ViewGene
Locus Name:
GeneID:
Location:

GeneID:90
TrivialName: PA14_09180
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09180
PAO1 Ortholog Locus:PA4234
Sequence Length:2838
Protein Length:945
Start: 778062
Stop: 775225
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07622.1|AE004840_8 (AE004840) excinuclease ABC subunit A [Pseudomonas aeruginosa PAO1]
Identities = 945/945 (100%), Positives = 945/945 (100%)
Sequence:
GTGGATAAGATCCTGATTCGTGGGGCGCGTACCCACAACCTGAAGAACGTCGACCTCACACTGCCACGCGAC
AAACTGATCGTGATCACCGGTCTTTCCGGTTCCGGCAAGTCTTCCCTGGCTTTCGACACGCTCTATGCGGAA
GGCCAGCGGCGCTACGTGGAATCCCTCTCGGCCTACGCCCGGCAGTTCCTGTCGATGATGGAGAAGCCGGAC
GTGGACACCATCGAAGGGCTGTCGCCGGCGATTTCCATCGAACAGAAGTCCACTTCCCACAACCCACGCTCC
ACCGTGGGTACGATCACCGAGATCTACGACTACCTGCGCCTGCTTTATGCCCGCGTCGGTACCCCGCGCTGC
CCGGACCACGACATCCCGCTGGAGGCGCAGACCGTCAGCCAGATGGTCGACCAGGTCCTGGCCCTGCCGGAA
GGCAGCAAGCTGATGCTGCTGGCGCCGGTGATCCGCGAGCGCAAGGGCGAGCACCTGGCGGTGTTCGACGAG
ATGCGCGCGCAGGGTTTCGTCCGCGCCCGGGTCGACGGCAAGCTCTACGAACTCGACGAAGTGCCGAAGCTG
GATAAGCAGAAGAAGCACAGCATCGATGTGGTGGTGGACCGCTTCAAGGTTCGCGCGGACCTCCAGCAACGC
CTGGCCGAGTCGTTCGAGACCGCCCTGTCCCTGGCCGACGGTATCGCCCTGGTAGCACCGATGGACGAGGAC
GAGGATGTCGAGGAGATCATCTTCTCGGCGCGCTTCGCCTGCCCGGTCTGCGGCCACTCGATCAGCGAGCTG
GAACCCAAGCTGTTCTCCTTCAACAACCCGGCCGGCGCCTGTCCGACCTGCGACGGCCTCGGCGTGAAGCAA
TTCTTCGACGCGCGCCGGGTGGTCAATGGCGAGTTGACCCTGGCCGAGGGCGCGATCCGCGGCTGGGACCGG
CGCAACGTCTATTACTTCCAGATGCTCGGCTCGCTGGCCCAGCATTACGGCTTCAGCCTGGAAGAACCCTTC
GACGAACTCGGCGCCGAGCACCAGAAGGTGGTGCTCTACGGCTCCGGCCGGGAAAACGTCGACTTCCGCTAT
CTCAACGACCGCGGCGACATCGTCAAGCGTTCGCACCCCTTCGAAGGCATCCTGCCGAACCTTGAGCGGCGC
TACCGCGAGACCGAGTCGGCCACGGTCCGCGAGGAGCTGGCCAAGTTCCTCAGCACCCAGCCCTGCCCGGAT
TGCCACGGTACCCGCCTGCGCCGCGAGGCGCGGCATGTGTGGGTCGGCGACCGGACGCTGCCGGCGATCACC
GCGATGCCGGTCGGCGAGGCCTGCGAGTATGCCGCCGGACTCAGCCTGACCGGCCGCCGTGGCGAGATCGCG
GCGAAAATCCTCAAGGAAATCCGCGACCGCCTGCAATTCCTGGTCAACGTCGGCCTCGACTACCTGACCCTC
GACCGCAGCGCCGACACCCTGTCCGGCGGCGAAGCCCAGCGCATCCGCCTGGCCAGCCAGATCGGCGCCGGC
CTGGTGGGAGTGATGTACATCCTCGACGAACCCTCGATCGGCCTGCACCAACGCGACAACGAACGCCTGCTC
GGCACCCTCACCCACCTGCGCAACCTCGGCAACACGGTGATCGTGGTCGAGCACGACGAGGACGCGATCCGA
CTCGCCGACTACGTCGTCGACATCGGTCCGGGCGCCGGTGTGCACGGCGGCCAGGTAGTGGCGGAAGGTACG
CCCGACCAGGTGATGAACCACCCCGACTCGCTGACCGGCAAGTACCTTTCCGGGCGCAAGAAAATCGCGGTT
CCGGCCAAGCGCACCCCGCGCGACAAGAAGAAGCTGCTGAAGCTGAAAGGCGCCCGCGGCAACAACCTGCAG
AACGTCAACCTGGAAATCCCGGTCGGCCTGTTCACCTGCATCACCGGGGTCTCGGGCTCCGGCAAGTCGACG
CTGATCAACAACACCCTGTTCCCGATCACCGCCACCGCGCTGAACGGCGCGACTACCCTGGAAGTGGCGCCG
TACGACTCGTTCGACGGCCTGCAGCACCTGGACAAGGTGGTCGACATCGACCAGAGCCCGATCGGTCGTACC
CCGCGCTCCAACCCGGCGACCTATACCGGCCTGTTCACGCCGATCCGCGAACTGTTCTCCGGCGTGCCGGAG
GCCCGCTCGCGCGGCTACGGTCCCGGCCGCTTCTCGTTCAACGTCAAGGGCGGCCGTTGCGAGGCCTGCCAG
GGCGACGGCGTGATCAAGGTGGAGATGCACTTCCTGCCGGACATCTACGTTCCCTGCGATGTCTGCAAGGGC
AAGCGCTACAACCGCGAGACCCTGGAGATCCGCTACAAGGGCAAGAGCATCCACGAAGTGCTGGAGATGACC
ATCGAGGAAGCCCGCGAGTTCTTCGACGCCGTCCCCGCCCTGGCGCGCAAGCTGCAGACACTGATGGACGTC
GGCCTGTCCTACATCAAGCTGGGCCAGAGCGCGACCACCCTCTCGGGCGGCGAGGCACAGCGGGTCAAGCTG
TCCCGCGAGCTGTCCAAGCGCGACACCGGCAAGACCCTGTACATCCTCGACGAACCGACCACCGGCCTGCAC
TTCGCCGACATCCAGCAACTGCTCGACGTGCTCCACCGCCTGCGCGACCACGGCAACACCGTGGTGGTGATC
GAGCACAACCTGGACGTGATCAAGACCGCCGACTGGCTGGTCGACCTCGGCCCCGAGGGCGGCTCCAAGGGT
GGCCAGATCATCGCCAACGGCACGCCAGAGCAGGTGGCCGAGATGCCCCAGTCGCACACCGGCCACTTCCTC
AAGCCGCTGCTGGAACGCGATCGCGCCTGA
Translation:
MDKILIRGARTHNLKNVDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSMMEKPD
VDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPRCPDHDIPLEAQTVSQMVDQVLALPE
GSKLMLLAPVIRERKGEHLAVFDEMRAQGFVRARVDGKLYELDEVPKLDKQKKHSIDVVVDRFKVRADLQQR
LAESFETALSLADGIALVAPMDEDEDVEEIIFSARFACPVCGHSISELEPKLFSFNNPAGACPTCDGLGVKQ
FFDARRVVNGELTLAEGAIRGWDRRNVYYFQMLGSLAQHYGFSLEEPFDELGAEHQKVVLYGSGRENVDFRY
LNDRGDIVKRSHPFEGILPNLERRYRETESATVREELAKFLSTQPCPDCHGTRLRREARHVWVGDRTLPAIT
AMPVGEACEYAAGLSLTGRRGEIAAKILKEIRDRLQFLVNVGLDYLTLDRSADTLSGGEAQRIRLASQIGAG
LVGVMYILDEPSIGLHQRDNERLLGTLTHLRNLGNTVIVVEHDEDAIRLADYVVDIGPGAGVHGGQVVAEGT
PDQVMNHPDSLTGKYLSGRKKIAVPAKRTPRDKKKLLKLKGARGNNLQNVNLEIPVGLFTCITGVSGSGKST
LINNTLFPITATALNGATTLEVAPYDSFDGLQHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFSGVPE
ARSRGYGPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDVCKGKRYNRETLEIRYKGKSIHEVLEMT
IEEAREFFDAVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVKLSRELSKRDTGKTLYILDEPTTGLH
FADIQQLLDVLHRLRDHGNTVVVIEHNLDVIKTADWLVDLGPEGGSKGGQIIANGTPEQVAEMPQSHTGHFL
KPLLERDRA*
AnnotationID:100GeneID:90
AnnotatorUID: diggins
Modification Date/Time: 2005-04-01 09:09:24
Gene Name:uvrA
Confidence Code:2
GeneProduct:excinuclease ABC subunit A
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:excision nuclease subunit A
Functional Category Confidence Code:5
COGs:COG0178
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66113.1|AE016239_8 (AE016775) excinuclease ABC, A subunit [Pseudomonas putida KT2440]
          Length = 944

 Score = 1733 bits (4488), Expect = 0.0
 Identities = 859/945 (90%), Positives = 908/945 (96%), Gaps = 1/945 (0%)

>gb|AAO54196.1| (AE016858) excinuclease ABC, A subunit [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 992

 Score = 1711 bits (4432), Expect = 0.0
 Identities = 851/945 (90%), Positives = 903/945 (95%), Gaps = 1/945 (0%)

>gb|AAN83474.1|AE016770_274 (AE016770) Excinuclease ABC subunit A [Escherichia coli CFT073]
          Length = 940

 Score = 1481 bits (3835), Expect = 0.0
 Identities = 728/941 (77%), Positives = 829/941 (88%), Gaps = 2/941 (0%)








 
Structural Features:
COG0178, UvrA, Excinuclease ATPase subunit 
[DNA replication, recombination, and repair]
CD-Length = 935 residues,  99.8% aligned
Score = 1599 bits (4142), Expect = 0.0
Identities = 647/944 (68%), Positives = 787/944 (83%), Gaps = 13/944 (1%)








   
Genomic Context:






   
Comment:


















    ReferenceID:14049




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17325




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36932




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:90_cdd.html


    		




 
URL:

















    ReferenceID:37018




  
Author/Investigator(s):
        Husain I, Van Houten B, Thomas DC, Sancar A.





  
Title:
        Sequences of Escherichia coli uvrA gene and protein reveal two potential ATP binding sites.




  
PubMed:
        3007478


MedLine:
        




    
Source:
J Biol Chem. 1986 Apr 15;261(11):4895-901.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=86168204&dopt=Abstract

















    ReferenceID:37019




  
Author/Investigator(s):
        de la Morena ML, Hendrixson DR, St Geme JW 3rd.





  
Title:
        Isolation and characterization of the Haemophilus influenzae uvrA gene.




  
PubMed:
        8921840


MedLine:
        




    
Source:
Gene. 1996 Oct 24;177(1-2):23-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8921840









           
Homologs By Global Alignment 

           

       



     
Gene ID:90
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
169
                           PA4234_tr
                           translation of PA4234
                           945
                           99.99
                           99.99
                           0
                           4873.0
     

     
     
14110
                           gb|AAG07622.1|AE004840_8
                           (AE004840) excinuclease ABC subunit A [Pseudomonas aeruginosa PAO1]
                           945
                           99.89
                           99.99
                           0
                           4870.0
     

     
     
14111
                           gb|AAN66113.1|AE016239_8
                           (AE016775) excinuclease ABC, A subunit [Pseudomonas putida KT2440]
                           945
                           90.79
                           96.08
                           1
                           4486.0
     

     
     
14112
                           gb|AAO54196.1|
                           (AE016858) excinuclease ABC, A subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           993
                           85.80
                           90.93
                           49
                           4437.0
     

     
     
14113
                           gb|AAN83474.1|AE016770_274
                           (AE016770) Excinuclease ABC subunit A [Escherichia coli CFT073]
                           946
                           76.84
                           87.63
                           7
                           3835.0
     

     






      

          
GC ORFID: 43092How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4234Glimmer Score: 

          
Start: 4175876Stop: 4178713

          
Length: 2838


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4234 translation of PA4234Homolog Bit Score 1881.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5901 (ORF: BLASTX 1732.0), t_PA4234 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGATAAGATCCTGATTCGTGGGGCGCGTACCCACAACCTGAAGAACGTCGACCTCACACTGCCACGCGAC 
AAACTGATCGTGATCACCGGTCTTTCCGGTTCCGGCAAGTCTTCCCTGGCTTTCGACACGCTCTATGCGGAA 
GGCCAGCGGCGCTACGTGGAATCCCTCTCGGCCTACGCCCGGCAGTTCCTGTCGATGATGGAGAAGCCGGAC 
GTGGACACCATCGAAGGGCTGTCGCCGGCGATTTCCATCGAACAGAAGTCCACTTCCCACAACCCACGCTCC 
ACCGTGGGTACGATCACCGAGATCTACGACTACCTGCGCCTGCTTTATGCCCGCGTCGGTACCCCGCGCTGC 
CCGGACCACGACATCCCGCTGGAGGCGCAGACCGTCAGCCAGATGGTCGACCAGGTCCTGGCCCTGCCGGAA 
GGCAGCAAGCTGATGCTGCTGGCGCCGGTGATCCGCGAGCGCAAGGGCGAGCACCTGGCGGTGTTCGACGAG 
ATGCGCGCGCAGGGTTTCGTCCGCGCCCGGGTCGACGGCAAGCTCTACGAACTCGACGAAGTGCCGAAGCTG 
GATAAGCAGAAGAAGCACAGCATCGATGTGGTGGTGGACCGCTTCAAGGTTCGCGCGGACCTCCAGCAACGC 
CTGGCCGAGTCGTTCGAGACCGCCCTGTCCCTGGCCGACGGTATCGCCCTGGTAGCACCGATGGACGAGGAC 
GAGGATGTCGAGGAGATCATCTTCTCGGCGCGCTTCGCCTGCCCGGTCTGCGGCCACTCGATCAGCGAGCTG 
GAACCCAAGCTGTTCTCCTTCAACAACCCGGCCGGCGCCTGTCCGACCTGCGACGGCCTCGGCGTGAAGCAA 
TTCTTCGACGCGCGCCGGGTGGTCAATGGCGAGTTGACCCTGGCCGAGGGCGCGATCCGCGGCTGGGACCGG 
CGCAACGTCTATTACTTCCAGATGCTCGGCTCGCTGGCCCAGCATTACGGCTTCAGCCTGGAAGAACCCTTC 
GACGAACTCGGCGCCGAGCACCAGAAGGTGGTGCTCTACGGCTCCGGCCGGGAAAACGTCGACTTCCGCTAT 
CTCAACGACCGCGGCGACATCGTCAAGCGTTCGCACCCCTTCGAAGGCATCCTGCCGAACCTTGAGCGGCGC 
TACCGCGAGACCGAGTCGGCCACGGTCCGCGAGGAGCTGGCCAAGTTCCTCAGCACCCAGCCCTGCCCGGAT 
TGCCACGGTACCCGCCTGCGCCGCGAGGCGCGGCATGTGTGGGTCGGCGACCGGACGCTGCCGGCGATCACC 
GCGATGCCGGTCGGCGAGGCCTGCGAGTATGCCGCCGGACTCAGCCTGACCGGCCGCCGTGGCGAGATCGCG 
GCGAAAATCCTCAAGGAAATCCGCGACCGCCTGCAATTCCTGGTCAACGTCGGCCTCGACTACCTGACCCTC 
GACCGCAGCGCCGACACCCTGTCCGGCGGCGAAGCCCAGCGCATCCGCCTGGCCAGCCAGATCGGCGCCGGC 
CTGGTGGGAGTGATGTACATCCTCGACGAACCCTCGATCGGCCTGCACCAACGCGACAACGAACGCCTGCTC 
GGCACCCTCACCCACCTGCGCAACCTCGGCAACACGGTGATCGTGGTCGAGCACGACGAGGACGCGATCCGA 
CTCGCCGACTACGTCGTCGACATCGGTCCGGGCGCCGGTGTGCACGGCGGCCAGGTAGTGGCGGAAGGTACG 
CCCGACCAGGTGATGAACCACCCCGACTCGCTGACCGGCAAGTACCTTTCCGGGCGCAAGAAAATCGCGGTT 
CCGGCCAAGCGCACCCCGCGCGACAAGAAGAAGCTGCTGAAGCTGAAAGGCGCCCGCGGCAACAACCTGCAG 
AACGTCAACCTGGAAATCCCGGTCGGCCTGTTCACCTGCATCACCGGGGTCTCGGGCTCCGGCAAGTCGACG 
CTGATCAACAACACCCTGTTCCCGATCACCGCCACCGCGCTGAACGGCGCGACTACCCTGGAAGTGGCGCCG 
TACGACTCGTTCGACGGCCTGCAGCACCTGGACAAGGTGGTCGACATCGACCAGAGCCCGATCGGTCGTACC 
CCGCGCTCCAACCCGGCGACCTATACCGGCCTGTTCACGCCGATCCGCGAACTGTTCTCCGGCGTGCCGGAG 
GCCCGCTCGCGCGGCTACGGTCCCGGCCGCTTCTCGTTCAACGTCAAGGGCGGCCGTTGCGAGGCCTGCCAG 
GGCGACGGCGTGATCAAGGTGGAGATGCACTTCCTGCCGGACATCTACGTTCCCTGCGATGTCTGCAAGGGC 
AAGCGCTACAACCGCGAGACCCTGGAGATCCGCTACAAGGGCAAGAGCATCCACGAAGTGCTGGAGATGACC 
ATCGAGGAAGCCCGCGAGTTCTTCGACGCCGTCCCCGCCCTGGCGCGCAAGCTGCAGACACTGATGGACGTC 
GGCCTGTCCTACATCAAGCTGGGCCAGAGCGCGACCACCCTCTCGGGCGGCGAGGCACAGCGGGTCAAGCTG 
TCCCGCGAGCTGTCCAAGCGCGACACCGGCAAGACCCTGTACATCCTCGACGAACCGACCACCGGCCTGCAC 
TTCGCCGACATCCAGCAACTGCTCGACGTGCTCCACCGCCTGCGCGACCACGGCAACACCGTGGTGGTGATC 
GAGCACAACCTGGACGTGATCAAGACCGCCGACTGGCTGGTCGACCTCGGCCCCGAGGGCGGCTCCAAGGGT 
GGCCAGATCATCGCCAACGGCACGCCAGAGCAGGTGGCCGAGATGCCCCAGTCGCACACCGGCCACTTCCTC 
AAGCCGCTGCTGGAACGCGATCGCGCCTGA