homolog Bit Score 942.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6690 (ORF: BLASTX 774.0), t_PA1194 (ORF: BLASTX 440.0), t_PA5170 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCCAAGAATCCAGCCAAAAACTCCGACTAGGAGCGCTAACGGCTCTGGTTGTCGGCTCGATGATCGGA 
GGGGGCATCTTCTCCCTTCCGCAAAACATGGCAGCCAGCGCCGACGTCGGCGCCGTCCTGATCGGATGGGCG 
ATCACCGCCGTCGGCATGCTCACCCTCGCTTTCGTCTTCCAGACCCTCGCCAACCGCAAGCCCGAACTCGAC 
GGCGGCGTGTACGCCTACGCCAAGGCCGGCTTCGGCGACTACATGGGTTTCTCCTCGGCCTGGGGCTACTGG 
ATCAGCGCCTGGCTGGGCAACGTCGGCTACTTCGTCCTGTTGTTCAGCACCCTCGGCTACTTCTTCCCGATC 
TTCGGCAAGGGCGACACCGTCGCCGCGATCGTCTGCGCCTCGGTCCTGCTCTGGGCCCTGCATTTCCTGGTG 
CTGCGCGGGATCAAGGAGGCGGCGTTCATCAACACCGTCACCACCGTGGCCAAGATCGTGCCGCTGTTCCTG 
TTCATCCTGATCTGCCTGTTCGCCTTCAAGCTGGACATCTTCACCGCCGACATCTGGGGCAAGAGCAACCCG 
GACCTGGGCAGCGTGATGAACCAGGTGCGCAACATGATGCTGGTCACCGTCTGGGTGTTCATCGGCATCGAG 
GGCGCGAGCATCTTCTCCTCCCGCGCGGAAAAACGTTCCGACGTCGGCAAGGCCACCGTGATCGGCTTCATC 
ACCGTCCTGCTCCTGCTGGTGCTGGTCAACGTGCTGTCCATGGGCGTGATGACCCAGCCGGAACTGGCCAAG 
CTGCAGAACCCGTCGATGGCGCTGGTACTCGAGCATGTGGTCGGCCACTGGGGCGCCGTGCTGATCAGCGTC 
GGCCTGCTGATCTCGCTGCTGGGCGCGCTGCTCTCCTGGGTGCTGCTGTGCGCCGAGATCATGTTCGCCGCG 
GCCAAGGACCACACCATGCCGGAGTTCCTGCGCCGCGAGAACGCCAACCAGGTGCCGGCCAACGCCCTGTGG 
CTGACCAACATCTGCGTACAGGTGTTCCTGGTGGTGGTGTTCTTCACCTCGGGCGACCCGGACGGCATGGAC 
CCGTACACCAAGATGCTGCTCCTGGCCACCTCGATGATCCTGATTCCGTACTTCTGGTCCGCCGCCTATGGC 
CTGCTGTTGACCCTGAAGGGCGAGACCTACGAGAACGATGCCCGCGAACGCAGCAAGGACCTGGTCATCGCC 
GGCATCGCTGTGGTCTACGCGGTCTGGCTGCTCTACGCCGGTGGCCTGAAGTACCTGCTGCTGTCCGCCCTG 
CTGTATGCGCCCGGCGCGATCCTCTTCGCCAAGGCCAAGCACGAGGTCGGCCAGCCGATCTTCACCGGAATC 
GAAAAACTGATCTTCGCCGCAGTCGTCATTGGCGCCCTGGTGGCTGCCTACGGCCTCTACGACGGTTTCCTC 
ACCCTCTGA