ViewGene
Locus Name:
GeneID:
Location:

GeneID:908
TrivialName: PA14_68120
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68120
PAO1 Ortholog Locus:PA5158
Sequence Length:1479
Protein Length:492
Start: 6077850
Stop: 6079328
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08543.1|AE004928_9 (AE004928) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
Identities = 490/492 (99%), Positives = 491/492 (99%)
Sequence:
ATGCCGTTCCCTCTTCTCCATCCCTGGCCGCAGCGATTGGTGCTGGCCTCGGCGATACTGCTGGCCGCCGGC
TGCGTCACTTCCGAAGGCCTGGAACCGAACGCCCGACTGCAACCGGCAGGCGCCCTCCAGGCGGGCAGGAGC
CTGGACGGCGTAGCCCTTTCACCAGCGGCCTGGCCGCGCCAGGACTGGTGGACCGGGCTCGGCGACCGGCAG
CTCGACCAACTGATCGGCGAAGCCCTGCAAGGCACCCCCGACCTGCAGATCGCCGAGGCGCGTGCGCGCCAG
GCGGCGGCAACGGCCCAGGCGCAAGATGCCGCGCGCCAGCCGACGCTGGACGCCAAGGCCAGCTACTCCGGC
ATCCGCGCGCCGACCAGCGTGGCCCCGGCACCGCTCGGCGGCCGCTATTCGGCGATCAAGTACCTGTCGCTC
GGCTTCAACTACGACTTCGACCTCTGGGGCGGCGAGCGCGCCGCCTGGGAAGCCGCCCTCGGCCAGGCCAAT
GCCGCCCGGATCGACAGCCAGGCCGCGCGCATCGGCCTCTCGGCAAGCATCGCCCGCGCCTACAGCGACCTC
GCCCATGCCTTTACCGTGCGCGATCTCGCCGAGGAAGAACTGAAGCGCTCGCAGCGCATGACCGAGCTGAGC
CAGAAGCGCATGAGCGCCGGGCTCGACAGCAAGGTCCAGCTGCAACAGACGCAGACCCAGCTGGCTACCGCC
CGCCAGCAGCTCAGCGCCGCCGAGCAGGACATCGCCAGCGCCCGCATCGCCCTCGCCGTGCTGCTGGGCAAG
GGGCCCGATCGCGGTCTCGAACTGCAGCGCCCGCAACCGCTGAACCCGGCCAGCCTGAGCCTGCCCTCGGTG
CTCCCGGCGGAACTGCTCGGCCGCCGCGCCGACATCGTTGCCGCGCGCTGGCGGGTCGAGGCGGCGCGCCGC
AACATCGACTCGGCGAAGACCGAGTTCTATCCCAACCTCAATCTCGGCGCGATGGCCGGCCTCGCCGCCCTG
CACACCAGCGACGTGTTGCAGGCGCCGAGCCGCTTCTTCCAGGTGGCGCCGGCGATCTCCCTGCCGATCTTC
GACGGTGGCCGCCGCCGCGCCAACCTGGCCGAACGCGACGCCGACTACGACCTGGCCGTCGGCCAGTACAAC
AAGACGCTGGTCCAGGCCCTCGGCGAGGTCAGCGACGACCTCGGCAAGTTGCGCTCCCTGGAGCAGCAGGTG
ATCGACCAGCGCCAGGCCCGCAATATCGCCAGGTCCAACTTCGACCTGGCCATGCGTCGCTACGGCGAAGGC
GTCGGCAGCTACCTCGACGCCCTCAGCGTGCAACAGCAACTGCTGGTCGCCGAACGCCAGCTGGCCAGCCTG
GAGAGCCAGCAGATCGATCTTTCCGTCCAGCTGGTCCAGGCCCTGGGCGGCGGTTTCCAACCCGATTCCCGC
TCCGCTGCGCTCGCTACCGCGAAAGCGCCGGCAGAATGA
Translation:
MPFPLLHPWPQRLVLASAILLAAGCVTSEGLEPNARLQPAGALQAGRSLDGVALSPAAWPRQDWWTGLGDRQ
LDQLIGEALQGTPDLQIAEARARQAAATAQAQDAARQPTLDAKASYSGIRAPTSVAPAPLGGRYSAIKYLSL
GFNYDFDLWGGERAAWEAALGQANAARIDSQAARIGLSASIARAYSDLAHAFTVRDLAEEELKRSQRMTELS
QKRMSAGLDSKVQLQQTQTQLATARQQLSAAEQDIASARIALAVLLGKGPDRGLELQRPQPLNPASLSLPSV
LPAELLGRRADIVAARWRVEAARRNIDSAKTEFYPNLNLGAMAGLAALHTSDVLQAPSRFFQVAPAISLPIF
DGGRRRANLAERDADYDLAVGQYNKTLVQALGEVSDDLGKLRSLEQQVIDQRQARNIARSNFDLAMRRYGEG
VGSYLDALSVQQQLLVAERQLASLESQQIDLSVQLVQALGGGFQPDSRSAALATAKAPAE*
AnnotationID:917GeneID:908
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 14:02:57
Gene Name:
Confidence Code:3
GeneProduct:putative outer membrane protein precursor
Cell Localization:()
Synonyms:opmG
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:putative outer membrane efflux protein
Functional Category Confidence Code:5
COGs:COG1538,pfam02321
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM36315.1| (AE011776) outer membrane efflux protein [Xanthomonas axonopodis
           pv. citri str. 306]
          Length = 496

 Score =  449 bits (1156), Expect = e-125
 Identities = 239/483 (49%), Positives = 320/483 (66%), Gaps = 1/483 (0%)

>gb|AAM40696.1| (AE012239) outer membrane efflux protein [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
          Length = 504

 Score =  441 bits (1134), Expect = e-123
 Identities = 235/482 (48%), Positives = 316/482 (65%), Gaps = 1/482 (0%)






 
Structural Features:
COG1538, TolC, Outer membrane protein 
[Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]
CD-Length = 457 residues,  94.1% aligned
Score =  221 bits (565), Expect = 1e-58
Identities = 165/431 (38%), Positives = 231/431 (53%), Gaps = 1/431 (0%)

pfam02321, OEP, Outer membrane efflux protein.
CD-Length = 188 residues, 100.0% aligned
Score = 80.4 bits (198), Expect = 4e-16
Identities = 57/188 (30%), Positives = 87/188 (46%), Gaps = 1/188 (0%)






   
Genomic Context:






   
Comment:
other possible gene name: yjcP


















    ReferenceID:1819




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18961




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34897




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:908_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:908
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1616
                           PA5158_tr
                           translation of PA5158
                           492
                           99.59
                           99.79
                           0
                           2436.0
     

     
     
58430
                           gb|AAG08543.1|AE004928_9
                           (AE004928) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
                           492
                           99.59
                           99.79
                           0
                           2436.0
     

     
     
58431
                           gb|AAM36315.1|
                           (AE011776) outer membrane efflux protein [Xanthomonas axonopodis pv. citri str. 306]
                           500
                           48.20
                           64.60
                           12
                           1157.0
     

     
     
58432
                           gb|AAM40696.1|
                           (AE012239) outer membrane efflux protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           508
                           47.63
                           63.18
                           20
                           1131.0
     

     






      

          
GC ORFID: 43910How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5158Glimmer Score: 

          
Start: 5341536Stop: 5343014

          
Length: 1479


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5158 translation of PA5158Homolog Bit Score 942.0

          
Other Homologs:  t_PA5158 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGTTCCCTCTTCTCCATCCCTGGCCGCAGCGATTGGTGCTGGCCTCGGCGATACTGCTGGCCGCCGGC 
TGCGTCACTTCCGAAGGCCTGGAACCGAACGCCCGACTGCAACCGGCAGGCGCCCTCCAGGCGGGCAGGAGC 
CTGGACGGCGTAGCCCTTTCACCAGCGGCCTGGCCGCGCCAGGACTGGTGGACCGGGCTCGGCGACCGGCAG 
CTCGACCAACTGATCGGCGAAGCCCTGCAAGGCACCCCCGACCTGCAGATCGCCGAGGCGCGTGCGCGCCAG 
GCGGCGGCAACGGCCCAGGCGCAAGATGCCGCGCGCCAGCCGACGCTGGACGCCAAGGCCAGCTACTCCGGC 
ATCCGCGCGCCGACCAGCGTGGCCCCGGCACCGCTCGGCGGCCGCTATTCGGCGATCAAGTACCTGTCGCTC 
GGCTTCAACTACGACTTCGACCTCTGGGGCGGCGAGCGCGCCGCCTGGGAAGCCGCCCTCGGCCAGGCCAAT 
GCCGCCCGGATCGACAGCCAGGCCGCGCGCATCGGCCTCTCGGCAAGCATCGCCCGCGCCTACAGCGACCTC 
GCCCATGCCTTTACCGTGCGCGATCTCGCCGAGGAAGAACTGAAGCGCTCGCAGCGCATGACCGAGCTGAGC 
CAGAAGCGCATGAGCGCCGGGCTCGACAGCAAGGTCCAGCTGCAACAGACGCAGACCCAGCTGGCTACCGCC 
CGCCAGCAGCTCAGCGCCGCCGAGCAGGACATCGCCAGCGCCCGCATCGCCCTCGCCGTGCTGCTGGGCAAG 
GGGCCCGATCGCGGTCTCGAACTGCAGCGCCCGCAACCGCTGAACCCGGCCAGCCTGAGCCTGCCCTCGGTG 
CTCCCGGCGGAACTGCTCGGCCGCCGCGCCGACATCGTTGCCGCGCGCTGGCGGGTCGAGGCGGCGCGCCGC 
AACATCGACTCGGCGAAGACCGAGTTCTATCCCAACCTCAATCTCGGCGCGATGGCCGGCCTCGCCGCCCTG 
CACACCAGCGACGTGTTGCAGGCGCCGAGCCGCTTCTTCCAGGTGGCGCCGGCGATCTCCCTGCCGATCTTC 
GACGGTGGCCGCCGCCGCGCCAACCTGGCCGAACGCGACGCCGACTACGACCTGGCCGTCGGCCAGTACAAC 
AAGACGCTGGTCCAGGCCCTCGGCGAGGTCAGCGACGACCTCGGCAAGTTGCGCTCCCTGGAGCAGCAGGTG 
ATCGACCAGCGCCAGGCCCGCAATATCGCCAGGTCCAACTTCGACCTGGCCATGCGTCGCTACGGCGAAGGC 
GTCGGCAGCTACCTCGACGCCCTCAGCGTGCAACAGCAACTGCTGGTCGCCGAACGCCAGCTGGCCAGCCTG 
GAGAGCCAGCAGATCGATCTTTCCGTCCAGCTGGTCCAGGCCCTGGGCGGCGGTTTCCAACCCGATTCCCGC 
TCCGCTGCGCTCGCTACCGCGAAAGCGCCGGCAGAATGA