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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG08510.1|AE004925_8 (AE004925) two-component response regulator NtrC [Pseudomonas aeruginosa PAO1]
Identities = 476/476 (100%), Positives = 476/476 (100%)
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Sequence:
ATGAGCCGATCAGAGACCGTCTGGATCGTCGACGACGACCGCTCCATCCGCTGGGTACTGGAAAAGGCCCTG
CAGCAGGAAGGCATGACCACGGTGAGCTTCGACAGCGCCGACAGCGTGATCGGCCGCCTCGGCCGGCAGCAG
CCGGACGTGATCATCTCCGATATCCGCATGCCCGGCGCCAGCGGCCTCGACCTGCTGGCGCAGATCCGCGAA
CTGCATCCGCGCCTACCGGTGATCATCATGACCGCGCATTCCGACCTCGACAGCGCGGTGGCCTCCTACCAG
GGCGGCGCCTTCGAATACCTGCCCAAGCCGTTCGACGTCGACGAGGCGGTCTCCCTGGTCAAGCGCGCCAAC
CAGCACGCCCAAGAGCAGCAGGGCCTGGAGCTGCCGGCGAACCAGGCGCGCACGCCGGAGATCATCGGCGAG
GCGCCGGCGATGCAGGAGGTATTCCGCGCCATCGGCCGCCTCAGCCATTCCAACATCACCGTGCTGATCAAC
GGCGAATCGGGTACCGGCAAGGAGCTGGTCGCCCATGCCCTGCATCGCCACAGCCCGCGCGCAGCCTCGCCA
TTCATCGCGCTGAACATGGCGGCGATCCCCAAGGACCTGATGGAATCCGAGCTGTTCGGCCATGAGAAGGGC
GCCTTCACCGGGGCCGCCGCCCAGCGCCGCGGACGCTTCGAGCAGGCCGATGGCGGCACCCTGTTCCTCGAC
GAGATCGGCGACATGCCGGCCGACACCCAGACCCGCCTGCTGCGCGTCCTGGCCGACGGCGAGTTCTACCGG
GTCGGCGGGCACACGCCGGTGAAGGTCGACGTGAGGATCATCGCCGCCACCCACCAGAACCTGGAAAGCCTG
GTGCGCGACGGCAAGTTCCGCGAGGACCTGTTCCATCGCCTGAACGTGATCCGCATCCACATCCCGCGGCTG
GCCGACCGCCGCGAGGACATCCCGGCGCTGGCCCGGCACTTCCTCAGCCGCGCCGCCCAGGAGCTGGCGGTG
GAACCCAAGCTGCTGAAGGCGGAAACCGAGGAGTACCTGAAGAACCTCGGCTGGCCGGGCAACGTCCGACAA
CTGGAGAACACCTGCCGCTGGATCACCGTGATGGCCTCCGGCCGCGAGGTGCACATCGACGACCTGCCGCCG
GAGCTGCTGACCCAGCCGCAGGACAGCGCGCCGGCGGCGAACTGGGAACAGGCCCTGCGCCAGTGGGCCGAC
CAGGCGCTGGGCCGCGGCCAGTCGAACCTGCTGGACAGCGCCGTGCCGGCCTTCGAACGGATCATGATAGAA
ACCGCCCTCAAGCACACCGCCGGCCGCCGCCGCGATGCCGCCGTGCTGCTCGGCTGGGGCCGCAATACCCTC
ACCCGCAAGATCAAGGAGCTGGGGATGAACGTCGATGGAGCCGACGACGAAGGCGACGACTGA |
Translation:
MSRSETVWIVDDDRSIRWVLEKALQQEGMTTVSFDSADSVIGRLGRQQPDVIISDIRMPGASGLDLLAQIRE
LHPRLPVIIMTAHSDLDSAVASYQGGAFEYLPKPFDVDEAVSLVKRANQHAQEQQGLELPANQARTPEIIGE
APAMQEVFRAIGRLSHSNITVLINGESGTGKELVAHALHRHSPRAASPFIALNMAAIPKDLMESELFGHEKG
AFTGAAAQRRGRFEQADGGTLFLDEIGDMPADTQTRLLRVLADGEFYRVGGHTPVKVDVRIIAATHQNLESL
VRDGKFREDLFHRLNVIRIHIPRLADRREDIPALARHFLSRAAQELAVEPKLLKAETEEYLKNLGWPGNVRQ
LENTCRWITVMASGREVHIDDLPPELLTQPQDSAPAANWEQALRQWADQALGRGQSNLLDSAVPAFERIMIE
TALKHTAGRRRDAAVLLGWGRNTLTRKIKELGMNVDGADDEGDD* |
AnnotationID:913 | GeneID:904 |
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Modification Date/Time: |
2005-03-15 09:09:55 |
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GeneProduct: | two-component response regulator NtrC |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (28) Two-component regulatory systems |
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Alternate Gene Product Name: | itrogen regulation protein NR(I) |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | transcriptional regulator |
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Homology: | >gb|AAO53896.1| (AE016857) nitrogen regulation protein NR(I) [Pseudomonas syringae
pv. tomato str. DC3000]
Length = 478
Score = 867 bits (2240), Expect = 0.0
Identities = 436/476 (91%), Positives = 451/476 (94%)
>gb|AAN70613.1|AE016704_4 (AE016793) two-component response regulator NtrC [Pseudomonas
putida KT2440]
Length = 478
Score = 866 bits (2237), Expect = 0.0
Identities = 437/477 (91%), Positives = 452/477 (94%), Gaps = 1/477 (0%)
>emb|CAC79244.1| (AJ320536) nitrogen regulation protein C [Pseudomonas stutzeri]
Length = 478
Score = 843 bits (2179), Expect = 0.0
Identities = 423/477 (88%), Positives = 448/477 (93%), Gaps = 1/477 (0%) |
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Structural Features: | COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase,
and DNA-binding domains
[Signal transduction mechanisms]
CD-Length = 464 residues, 98.9% aligned
Score = 537 bits (1384), Expect = 1e-153
Identities = 227/470 (48%), Positives = 311/470 (66%), Gaps = 13/470 (2%)
pfam00158, Sigma54_activat, Sigma-54 interaction domain.
CD-Length = 222 residues, 100.0% aligned
Score = 319 bits (819), Expect = 5e-88
Identities = 137/222 (61%), Positives = 172/222 (77%)
COG1221, PspF, Transcriptional regulators containing an AAA-type ATPase domain
and a DNA-binding domain
[Transcription / Signal transduction mechanisms]
CD-Length = 403 residues, 87.8% aligned
Score = 275 bits (704), Expect = 9e-75
Identities = 142/362 (39%), Positives = 199/362 (54%), Gaps = 9/362 (2%)
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GC ORFID: 43906 | How Found: BLASTX |
GC_TrimmedSeqID: 69 | Blast Result ID |
Subject Sequence Name: t_PA5125 | Glimmer Score: |
Start: 5309315 | Stop: 5310745 |
Length: 1431 | |
Start Codon: ATG | Truncated Start: |
Stop Codon: TGA | Truncated Stop: |
Homolog: t_PA5125 translation of PA5125 | Homolog Bit Score 944.0 |
Other Homologs: psyr_15may02_Scaffold6_revised_gene6894 (ORF: BLASTX 867.0), psyr_15may02_Scaffold15_revised_gene2516 (ORF: BLASTX 299.0), psyr_15may02_Scaffold1_revised_gene1290 (ORF: BLASTX 227.0), t_PA4726 (ORF: BLASTX 201.0), t_PA1097 (ORF: BLASTX 192.0), t_PA5511 (ORF: BLASTX 176.0), t_PA2005 (ORF: BLASTX 176.0), t_PA5125 (ORF: GLIMMER) |
GC ORF Sequence |
ATGAGCCGATCAGAGACCGTCTGGATCGTCGACGACGACCGCTCCATCCGCTGGGTACTGGAAAAGGCCCTG CAGCAGGAAGGCATGACCACGGTGAGCTTCGACAGCGCCGACAGCGTGATCGGCCGCCTCGGCCGGCAGCAG CCGGACGTGATCATCTCCGATATCCGCATGCCCGGCGCCAGCGGCCTCGACCTGCTGGCGCAGATCCGCGAA CTGCATCCGCGCCTACCGGTGATCATCATGACCGCGCATTCCGACCTCGACAGCGCGGTGGCCTCCTACCAG GGCGGCGCCTTCGAATACCTGCCCAAGCCGTTCGACGTCGACGAGGCGGTCTCCCTGGTCAAGCGCGCCAAC CAGCACGCCCAAGAGCAGCAGGGCCTGGAGCTGCCGGCGAACCAGGCGCGCACGCCGGAGATCATCGGCGAG GCGCCGGCGATGCAGGAGGTATTCCGCGCCATCGGCCGCCTCAGCCATTCCAACATCACCGTGCTGATCAAC GGCGAATCGGGTACCGGCAAGGAGCTGGTCGCCCATGCCCTGCATCGCCACAGCCCGCGCGCAGCCTCGCCA TTCATCGCGCTGAACATGGCGGCGATCCCCAAGGACCTGATGGAATCCGAGCTGTTCGGCCATGAGAAGGGC GCCTTCACCGGGGCCGCCGCCCAGCGCCGCGGACGCTTCGAGCAGGCCGATGGCGGCACCCTGTTCCTCGAC GAGATCGGCGACATGCCGGCCGACACCCAGACCCGCCTGCTGCGCGTCCTGGCCGACGGCGAGTTCTACCGG GTCGGCGGGCACACGCCGGTGAAGGTCGACGTGAGGATCATCGCCGCCACCCACCAGAACCTGGAAAGCCTG GTGCGCGACGGCAAGTTCCGCGAGGACCTGTTCCATCGCCTGAACGTGATCCGCATCCACATCCCGCGGCTG GCCGACCGCCGCGAGGACATCCCGGCGCTGGCCCGGCACTTCCTCAGCCGCGCCGCCCAGGAGCTGGCGGTG GAACCCAAGCTGCTGAAGGCGGAAACCGAGGAGTACCTGAAGAACCTCGGCTGGCCGGGCAACGTCCGACAA CTGGAGAACACCTGCCGCTGGATCACCGTGATGGCCTCCGGCCGCGAGGTGCACATCGACGACCTGCCGCCG GAGCTGCTGACCCAGCCGCAGGACAGCGCGCCGGCGGCGAACTGGGAACAGGCCCTGCGCCAGTGGGCCGAC CAGGCGCTGGGCCGCGGCCAGTCGAACCTGCTGGACAGCGCCGTGCCGGCCTTCGAACGGATCATGATAGAA ACCGCCCTCAAGCACACCGCCGGCCGCCGCCGCGATGCCGCCGTGCTGCTCGGCTGGGGCCGCAATACCCTC ACCCGCAAGATCAAGGAGCTGGGGATGAACGTCGATGGAGCCGACGACGAAGGCGACGACTGA |
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