ViewGene

Locus Name:
GeneID:
Location:

GeneID:901
TrivialName: PA14_45190
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45190
PAO1 Ortholog Locus:PA1487
Sequence Length:1416
Protein Length:471
Start: 4030165
Stop: 4031580
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04876.1|AE004577_11 (AE004577) probable carbohydrate kinase [Pseudomonas aeruginosa PAO1]
Identities = 467/471 (99%), Positives = 471/471 (100%)
Sequence:
ATGCGAATCGCCGCCCTCGACCAGGGAACCACCAGTACCCGCGTGCTGGTCGCCAGCCAGGACGGCAGCGCC
GATATTCAGTTGGCGCTGCGTCACCAGCAACACCATCCGCAGTCCGGTTGGGTCGAGCACGATCCGCTGGAA
CTGCTGGCCAACCTGCAACGCTGCCTGGAGGCCAGCGGCCGGGTCGACGCCATCGGCCTCGCCAACCAGGGC
GAAAGCTGCATGGCCTGGGACGCCCGCAGCGGCGAGCCGTTGTCGCCGCTGATCGTCTGGCAGGACAACCGC
ACCACCCCGCACATCGAGCGTCTACGCGCCAGCGGCGCCGAGGCGCTGGTCCTGGAACGCAGCGGCCTGCCG
CTCGATGCCTATTTCTCGGCCAGCAAGCTGGGCTGGATCGTCGAGCACCTTCCTGCCGCTCGCCGGGCTCTC
GAGGCCGGCCGCCTGCGCCTGGGAACCAGCGACGCCTGGTTTCTCGACCGCTTGTGCGGAACCTTCGCCACC
GACGTCACCACCGCCTCGCGCACCGCATTGATGAACCTCGCCGAGGGCCGCTGGGACCCCGAACTGTGCGCC
CTGTTCGGCGTGCCGATCGAGTGCCTGCCGGAAATCCGCGATACCGTCGGCCATTTCGGGGTGATCGGCAAC
ACTCCGCTGACGGCCTCGGTGGTTGACCAGCAGGCCTCGCTCTACGGTCACGGCTGCCGCCAGCCCGGTGAT
GCGAAGATCACCTTCGGCACCGGCGCCTTCGCCCTGACCCTTAGCGGCGAGCGGATCATCCGCTCGCCGGAG
ACAGGCCTGCTCGCCACCATCGCCTGGCAGATCGATGGCAAGCCGGTGTACGCCATGGACGGCGGGGTCTAC
GATGCCAGCGCCGCAGTCGAGTGGGCCGGGCGTCTTGGCCTGTTCAGCGACTTCTCGGAACTGGCCGGCTTC
GACCGGCCGCCGGCCATCGACCGCGGGCTGGCCTTCGTCCCGGCCTTGTCGGGACTCGCATGCCCGCACTGG
GACCGCAGCGCCGGCGCGATGTGGCTGGGAATGGACGCCGGCACCCGCCGCGAGGACCTCTGCCAGGCCCTG
CTCGAAGGCGTGGTGCTGCGCAGCGCCGAGGTGATCCAGGCGATGGACGGCTACCTGAAGGTCACCGACCGC
CTGTCCATCGACGGCGGCCTGGCGCGCAGCCCCTACTTCGCCCAGTTCCTCGCCGACAGCCTGCAACGGCGC
ATCGTCACCCAGCGCTTCGACGAACTCACCGCCTTCGGTTGCGCCGCCCTTGCCGCGCGGGGCCTCGGCTAC
GAGCTGGCGGAGCCGCGCAACACCCGCACGGAGTTCCAGCCGCGGGTCGACGCCGGCACCGCCCGGCGCTGG
CAGGTGCGTTTCAGCGAAGCGGTGGCGCGCACCCGCGGCTGGCGCTGA
Translation:
MRIAALDQGTTSTRVLVASQDGSADIQLALRHQQHHPQSGWVEHDPLELLANLQRCLEASGRVDAIGLANQG
ESCMAWDARSGEPLSPLIVWQDNRTTPHIERLRASGAEALVLERSGLPLDAYFSASKLGWIVEHLPAARRAL
EAGRLRLGTSDAWFLDRLCGTFATDVTTASRTALMNLAEGRWDPELCALFGVPIECLPEIRDTVGHFGVIGN
TPLTASVVDQQASLYGHGCRQPGDAKITFGTGAFALTLSGERIIRSPETGLLATIAWQIDGKPVYAMDGGVY
DASAAVEWAGRLGLFSDFSELAGFDRPPAIDRGLAFVPALSGLACPHWDRSAGAMWLGMDAGTRREDLCQAL
LEGVVLRSAEVIQAMDGYLKVTDRLSIDGGLARSPYFAQFLADSLQRRIVTQRFDELTAFGCAALAARGLGY
ELAEPRNTRTEFQPRVDAGTARRWQVRFSEAVARTRGWR*
AnnotationID:910GeneID:901
AnnotatorUID: diggins
Modification Date/Time: 2005-05-27 09:09:04
Gene Name:
Confidence Code:3
GeneProduct:putative glycerol kinase
Cell Localization:()
Synonyms:PA1487
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0554,COG1070,pfam00370
Secondary Functional Category(ies):carbon compound metabolism
EC Number:EC 2.7.1.30
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG0554, GlpK, Glycerol kinase [Energy production and conversion]
CD-Length = 499 residues,  98.8% aligned
Score =  553 bits (1427), Expect = 2e-158
Identities = 195/494 (39%), Positives = 274/494 (55%), Gaps = 24/494 (4%)

COG1070, XylB, Sugar (pentulose and hexulose) kinases 
[Carbohydrate transport and metabolism]
CD-Length = 502 residues,  98.4% aligned
Score =  218 bits (557), Expect = 1e-57
Identities = 139/503 (27%), Positives = 205/503 (40%), Gaps = 42/503 (8%)

pfam00370, FGGY_N, FGGY family of carbohydrate kinases, N-terminal domain.
CD-Length = 245 residues,  99.6% aligned
Score =  169 bits (429), Expect = 7e-43
Identities = 69/249 (27%), Positives = 109/249 (43%), Gaps = 24/249 (9%)
Genomic Context:
Comment:
ReferenceID:1805
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18947
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37373
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:901_cdd.html
URL:
Homologs By Global Alignment
Gene ID:901

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1601 PA1487_tr translation of PA1487 471 99.15 99.99 0 2440.0
57859 gb|AAG04876.1|AE004577_11 (AE004577) probable carbohydrate kinase [Pseudomonas aeruginosa PAO1] 471 99.15 99.99 0 2440.0
GC ORFID: 43903How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1487Glimmer Score:
Start: 923744Stop: 922329
Length: 1416
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1487 translation of PA1487Homolog Bit Score 944.0
Other Homologs: t_PA1487 (ORF: GLIMMER)
GC ORF Sequence
ATGCGAATCGCCGCCCTCGACCAGGGAACCACCAGTACCCGCGTGCTGGTCGCCAGCCAGGACGGCAGCGCC
GATATTCAGTTGGCGCTGCGTCACCAGCAACACCATCCGCAGTCCGGTTGGGTCGAGCACGATCCGCTGGAA
CTGCTGGCCAACCTGCAACGCTGCCTGGAGGCCAGCGGCCGGGTCGACGCCATCGGCCTCGCCAACCAGGGC
GAAAGCTGCATGGCCTGGGACGCCCGCAGCGGCGAGCCGTTGTCGCCGCTGATCGTCTGGCAGGACAACCGC
ACCACCCCGCACATCGAGCGTCTACGCGCCAGCGGCGCCGAGGCGCTGGTCCTGGAACGCAGCGGCCTGCCG
CTCGATGCCTATTTCTCGGCCAGCAAGCTGGGCTGGATCGTCGAGCACCTTCCTGCCGCTCGCCGGGCTCTC
GAGGCCGGCCGCCTGCGCCTGGGAACCAGCGACGCCTGGTTTCTCGACCGCTTGTGCGGAACCTTCGCCACC
GACGTCACCACCGCCTCGCGCACCGCATTGATGAACCTCGCCGAGGGCCGCTGGGACCCCGAACTGTGCGCC
CTGTTCGGCGTGCCGATCGAGTGCCTGCCGGAAATCCGCGATACCGTCGGCCATTTCGGGGTGATCGGCAAC
ACTCCGCTGACGGCCTCGGTGGTTGACCAGCAGGCCTCGCTCTACGGTCACGGCTGCCGCCAGCCCGGTGAT
GCGAAGATCACCTTCGGCACCGGCGCCTTCGCCCTGACCCTTAGCGGCGAGCGGATCATCCGCTCGCCGGAG
ACAGGCCTGCTCGCCACCATCGCCTGGCAGATCGATGGCAAGCCGGTGTACGCCATGGACGGCGGGGTCTAC
GATGCCAGCGCCGCAGTCGAGTGGGCCGGGCGTCTTGGCCTGTTCAGCGACTTCTCGGAACTGGCCGGCTTC
GACCGGCCGCCGGCCATCGACCGCGGGCTGGCCTTCGTCCCGGCCTTGTCGGGACTCGCATGCCCGCACTGG
GACCGCAGCGCCGGCGCGATGTGGCTGGGAATGGACGCCGGCACCCGCCGCGAGGACCTCTGCCAGGCCCTG
CTCGAAGGCGTGGTGCTGCGCAGCGCCGAGGTGATCCAGGCGATGGACGGCTACCTGAAGGTCACCGACCGC
CTGTCCATCGACGGCGGCCTGGCGCGCAGCCCCTACTTCGCCCAGTTCCTCGCCGACAGCCTGCAACGGCGC
ATCGTCACCCAGCGCTTCGACGAACTCACCGCCTTCGGTTGCGCCGCCCTTGCCGCGCGGGGCCTCGGCTAC
GAGCTGGCGGAGCCGCGCAACACCCGCACGGAGTTCCAGCCGCGGGTCGACGCCGGCACCGCCCGGCGCTGG
CAGGTGCGTTTCAGCGAAGCGGTGGCGCGCACCCGCGGCTGGCGCTGA