ViewGene
Locus Name:
GeneID:
Location:

GeneID:907
TrivialName: PA14_45870
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45870
PAO1 Ortholog Locus:PA1438
Sequence Length:1446
Protein Length:481
Start: 4076381
Stop: 4074936
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04827.1|AE004573_6 (AE004573) probable two-component sensor [Pseudomonas aeruginosa PAO1]
Identities = 478/481 (99%), Positives = 480/481 (99%)
Sequence:
GTGCGCTGGCGGAGTCGGGCTGAGGTGGGCATGTCCTTGTCGACCCGCCTGGCGGGAATGTTCGCCGGCGCC
GCGGTGGTGATCTTCGCCCTCATCGGCACCATGCTCTATTGCATCCTCGACCGCCAGACCGAGCGCCTGCAG
CAGGGCGAGGTGGACGTGCGCTTCAACATGGTCTCGCGGATGCTCGACCATCCCGACCTGGCCGAGCGCTGG
CCGCACCTGCAGGGCAAGCTGGACAACCTGAGCCAGGAGTACGAGCTGATCCGTTTCTGGATTGACAGCGAC
GACCCGCGCTATCACTACGGGCGCTTCAGCGAACCGGTGCAGCGGCTGATCGCCGATGGCGCCGGCCGCTAC
GAACTGCAGTTGCCGGAGCACCGGTACGCGCTGACTGCGCGGGTCGGCGTGTTGCCGGCGCGCGAGGGGCGG
CCGCGGCTGACCTACGTCACCGCCATCGACAGCGCGGCGTTCCACGAGGCGCGGACCTCCACCGTGAAATGG
CTGCTCGGCCTGTCCGCCCTCGGCGTACTGCTGGCCTCGTTGCTCGGCCACTGGATCGCCCGCCTGGGCCTG
TGGCCGGTGCATCGGCTCTCCGAGGAGGCCCGGCGGATCAGCCCGCGGCAGTTGTCGCAGCGCTTGCAGCTT
TCGCCGCTGCCGGCCGAGCTGCGCGAGCTGGTGGGGGCGTTCAACGGCGCCCTGGACCGCCTGGAGCAGGCC
TACGTGCGCCTGGAGTCGTTCAATGCCGACGTCGCCCACGAGCTGCGCACGCCATTGACCAACCTGATCGGC
CAGACCCAGGTGGCGTTGTCCCGCGAACGCAGCGGCGAACATTACGAAGAGGTCCTGCAATCCAACCTGGAG
GAGCTGGAGCGGCTGCGGGCGATCGTCAACGATATGTTGTTCCTCGCCCGCGCCGACCAGGGACGCCTGGCC
TGCGAGCGTGAGGAAACCTCGCTGGCCGGCGAGATCGCCACCACGGTGGATTTCCTCGAGGTGATCTTCGAC
GAGGCCGGGGTCGGTATCGAGGTGCGCGGCGAGGCCCGCGCGCTGGTCGAGCGCGCCCTGTTCCAGCGGGCG
GTGACCAACCTGCTGTACAACGCCGCCCAGCACACCGCCGCCGGCGGCACGCTGCGGGTCGGCGTCGAGCGG
CGTGGCGACGAAGTGCGGGTGGCGGTGAGCAACCCCGGCGTGCCGATCGCCGACGAGCACCGCAGGCACCTG
TTCGAGCGCTTCTATCGGGTCGACGCGGCGCGCAGCAACAGCGAGGCCAACCATGGCCTCGGCCTGTCCATC
GTCAAGGCGGTGGCGAGCATGCACGGCGGTTCGGTGTTCGTCGACAGCGCGGACGGCTGGAACACCTTCGGC
TTCACCGTGCTGAGCCCCGAGCGACGCGGGTCCGGCGACCGCTTGCCGCTGGGCGAGGGCGATCCGGCACTG
TCCTGA
Translation:
MRWRSRAEVGMSLSTRLAGMFAGAAVVIFALIGTMLYCILDRQTERLQQGEVDVRFNMVSRMLDHPDLAERW
PHLQGKLDNLSQEYELIRFWIDSDDPRYHYGRFSEPVQRLIADGAGRYELQLPEHRYALTARVGVLPAREGR
PRLTYVTAIDSAAFHEARTSTVKWLLGLSALGVLLASLLGHWIARLGLWPVHRLSEEARRISPRQLSQRLQL
SPLPAELRELVGAFNGALDRLEQAYVRLESFNADVAHELRTPLTNLIGQTQVALSRERSGEHYEEVLQSNLE
ELERLRAIVNDMLFLARADQGRLACEREETSLAGEIATTVDFLEVIFDEAGVGIEVRGEARALVERALFQRA
VTNLLYNAAQHTAAGGTLRVGVERRGDEVRVAVSNPGVPIADEHRRHLFERFYRVDAARSNSEANHGLGLSI
VKAVASMHGGSVFVDSADGWNTFGFTVLSPERRGSGDRLPLGEGDPALS*
AnnotationID:916GeneID:907
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 09:09:17
Gene Name:
Confidence Code:3
GeneProduct:putative two-component sensor
Cell Localization:()
Synonyms:PA1438
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:putative heavy metal sensor histidine kinase
Functional Category Confidence Code:5
COGs:COG0642
Secondary Functional Category(ies):signal transduction mechanisms
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54830.1| (AE016860) heavy metal sensor histidine kinase [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 454

 Score =  458 bits (1178), Expect = e-128
 Identities = 237/445 (53%), Positives = 316/445 (71%)

>gb|AAM85867.1|AE013833_5 (AE013833) putative hisitidine protein kinase sensor [Yersinia
           pestis KIM]
          Length = 463

 Score =  335 bits (860), Expect = 3e-91
 Identities = 192/453 (42%), Positives = 281/453 (62%), Gaps = 8/453 (1%)

>emb|CAC90813.1| (AJ414151) putative two-component system sensor protein [Yersinia
           pestis CO92]
          Length = 463

 Score =  333 bits (854), Expect = 1e-90
 Identities = 191/453 (42%), Positives = 280/453 (61%), Gaps = 8/453 (1%)






 
Structural Features:
COG0642, BaeS, Signal transduction histidine kinase 
[Signal transduction mechanisms]
CD-Length = 336 residues,  90.5% aligned
Score =  138 bits (348), Expect = 1e-33
Identities = 103/314 (32%), Positives = 158/314 (50%), Gaps = 14/314 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14255




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18959




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37418




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:907_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:907
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1612
                           PA1438_tr
                           translation of PA1438
                           481
                           99.37
                           99.79
                           0
                           2436.0
     

     
     
58420
                           gb|AAG04827.1|AE004573_6
                           (AE004573) probable two-component sensor [Pseudomonas aeruginosa PAO1]
                           481
                           99.16
                           99.79
                           0
                           2433.0
     

     
     
58421
                           gb|AAO54830.1|
                           (AE016860) heavy metal sensor histidine kinase [Pseudomonas syringae pv. tomato str. DC3000]
                           486
                           50.41
                           66.87
                           37
                           1173.0
     

     
     
58422
                           gb|AAM85867.1|AE013833_5
                           (AE013833) putative hisitidine protein kinase sensor [Yersinia pestis KIM]
                           490
                           40.00
                           58.16
                           36
                           862.0
     

     
     
58423
                           emb|CAC90813.1|
                           (AJ414151) putative two-component system sensor protein [Yersinia pestis CO92]
                           490
                           39.79
                           57.95
                           36
                           856.0
     

     






      

          
GC ORFID: 43909How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1438Glimmer Score: 

          
Start: 877528Stop: 878973

          
Length: 1446


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1438 translation of PA1438Homolog Bit Score 942.0

          
Other Homologs:  t_PA2810 (ORF: BLASTX 242.0), t_PA4886 (ORF: BLASTX 201.0), t_PA2524 (ORF: BLASTX 201.0), t_PA1438 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCGCTGGCGGAGTCGGGCTGAGGTGGGCATGTCCTTGTCGACCCGCCTGGCGGGAATGTTCGCCGGCGCC 
GCGGTGGTGATCTTCGCCCTCATCGGCACCATGCTCTATTGCATCCTCGACCGCCAGACCGAGCGCCTGCAG 
CAGGGCGAGGTGGACGTGCGCTTCAACATGGTCTCGCGGATGCTCGACCATCCCGACCTGGCCGAGCGCTGG 
CCGCACCTGCAGGGCAAGCTGGACAACCTGAGCCAGGAGTACGAGCTGATCCGTTTCTGGATTGACAGCGAC 
GACCCGCGCTATCACTACGGGCGCTTCAGCGAACCGGTGCAGCGGCTGATCGCCGATGGCGCCGGCCGCTAC 
GAACTGCAGTTGCCGGAGCACCGGTACGCGCTGACTGCGCGGGTCGGCGTGTTGCCGGCGCGCGAGGGGCGG 
CCGCGGCTGACCTACGTCACCGCCATCGACAGCGCGGCGTTCCACGAGGCGCGGACCTCCACCGTGAAATGG 
CTGCTCGGCCTGTCCGCCCTCGGCGTACTGCTGGCCTCGTTGCTCGGCCACTGGATCGCCCGCCTGGGCCTG 
TGGCCGGTGCATCGGCTCTCCGAGGAGGCCCGGCGGATCAGCCCGCGGCAGTTGTCGCAGCGCTTGCAGCTT 
TCGCCGCTGCCGGCCGAGCTGCGCGAGCTGGTGGGGGCGTTCAACGGCGCCCTGGACCGCCTGGAGCAGGCC 
TACGTGCGCCTGGAGTCGTTCAATGCCGACGTCGCCCACGAGCTGCGCACGCCATTGACCAACCTGATCGGC 
CAGACCCAGGTGGCGTTGTCCCGCGAACGCAGCGGCGAACATTACGAAGAGGTCCTGCAATCCAACCTGGAG 
GAGCTGGAGCGGCTGCGGGCGATCGTCAACGATATGTTGTTCCTCGCCCGCGCCGACCAGGGACGCCTGGCC 
TGCGAGCGTGAGGAAACCTCGCTGGCCGGCGAGATCGCCACCACGGTGGATTTCCTCGAGGTGATCTTCGAC 
GAGGCCGGGGTCGGTATCGAGGTGCGCGGCGAGGCCCGCGCGCTGGTCGAGCGCGCCCTGTTCCAGCGGGCG 
GTGACCAACCTGCTGTACAACGCCGCCCAGCACACCGCCGCCGGCGGCACGCTGCGGGTCGGCGTCGAGCGG 
CGTGGCGACGAAGTGCGGGTGGCGGTGAGCAACCCCGGCGTGCCGATCGCCGACGAGCACCGCAGGCACCTG 
TTCGAGCGCTTCTATCGGGTCGACGCGGCGCGCAGCAACAGCGAGGCCAACCATGGCCTCGGCCTGTCCATC 
GTCAAGGCGGTGGCGAGCATGCACGGCGGTTCGGTGTTCGTCGACAGCGCGGACGGCTGGAACACCTTCGGC 
TTCACCGTGCTGAGCCCCGAGCGACGCGGGTCCGGCGACCGCTTGCCGCTGGGCGAGGGCGATCCGGCACTG 
TCCTGA