ViewGene

Locus Name:
GeneID:
Location:

GeneID:902
TrivialName: PA14_38250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38250
PAO1 Ortholog Locus:PA2032
Sequence Length:1425
Protein Length:474
Start: 3412862
Stop: 3411438
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05420.1|AE004629_9 (AE004629) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 473/474 (99%), Positives = 473/474 (99%)
Sequence:
ATGACCCTTTATCTGCAACTCGCCGAGACCCTCGGTTCGCGCATCGAACAGGGCCTCTACCGTCCGGGCGAC
CGGCTGCCCTCGGTGCGGGCCATGAGCATCGAGCACGGCGTCAGCCTGAGCACCGTGCAACAGGCATACAGG
CTGCTGGAAGATCGCGGGCTGGCCGAGCCGCGGCCGAAGTCCGGCTATTTCGTACCGGTCGCGCGACAGATG
CCGCCGCTGCCGGCGATCGCCCGCCTGGCCCAGCGGCCGGTGGAAATCTCGCAATGGGAGCAGGTGCTGGCC
CTGGTCAGCACGGTACCGCGGCCGGACGTGGTCCAGCTCGGCCGTGGCATGCCGGACATCTCCAGCCCTTCG
CTGAAACCGCTGACCCGCAGCCTGGCCCGGCTCAACCGCCACGCCGACGCCCGTGCGCTGGCCTACGACGGG
ATCCACGGCTCGCCGTTGCTGCGCGAGGAAGTCGCCCGCCTGTTGGTGGACTCCGGCTGTCGGGCCACCGCC
AGCGACGTGGTGATCACCACCGGCTGCCACGAGGCCCTGTCGGTGAGCATCCGCGCGGTGTGCGAACCGGGC
GACATCGTCGCGGTGGAGTCGCCGAGCTTCCATGGCGCCATGCAATCGCTGAAAGGCCTCGGCATGAAGGCC
CTGGAGATCCCCACCGATCCGGTCAACGGCATCAGCCTGGAAGCCCTCGAACTGGCGCTGGAACAGTGGCCG
ATCAAGGCCATCCAGGTGACCCCGAACTGCAACAACCCGCTCGGCTACATCATGCCCGAGTCGCGCAAGCGG
GCGCTGCTGGCCCTGGCCCAGCGCTACGACGTGGCGATCATCGAGGACGATGTCTACGGCGACCTGGcctAC
ACCTATCCGCGCCCGCGCACCATCAAGTCGTACGACGACGATGGCCGGGTGCTGCTCTGCGGGTCGTTCTCC
AAGGTCCTGGCGCCGGGCCTGCGGATCGGCTGGATGGTACCCGGGCGCTACGCCGACCGCGTGCTGCACATG
AAGTACATCAGTACCGGTGCCAGCGCCCTGCAACCGCAACTGGCGATCGCCGAATTCATCGGCAACGGCCAC
TACGAGCCGCACTTGCGGCGCATGCGCGCCCAGTACCAGCGCGGACGCGACCTGATGATCGACTGGGTGGCG
CGCTATTTCCCGGAGGGCACCCGCGCCAGCCGGCCCCAGGGCGGTTTCCTGCTCTGGGTCGAACTGGACGAG
GCGTTCGACACCCTGCGCCTGGACAAGGCCTTGCGCAACCGCGGTGTACAAGTCGCGGTGGGCTGCATCTTC
TCCGCTTCCGGCAAGTACCGGAACTGCCTGCGGATGAACTACGCGGCGTTGCCGACCCCGGCCATCGAGCAG
GCGGTCAGGCGAGTAGGGGAGAGCGCTTGCGAGCTGCTGGAGCCTTGCGAGGCCTGA
Translation:
MTLYLQLAETLGSRIEQGLYRPGDRLPSVRAMSIEHGVSLSTVQQAYRLLEDRGLAEPRPKSGYFVPVARQM
PPLPAIARLAQRPVEISQWEQVLALVSTVPRPDVVQLGRGMPDISSPSLKPLTRSLARLNRHADARALAYDG
IHGSPLLREEVARLLVDSGCRATASDVVITTGCHEALSVSIRAVCEPGDIVAVESPSFHGAMQSLKGLGMKA
LEIPTDPVNGISLEALELALEQWPIKAIQVTPNCNNPLGYIMPESRKRALLALAQRYDVAIIEDDVYGDLAY
TYPRPRTIKSYDDDGRVLLCGSFSKVLAPGLRIGWMVPGRYADRVLHMKYISTGASALQPQLAIAEFIGNGH
YEPHLRRMRAQYQRGRDLMIDWVARYFPEGTRASRPQGGFLLWVELDEAFDTLRLDKALRNRGVQVAVGCIF
SASGKYRNCLRMNYAALPTPAIEQAVRRVGESACELLEPCEA*
AnnotationID:911GeneID:902
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 21:09:31
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, GntR
Cell Localization:()
Synonyms:yjiR
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1167
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70840.1|AE016728_9 (AE016793) transcriptional regulator, GntR family [Pseudomonas
           putida KT2440]
          Length = 496

 Score =  749 bits (1935), Expect = 0.0
 Identities = 366/470 (77%), Positives = 415/470 (88%)

>gb|AAC77296.1| (AE000504) putative regulator [Escherichia coli K12]
          Length = 470

 Score =  537 bits (1383), Expect = e-152
 Identities = 259/470 (55%), Positives = 342/470 (72%)

Structural Features:
COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an 
aminotransferase domain (MocR family) and their eukaryotic orthologs 
[Transcription / Amino acid transport and metabolism]
CD-Length = 459 residues,  99.3% aligned
Score =  411 bits (1058), Expect = 9e-116
Identities = 189/474 (39%), Positives = 261/474 (55%), Gaps = 22/474 (4%)

Genomic Context:
Comment:
ReferenceID:1807
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18949
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32670
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:902_cdd.html
URL:
Homologs By Global Alignment
Gene ID:902

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1602 PA2032_tr translation of PA2032 474 99.78 99.78 0 2441.0
57860 gb|AAG05420.1|AE004629_9 (AE004629) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 474 99.78 99.78 0 2441.0
57862 gb|AAO53650.1| (AE016856) transcriptional regulator, GntR family/aminotransferase, class I [Pseudomonas syringae pv. tomato str. DC3000] 474 74.05 85.44 1 1878.0
57861 gb|AAN70840.1|AE016728_9 (AE016793) transcriptional regulator, GntR family [Pseudomonas putida KT2440] 496 73.99 83.87 22 1934.0
57867 dbj|BAB38725.1| (AP002569) putative regulator [Escherichia coli O157:H7] 474 54.64 71.94 4 1376.0
GC ORFID: 43904How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2032Glimmer Score:
Start: 1541048Stop: 1542472
Length: 1425
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2032 translation of PA2032Homolog Bit Score 944.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3926 (ORF: BLASTX 723.0), t_PA4132 (ORF: BLASTX 340.0), t_PA2032 (ORF: GLIMMER)
GC ORF Sequence
ATGACCCTTTATCTGCAACTCGCCGAGACCCTCGGTTCGCGCATCGAACAGGGCCTCTACCGTCCGGGCGAC
CGGCTGCCCTCGGTGCGGGCCATGAGCATCGAGCACGGCGTCAGCCTGAGCACCGTGCAACAGGCATACAGG
CTGCTGGAAGATCGCGGGCTGGCCGAGCCGCGGCCGAAGTCCGGCTATTTCGTACCGGTCGCGCGACAGATG
CCGCCGCTGCCGGCGATCGCCCGCCTGGCCCAGCGGCCGGTGGAAATCTCGCAATGGGAGCAGGTGCTGGCC
CTGGTCAGCACGGTACCGCGGCCGGACGTGGTCCAGCTCGGCCGTGGCATGCCGGACATCTCCAGCCCTTCG
CTGAAACCGCTGACCCGCAGCCTGGCCCGGCTCAACCGCCACGCCGACGCCCGTGCGCTGGCCTACGACGGG
ATCCACGGCTCGCCGTTGCTGCGCGAGGAAGTCGCCCGCCTGTTGGTGGACTCCGGCTGTCGGGCCACCGCC
AGCGACGTGGTGATCACCACCGGCTGCCACGAGGCCCTGTCGGTGAGCATCCGCGCGGTGTGCGAACCGGGC
GACATCGTCGCGGTGGAGTCGCCGAGCTTCCATGGCGCCATGCAATCGCTGAAAGGCCTCGGCATGAAGGCC
CTGGAGATCCCCACCGATCCGGTCAACGGCATCAGCCTGGAAGCCCTCGAACTGGCGCTGGAACAGTGGCCG
ATCAAGGCCATCCAGGTGACCCCGAACTGCAACAACCCGCTCGGCTACATCATGCCCGAGTCGCGCAAGCGG
GCGCTGCTGGCCCTGGCCCAGCGCTACGACGTGGCGATCATCGAGGACGATGTCTACGGCGACCTGGcctAC
ACCTATCCGCGCCCGCGCACCATCAAGTCGTACGACGACGATGGCCGGGTGCTGCTCTGCGGGTCGTTCTCC
AAGGTCCTGGCGCCGGGCCTGCGGATCGGCTGGATGGTACCCGGGCGCTACGCCGACCGCGTGCTGCACATG
AAGTACATCAGTACCGGTGCCAGCGCCCTGCAACCGCAACTGGCGATCGCCGAATTCATCGGCAACGGCCAC
TACGAGCCGCACTTGCGGCGCATGCGCGCCCAGTACCAGCGCGGACGCGACCTGATGATCGACTGGGTGGCG
CGCTATTTCCCGGAGGGCACCCGCGCCAGCCGGCCCCAGGGCGGTTTCCTGCTCTGGGTCGAACTGGACGAG
GCGTTCGACACCCTGCGCCTGGACAAGGCCTTGCGCAACCGCGGTGTACAAGTCGCGGTGGGCTGCATCTTC
TCCGCTTCCGGCAAGTACCGGAACTGCCTGCGGATGAACTACGCGGCGTTGCCGACCCCGGCCATCGAGCAG
GCGGTCAGGCGAGTAGGGGAGAGCGCTTGCGAGCTGCTGGAGCCTTGCGAGGCCTGA