ViewGene

Locus Name:
GeneID:
Location:

GeneID: 897

TrivialName: PA14_42160

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_42160

PAO1 Ortholog Locus: PA1730

Sequence Length: 1413

Protein Length: 470

Start: 3762202

Stop: 3760790

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05119.1|AE004599_4 (AE004599) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 470/470 (100%), Positives = 470/470 (100%)

Sequence:

ATGGCACGCATGTTTTACGACGAGATGCACGATGCTGGCGGCGAATGCCGCTCGCATTATCGGGAATTCGCT
CGCTGGCTGGCCGACACCCCTGAAGAGCAATTGCTGCAACGCCGGCGCGAAGCCGACCTGCTGTTCCACCGC
GCCGGCATCACCTTCACCCTGTACGGCGACGAGCAGGGCACCGAGCGCCTGATCCCCTTCGACACCATCCCG
CGCAGCATTCCCGCGGCGGAGTGGGCGCACATCGAGGCCGGCTGCATCCAGCGCGTCCAGGCGCTGAACCTG
TTCCTCGCCGATCTCTACCACGAACAGCGCATCCTCAAGGCCGGCGTGATTCCTGCCGAGCAGGTCCTGGCC
AACGACCAGTACCAACTGGCGATGCAGGGACTGGACCTGCCGGGCAACGTCTACGCGCACATTGCCGGGGTT
GACCTGGTCCGCGACGGCAGCGGCAACTACTACGTGCTGGAGGACAACCTGCGCACGCCCAGCGGTGTTTCC
TACATGCTGGAAAACCGCAAGATGATGATGCGCCTGTTCCCCGAGCTGTTCGTCCGCCAGCGCGTGGCGCCG
ATCGACCACTACCCGGACCTGCTGCTCGACACCCTCAAGCGGGCCAGTGACGTCGAATCGCCGAGCGTGGTG
GTATTGACGCCGGGACGTTTCAACAGCGCCTACTTCGAACACGCCTTCCTCGCCCGCGAGATGGGCGTGGAA
CTGGTCGAAGGCGCCGATCTGTTCGTCCGCGACGAGCGGGTCTACATGCGCACGACGGCCGGACCGCAACCG
GTGGACGTGATCTACCGAAGGATCGACGACGCCTTCCTCGACCCGCTGGCGTTCAACCCGGATTCGCTGCTC
GGCGTGCCCGGCCTGCTGGCCGCCTACCGGGCCGGCAACCTGGTGCTGGCCAACGCGATCGGTACCGGGGTG
GCCGACGACAAGTCGATCTACCCCTACGTGCCGGACATGATCCGCTTCTACCTCGGCGAAGACCCGCTGCTG
CACAACGTGCCGACCTGGCAATGTCGCAAGCCGAAGGAACTGGCGCACGTCCTGGCGCACCTGCCGGAGCTG
GTGGTGAAGGAGACCCAGGGTTCCGGCGGCTACGGCATGCTGGTCGGACCGGCGGCCAGCCGGGAGGAAATC
GAGCTGTTCCGCGAGCGCCTGAAGGCTCGCCCGGAGGCCTATATCGCGCAACCGACGCTGTCCCTGTCGACC
TGTCCGACTTTCGTCGAGAGCGGCGTCGCGCCACGCCATATCGACCTGCGGCCGTTCGTCCTGTCGGCGCCG
GATCGGGTTCGCCTGGTGCCTGGCGGGCTGACCCGGGTGGCGTTGCGCGAAGGCTCGCTGGTGGTCAATTCG
TCCCAGGGCGGCGGCACCAAGGACACCTGGGTGGTGGAGGAATAA

Translation:

MARMFYDEMHDAGGECRSHYREFARWLADTPEEQLLQRRREADLLFHRAGITFTLYGDEQGTERLIPFDTIP
RSIPAAEWAHIEAGCIQRVQALNLFLADLYHEQRILKAGVIPAEQVLANDQYQLAMQGLDLPGNVYAHIAGV
DLVRDGSGNYYVLEDNLRTPSGVSYMLENRKMMMRLFPELFVRQRVAPIDHYPDLLLDTLKRASDVESPSVV
VLTPGRFNSAYFEHAFLAREMGVELVEGADLFVRDERVYMRTTAGPQPVDVIYRRIDDAFLDPLAFNPDSLL
GVPGLLAAYRAGNLVLANAIGTGVADDKSIYPYVPDMIRFYLGEDPLLHNVPTWQCRKPKELAHVLAHLPEL
VVKETQGSGGYGMLVGPAASREEIELFRERLKARPEAYIAQPTLSLSTCPTFVESGVAPRHIDLRPFVLSAP
DRVRLVPGGLTRVALREGSLVVNSSQGGGTKDTWVVEE*

AnnotationID:906 GeneID:897

AnnotatorUID: diggins

Modification Date/Time: 2005-02-28 07:07:09

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA1730

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:1797

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:18939

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:37152

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 897_cdd.html

URL:

Homologs By Global Alignment

Gene ID:897

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

1596 PA1730_tr translation of PA1730 470 99.99 99.99 0 2445.0

57533 gb|AAG05119.1|AE004599_4 (AE004599) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 470 99.99 99.99 0 2445.0

57534 gb|AAO55577.1| (AE016863) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 470 82.97 92.34 1 2067.0

57535 gb|AAN68296.1|AE016463_10 (AE016784) conserved hypothetical protein [Pseudomonas putida KT2440] 470 80.42 91.27 1 2023.0

57536 emb|CAD14823.1| (AL646062) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum] 508 65.15 75.59 39 1714.0

GC ORFID: `43899`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1730`	Glimmer Score:
Start: `1191707`	Stop: `1193119`
Length: `1413`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAA`	Truncated Stop:
Homolog: `t_PA1730 translation of PA1730`	Homolog Bit Score `946.0`
Other Homologs: `t_PA1730 (ORF: GLIMMER)`
GC ORF Sequence
ATGGCACGCATGTTTTACGACGAGATGCACGATGCTGGCGGCGAATGCCGCTCGCATTATCGGGAATTCGCT CGCTGGCTGGCCGACACCCCTGAAGAGCAATTGCTGCAACGCCGGCGCGAAGCCGACCTGCTGTTCCACCGC GCCGGCATCACCTTCACCCTGTACGGCGACGAGCAGGGCACCGAGCGCCTGATCCCCTTCGACACCATCCCG CGCAGCATTCCCGCGGCGGAGTGGGCGCACATCGAGGCCGGCTGCATCCAGCGCGTCCAGGCGCTGAACCTG TTCCTCGCCGATCTCTACCACGAACAGCGCATCCTCAAGGCCGGCGTGATTCCTGCCGAGCAGGTCCTGGCC AACGACCAGTACCAACTGGCGATGCAGGGACTGGACCTGCCGGGCAACGTCTACGCGCACATTGCCGGGGTT GACCTGGTCCGCGACGGCAGCGGCAACTACTACGTGCTGGAGGACAACCTGCGCACGCCCAGCGGTGTTTCC TACATGCTGGAAAACCGCAAGATGATGATGCGCCTGTTCCCCGAGCTGTTCGTCCGCCAGCGCGTGGCGCCG ATCGACCACTACCCGGACCTGCTGCTCGACACCCTCAAGCGGGCCAGTGACGTCGAATCGCCGAGCGTGGTG GTATTGACGCCGGGACGTTTCAACAGCGCCTACTTCGAACACGCCTTCCTCGCCCGCGAGATGGGCGTGGAA CTGGTCGAAGGCGCCGATCTGTTCGTCCGCGACGAGCGGGTCTACATGCGCACGACGGCCGGACCGCAACCG GTGGACGTGATCTACCGAAGGATCGACGACGCCTTCCTCGACCCGCTGGCGTTCAACCCGGATTCGCTGCTC GGCGTGCCCGGCCTGCTGGCCGCCTACCGGGCCGGCAACCTGGTGCTGGCCAACGCGATCGGTACCGGGGTG GCCGACGACAAGTCGATCTACCCCTACGTGCCGGACATGATCCGCTTCTACCTCGGCGAAGACCCGCTGCTG CACAACGTGCCGACCTGGCAATGTCGCAAGCCGAAGGAACTGGCGCACGTCCTGGCGCACCTGCCGGAGCTG GTGGTGAAGGAGACCCAGGGTTCCGGCGGCTACGGCATGCTGGTCGGACCGGCGGCCAGCCGGGAGGAAATC GAGCTGTTCCGCGAGCGCCTGAAGGCTCGCCCGGAGGCCTATATCGCGCAACCGACGCTGTCCCTGTCGACC TGTCCGACTTTCGTCGAGAGCGGCGTCGCGCCACGCCATATCGACCTGCGGCCGTTCGTCCTGTCGGCGCCG GATCGGGTTCGCCTGGTGCCTGGCGGGCTGACCCGGGTGGCGTTGCGCGAAGGCTCGCTGGTGGTCAATTCG TCCCAGGGCGGCGGCACCAAGGACACCTGGGTGGTGGAGGAATAA