ViewGene

Locus Name:
GeneID:
Location:

GeneID: 900

TrivialName: PA14_03190

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_03190

PAO1 Ortholog Locus: PA0259

Sequence Length: 1443

Protein Length: 480

Start: 282415

Stop: 280973

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG03648.1|AE004464_1 (AE004464) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 465/480 (96%), Positives = 468/480 (97%)

Sequence:

ATGTCCGCTGATGCTTATCACGCTCCGAAAACTTCGCCGCGCCTGGAAACCCTGGATGTGCTCAGCATAGGC
ATGAGCCTGGATGTGTTTCGCCAGGGCCAGGTATGGAAGGCCTTGCAGGAGCAGAATGCGGTGCAGGCCGAG
GCCTTGCATGTCGGCAGCATCCTGCCGATGGACCCGAAGAAGTATCCGACGTCTGCGGATGACAAGGATATG
GCGTATGAAAAGCGCCAAGCGGACGCCCTGGAACTGGGGCTGAAAAACTTTCTGGAGAAATGGCCGATACCA
ACGGTGACGGTGGTGCGTAGTTGGGATCCGAGCACTCCTAACCTACGCTTCACTCCGGAGGAGACGCGGGAA
AGCCTGTCAGTAAAAGTCAATGATCTCCGTGTTCCGGCTGGACTGCATTGGCATCGGATTGCCAATTTGCAG
GATGGCATTATCTGTAACGATACGCCTGAAGGAGTACTGGAGGCGTTGTTCAGTTTGTTCGAACGCAACCCA
GACTTGCCAGCAGTGTTGGTGTACGCCAACGAAGGCTTCAATATGGCCGGTTCCTTATCGAGTCGGGATGTA
CCTTTAAAATCATTAGGGGGAGGTTCTGGCCCACGTGTACCGGGGACCTTGACAGACACCATGGTCGCCCTG
ATCGTCGGCCGCCCCGAGCGGGTCGACTGGCTACGCCAGTTCGCCCCCTACACCAAGGTCAACGAAAACCGG
ATCGACCCCGAGTTCCGTGGCTGGGGCTGGCGCAAGCCGCCGGTGGAGTTCCGCCCCACGCCGTTCATTCCC
CAGCCCTGGACCGAGCGGGCTCTGGAGCAGTGGGATGCGTTGCCGGTGCTGGCCAGGCTGCATCGGCCGGTG
AGTGTGCCGCTGACCCGCCCGGATACCGGCGAACGGCTCAAGCGCGAAGCTCTCACCGCACAACTGGCCGCT
GCCTGGAAGACGGCCAGTGCCGGGCTCAGGCCGGCGCCCGCCCGGCTGTTCTACGACGGCGGGTTGAACGCC
ACGCCGCTGGCCGAACTCACCCCGGCGCTGGGCGCCGCGCAGAGTTCGCTGGACTTGCTGGACTCGCGGGAA
AGCTACGACCTGACCCAGCGCCTGGGCGACACCGGCGCGGCCTCGCCCTTCGTTGGCATCGCCCTGGCGACC
ATGGCCAGCTACCTCAACGGCGACAGCAGCATGGTGATGCCGTTGCGGCGCAAGGACCAGGCGACCCTGATC
GGCATCAGCTCGCCGACGCCTGGGAAGAAGCCCGCTCACGACCCGTTCGGCGTCGACCTGCTGCCGCAGACC
GCCAGCGGCGACGGTCCGCCGCCATCGGCCGACCCGGTGGCGCCCGCCAGTCGGCTCACGACCCGGTTGCCG
CCCGGCGAAGACTATGCCCTGGAAGAGTTCCTGAGCAGCCTCAAACCCAGCACCGACTGGCAGGACGATTTG
TAG

Translation:

MSADAYHAPKTSPRLETLDVLSIGMSLDVFRQGQVWKALQEQNAVQAEALHVGSILPMDPKKYPTSADDKDM
AYEKRQADALELGLKNFLEKWPIPTVTVVRSWDPSTPNLRFTPEETRESLSVKVNDLRVPAGLHWHRIANLQ
DGIICNDTPEGVLEALFSLFERNPDLPAVLVYANEGFNMAGSLSSRDVPLKSLGGGSGPRVPGTLTDTMVAL
IVGRPERVDWLRQFAPYTKVNENRIDPEFRGWGWRKPPVEFRPTPFIPQPWTERALEQWDALPVLARLHRPV
SVPLTRPDTGERLKREALTAQLAAAWKTASAGLRPAPARLFYDGGLNATPLAELTPALGAAQSSLDLLDSRE
SYDLTQRLGDTGAASPFVGIALATMASYLNGDSSMVMPLRRKDQATLIGISSPTPGKKPAHDPFGVDLLPQT
ASGDGPPPSADPVAPASRLTTRLPPGEDYALEEFLSSLKPSTDWQDDL*

AnnotationID:909 GeneID:900

AnnotatorUID: diggins

Modification Date/Time: 2005-03-24 05:05:03

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA0259

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:1803

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:18945

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:900

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

1600 PA0259_tr translation of PA0259 480 96.87 97.50 0 2442.0

57858 gb|AAG03648.1|AE004464_1 (AE004464) hypothetical protein PA0259 [Pseudomonas aeruginosa PAO1] 480 96.87 97.50 0 2442.0

GC ORFID: `43902`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0259`	Glimmer Score:
Start: `6083756`	Stop: `6082314`
Length: `1443`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog: `t_PA0259 translation of PA0259`	Homolog Bit Score `945.0`
Other Homologs: `t_PA0259 (ORF: GLIMMER)`
GC ORF Sequence
ATGTCCGCTGATGCTTATCACGCTCCGAAAACTTCGCCGCGCCTGGAAACCCTGGATGTGCTCAGCATAGGC ATGAGCCTGGATGTGTTTCGCCAGGGCCAGGTATGGAAGGCCTTGCAGGAGCAGAATGCGGTGCAGGCCGAG GCCTTGCATGTCGGCAGCATCCTGCCGATGGACCCGAAGAAGTATCCGACGTCTGCGGATGACAAGGATATG GCGTATGAAAAGCGCCAAGCGGACGCCCTGGAACTGGGGCTGAAAAACTTTCTGGAGAAATGGCCGATACCA ACGGTGACGGTGGTGCGTAGTTGGGATCCGAGCACTCCTAACCTACGCTTCACTCCGGAGGAGACGCGGGAA AGCCTGTCAGTAAAAGTCAATGATCTCCGTGTTCCGGCTGGACTGCATTGGCATCGGATTGCCAATTTGCAG GATGGCATTATCTGTAACGATACGCCTGAAGGAGTACTGGAGGCGTTGTTCAGTTTGTTCGAACGCAACCCA GACTTGCCAGCAGTGTTGGTGTACGCCAACGAAGGCTTCAATATGGCCGGTTCCTTATCGAGTCGGGATGTA CCTTTAAAATCATTAGGGGGAGGTTCTGGCCCACGTGTACCGGGGACCTTGACAGACACCATGGTCGCCCTG ATCGTCGGCCGCCCCGAGCGGGTCGACTGGCTACGCCAGTTCGCCCCCTACACCAAGGTCAACGAAAACCGG ATCGACCCCGAGTTCCGTGGCTGGGGCTGGCGCAAGCCGCCGGTGGAGTTCCGCCCCACGCCGTTCATTCCC CAGCCCTGGACCGAGCGGGCTCTGGAGCAGTGGGATGCGTTGCCGGTGCTGGCCAGGCTGCATCGGCCGGTG AGTGTGCCGCTGACCCGCCCGGATACCGGCGAACGGCTCAAGCGCGAAGCTCTCACCGCACAACTGGCCGCT GCCTGGAAGACGGCCAGTGCCGGGCTCAGGCCGGCGCCCGCCCGGCTGTTCTACGACGGCGGGTTGAACGCC ACGCCGCTGGCCGAACTCACCCCGGCGCTGGGCGCCGCGCAGAGTTCGCTGGACTTGCTGGACTCGCGGGAA AGCTACGACCTGACCCAGCGCCTGGGCGACACCGGCGCGGCCTCGCCCTTCGTTGGCATCGCCCTGGCGACC ATGGCCAGCTACCTCAACGGCGACAGCAGCATGGTGATGCCGTTGCGGCGCAAGGACCAGGCGACCCTGATC GGCATCAGCTCGCCGACGCCTGGGAAGAAGCCCGCTCACGACCCGTTCGGCGTCGACCTGCTGCCGCAGACC GCCAGCGGCGACGGTCCGCCGCCATCGGCCGACCCGGTGGCGCCCGCCAGTCGGCTCACGACCCGGTTGCCG CCCGGCGAAGACTATGCCCTGGAAGAGTTCCTGAGCAGCCTCAAACCCAGCACCGACTGGCAGGACGATTTG TAG