ViewGene
Locus Name:
GeneID:
Location:

GeneID:896
TrivialName: PA14_18850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18850
PAO1 Ortholog Locus:PA3516
Sequence Length:1452
Protein Length:483
Start: 1624802
Stop: 1626253
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06904.1|AE004772_2 (AE004772) probable lyase [Pseudomonas aeruginosa PAO1]
Identities = 482/483 (99%), Positives = 483/483 (100%)
Sequence:
ATGGATGCTGAATCGCTGGAAATGCTTGCCCGTTCCTCGTGCACCGCGCATCCGCAGAGCTTCGGCGGCGCA
CCGGCCGAGTCGTCCTGCAAGCACGAACACAGTCACATCGTTGACTCTAAAACCCATGGCGGAGGCTACGCC
GGTCCGGTGAGCCGACGGATCTTCTGTAGCCACTGCCGCCTGCAACGCTGGCTCGACGTGGAGGCGGCGCTG
GCGCTGGCGCAGGCCGATGTCGGCGTCATTCCGCCCGAGGCCGCGCTGGAGATCGCGAAGGCCGCCAGGCTT
TCGGCCGTCGACCTGCAGCAGATCGCCGACGGCGTGGCCAGCACCGGGCACTCGCTGATGCCCCTGCTGGGC
GCGCTGCAAAGGAACTGCAGCCCCAGCGCGCGCGAGTACGTGCATTTCGGCGCGACCACGCAGGATATCCAG
GACACCGCGCAGTCCCTGGAAATGCGCGATGTGCTGGATGAAACGGAGCGGGCGCTGGACATCCTCCTGGAC
CGGCTCTCGGTGCTGGCGAGCGGGACCCGCAATGCGCTGATGGTCGCCAGGACCCACTCGATCCCGGCGTTG
CCGACCACCTTCGGGCTGAAGGTGGCCGGCTGGATCGACGAGTTGCTGCGTCACCGCGAACGCCTGGGCGAG
GCGCGCAAGCGGATCCTGGTGGTGCAACTGTTCGGCGGCGTGGGCACGATGGCCGCCTTCGGCGACGAGGCC
ATTCTCCTGCTCGAAAGCTTCGCGCGGCGGCTGTCGCTGGACGTGCCGCTGGCGGGTTGGCACGTGTCCCGC
GACCGGGTTACCGAGTTCGTCAGCACCCTGGCCATGGTCACCGCGTCCCTGGCGCGGATCGCCGACGAGATC
CGCACCCTGAACCGCTGGGAGATCGGCGAGCTGGAGGTGGGCTGGACGCAGCAGCAGATCGGTAGCAGCACC
ATGCCCCACAAGCGCAATCCGGAAGGCTGCGAGCAGGTCGTGGTGCTGGCCCGGCTGGCCAAGGCCCAGGTC
CTGCTCGCGCTGGACGCCATGATCCTCGAGCACGAGCGGGACTACCGCGGCACGCGCCTGGAGTGGTGTGCG
GTGGCGGACGTTTCCCACTATGCGCTGATGGCGCTGTCGCTGCTGACCGACACCATCGACGGGCTCACGgTC
CaCGACGAGACCATGGCGCGGAcGgCGAATGCATACAGCGATGCGATCTGTaccgAGGCGTTCGTCTTCGAG
ATGGCCAAGCAACTGGGCAAGAGCAGCGCTTACGAAATCATCTTCGAGATCACCCAGGCCTGCCAGCGCAAG
CGGATTCCGATGCGCCAGGCGCTCGAGTCGGATCCGCGGGTGGGCGCCGTCATGCCGAAGGAAACCCTGGCC
AGGCTGTTCGAGCCGCGGACCCATCTCGGCATGGCCGGGACCATCGTCGACAAGGTGCTGGACAAGGTCGCC
AGCCACCACTGA
Translation:
MDAESLEMLARSSCTAHPQSFGGAPAESSCKHEHSHIVDSKTHGGGYAGPVSRRIFCSHCRLQRWLDVEAAL
ALAQADVGVIPPEAALEIAKAARLSAVDLQQIADGVASTGHSLMPLLGALQRNCSPSAREYVHFGATTQDIQ
DTAQSLEMRDVLDETERALDILLDRLSVLASGTRNALMVARTHSIPALPTTFGLKVAGWIDELLRHRERLGE
ARKRILVVQLFGGVGTMAAFGDEAILLLESFARRLSLDVPLAGWHVSRDRVTEFVSTLAMVTASLARIADEI
RTLNRWEIGELEVGWTQQQIGSSTMPHKRNPEGCEQVVVLARLAKAQVLLALDAMILEHERDYRGTRLEWCA
VADVSHYALMALSLLTDTIDGLTVHDETMARTANAYSDAICTEAFVFEMAKQLGKSSAYEIIFEITQACQRK
RIPMRQALESDPRVGAVMPKETLARLFEPRTHLGMAGTIVDKVLDKVASHH*
AnnotationID:905GeneID:896
AnnotatorUID: diggins
Modification Date/Time: 2005-07-31 10:10:33
Gene Name:
Confidence Code:3
GeneProduct:putative lyase
Cell Localization:()
Synonyms:PA3516
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00206,COG0015
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAB98931.1| (U67536) adenylosuccinate lyase (purB) [Methanococcus jannaschii]
           [Methanocaldococcus jannaschii]
          Length = 462

 Score =  259 bits (662), Expect = 3e-68
 Identities = 160/433 (36%), Positives = 246/433 (56%), Gaps = 3/433 (0%)

>emb|CAB73819.1| (AL139078) putative fumarate lyase [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
          Length = 455

 Score =  254 bits (650), Expect = 6e-67
 Identities = 149/443 (33%), Positives = 235/443 (53%)






 
Structural Features:
pfam00206, Lyase_1, Lyase.
CD-Length = 312 residues,  99.7% aligned
Score =  146 bits (370), Expect = 5e-36
Identities = 94/315 (29%), Positives = 132/315 (41%), Gaps = 26/315 (8%)

COG0015, PurB, Adenylosuccinate lyase 
[Nucleotide transport and metabolism]
CD-Length = 438 residues, 100.0% aligned
Score =  435 bits (1119), Expect = 7e-123
Identities = 179/438 (40%), Positives = 254/438 (57%), Gaps = 2/438 (0%)







   
Genomic Context:






   
Comment:


















    ReferenceID:1795




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18937




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32048




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:896_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:896
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1594
                           PA3516_tr
                           translation of PA3516
                           483
                           99.79
                           99.99
                           0
                           2449.0
     

     
     
57531
                           gb|AAG06904.1|AE004772_2
                           (AE004772) probable lyase [Pseudomonas aeruginosa PAO1]
                           483
                           99.79
                           99.99
                           0
                           2449.0
     

     
     
1595
                           PA3517_tr
                           translation of PA3517
                           509
                           37.52
                           51.27
                           58
                           876.0
     

     
     
57532
                           gb|AAG06905.1|AE004772_3
                           (AE004772) probable lyase [Pseudomonas aeruginosa PAO1]
                           509
                           37.52
                           51.27
                           58
                           876.0
     

     






      

          
GC ORFID: 43898How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3516Glimmer Score: 

          
Start: 3329132Stop: 3327681

          
Length: 1452


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3516 translation of PA3516Homolog Bit Score 947.0

          
Other Homologs:  t_PA3516 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGATGCTGAATCGCTGGAAATGCTTGCCCGTTCCTCGTGCACCGCGCATCCGCAGAGCTTCGGCGGCGCA 
CCGGCCGAGTCGTCCTGCAAGCACGAACACAGTCACATCGTTGACTCTAAAACCCATGGCGGAGGCTACGCC 
GGTCCGGTGAGCCGACGGATCTTCTGTAGCCACTGCCGCCTGCAACGCTGGCTCGACGTGGAGGCGGCGCTG 
GCGCTGGCGCAGGCCGATGTCGGCGTCATTCCGCCCGAGGCCGCGCTGGAGATCGCGAAGGCCGCCAGGCTT 
TCGGCCGTCGACCTGCAGCAGATCGCCGACGGCGTGGCCAGCACCGGGCACTCGCTGATGCCCCTGCTGGGC 
GCGCTGCAAAGGAACTGCAGCCCCAGCGCGCGCGAGTACGTGCATTTCGGCGCGACCACGCAGGATATCCAG 
GACACCGCGCAGTCCCTGGAAATGCGCGATGTGCTGGATGAAACGGAGCGGGCGCTGGACATCCTCCTGGAC 
CGGCTCTCGGTGCTGGCGAGCGGGACCCGCAATGCGCTGATGGTCGCCAGGACCCACTCGATCCCGGCGTTG 
CCGACCACCTTCGGGCTGAAGGTGGCCGGCTGGATCGACGAGTTGCTGCGTCACCGCGAACGCCTGGGCGAG 
GCGCGCAAGCGGATCCTGGTGGTGCAACTGTTCGGCGGCGTGGGCACGATGGCCGCCTTCGGCGACGAGGCC 
ATTCTCCTGCTCGAAAGCTTCGCGCGGCGGCTGTCGCTGGACGTGCCGCTGGCGGGTTGGCACGTGTCCCGC 
GACCGGGTTACCGAGTTCGTCAGCACCCTGGCCATGGTCACCGCGTCCCTGGCGCGGATCGCCGACGAGATC 
CGCACCCTGAACCGCTGGGAGATCGGCGAGCTGGAGGTGGGCTGGACGCAGCAGCAGATCGGTAGCAGCACC 
ATGCCCCACAAGCGCAATCCGGAAGGCTGCGAGCAGGTCGTGGTGCTGGCCCGGCTGGCCAAGGCCCAGGTC 
CTGCTCGCGCTGGACGCCATGATCCTCGAGCACGAGCGGGACTACCGCGGCACGCGCCTGGAGTGGTGTGCG 
GTGGCGGACGTTTCCCACTATGCGCTGATGGCGCTGTCGCTGCTGACCGACACCATCGACGGGCTCACGgTC 
CaCGACGAGACCATGGCGCGGAcGgCGAATGCATACAGCGATGCGATCTGTaccgAGGCGTTCGTCTTCGAG 
ATGGCCAAGCAACTGGGCAAGAGCAGCGCTTACGAAATCATCTTCGAGATCACCCAGGCCTGCCAGCGCAAG 
CGGATTCCGATGCGCCAGGCGCTCGAGTCGGATCCGCGGGTGGGCGCCGTCATGCCGAAGGAAACCCTGGCC 
AGGCTGTTCGAGCCGCGGACCCATCTCGGCATGGCCGGGACCATCGTCGACAAGGTGCTGGACAAGGTCGCC 
AGCCACCACTGA