ViewGene

Locus Name:
GeneID:
Location:

GeneID:895
TrivialName: PA14_24690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24690
PAO1 Ortholog Locus:PA3047
Sequence Length:1431
Protein Length:476
Start: 2159092
Stop: 2157662
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06435.1|AE004729_9 (AE004729) probable D-alanyl-D-alanine carboxypeptidase [Pseudomonas aeruginosa PAO1]
Identities = 475/476 (99%), Positives = 475/476 (99%)
Sequence:
ATGTTCAAGTCGCTGCGTACTCTTGCCTTCGCCACGCTCCTGCCTTTCGCCCTTCCCACCCTCGCCCAGGTC
AACGCCACCCTGCCGGCCAACGTGCAGAAAGCCCTGCAGACCAACAAGCTGACCGGCAACGATCTGTCGCTG
GTGCTGATTCCGCTCGACGGCCCGGGCAACCCCACCTACTACAACGCCGACGTATCGGTGAACCCGGCCTCG
ACCATGAAGCTGTTCACCACCTATGCCGCCCTGGAAATGCTCGGCCCGACCTACCAGTGGAAGACCGAGTTC
TACACCGACGGCCAGCTCAAGAACGGAGTGCTCAACGGCAACCTCTACCTCAAGGGCGGCGGCGATCCGAAA
CTGAACATGGAGAAGCTCTGGCTGTTGATGCGTGACCTGCGCGCCAATGGCGTGACCAAGGTCACAGGTGAC
CTGGTACTCGACCGCAGCTACTTCAACATCCCTCATTTGCCGGTATTCAACGACGACGGCGGCGACGACACC
AAGCCGTTCCTGGTCGGTCCGGACTCGCTGCTGGTCAACCTGAAGAGCGTGCGCATGGTGGTGCGCACCGAC
GGCAACAAGGTCAACGTGCAGATGGACCCGCCGCTGGCCAACGTACGCATCGACAACCAGGTGAAGATGACC
GCGCCGGCCACCTGCCCGGCCTGGCCGAAGCTGCGCTTCAGCCCGGTGACCCAGTTCGACGGCACCACCCTG
CTGGCCACCGGACAGATTCCCCAGGGCTGTAGCGCGCAGACCTACATGTCGCTGCTCGACCATCCCGGCTAC
ACCGCCGGCGCGGTGCGCGGCATCTGGCAGGAACTGGGCGGCAGCATCCTCGGCAAGGACCGCCAGGGCAGC
GTACCGCGCAACGCCACGCTGATCGCCAAGGCCTTCTCGCCAGACCTGGTCGAGATCATCCGCGACATCAAC
AAATACAGTAACAACACCATGGCCCGGCAGTTGTTCCTCTCCATCGGCGCGCAGTTCCGCAACAGCGCCGAC
GGCGACGACGCCCAGGCCGCGCAGCGGGTGGTGCGGCAGTGGCTGGCGCGCAAGGGCATCACCGCGCCGCGC
CTGGTGATGGAGAACGGCTCGGGACTGTCGCGCCAGGAACGGGTCAGCGCCCGTGAGATGGCGGCGATGCTG
CAAGCCGCCTGGCACAGCCCCTATGCAGCGGAGTACATCTCCTCGCTGCCGCTGGCCGGCCTCGACGGCACC
ATGCGCAAACGCCTGCGGCGCACCGCACTGGTCGGCGAGGCGCACGTGAAGACCGGCACCCTCAACACCGTG
CGCGCCCTCGCCGGCTTCAGCCGCGACGCCAGCGGCCACAACTGGGTGGTGGTGGCGATCCTCAACAGCCCG
CGGCCGTGGGGCGCTTCGGCGATCCTCGACCAGGTACTGCTGAGCCTGCACGCGCGGAAATAA
Translation:
MFKSLRTLAFATLLPFALPTLAQVNATLPANVQKALQTNKLTGNDLSLVLIPLDGPGNPTYYNADVSVNPAS
TMKLFTTYAALEMLGPTYQWKTEFYTDGQLKNGVLNGNLYLKGGGDPKLNMEKLWLLMRDLRANGVTKVTGD
LVLDRSYFNIPHLPVFNDDGGDDTKPFLVGPDSLLVNLKSVRMVVRTDGNKVNVQMDPPLANVRIDNQVKMT
APATCPAWPKLRFSPVTQFDGTTLLATGQIPQGCSAQTYMSLLDHPGYTAGAVRGIWQELGGSILGKDRQGS
VPRNATLIAKAFSPDLVEIIRDINKYSNNTMARQLFLSIGAQFRNSADGDDAQAAQRVVRQWLARKGITAPR
LVMENGSGLSRQERVSAREMAAMLQAAWHSPYAAEYISSLPLAGLDGTMRKRLRRTALVGEAHVKTGTLNTV
RALAGFSRDASGHNWVVVAILNSPRPWGASAILDQVLLSLHARK*
AnnotationID:904GeneID:895
AnnotatorUID: diggins
Modification Date/Time: 2004-11-24 07:07:45
Gene Name:
Confidence Code:3
GeneProduct:putative D-alanyl-D-alanine carboxypeptidase
Cell Localization:()
Synonyms:dacB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2027,pfam02113
Secondary Functional Category(ies):cell envelope biogenesis, outer membrane
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN67712.1|AE016402_4 (AE016781) D-alanyl-D-alanine carboxypeptidase [Pseudomonas putida
           KT2440]
          Length = 470

 Score =  686 bits (1771), Expect = 0.0
 Identities = 335/460 (72%), Positives = 388/460 (84%), Gaps = 2/460 (0%)

>gb|AAO55828.1| (AE016864) D-alanyl-D-alanine carboxypeptidase [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 488

 Score =  684 bits (1764), Expect = 0.0
 Identities = 340/476 (71%), Positives = 402/476 (84%), Gaps = 5/476 (1%)

Structural Features:
COG2027, DacB, D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) 
[Cell envelope biogenesis, outer membrane]

pfam02113, Peptidase_S13, D-Ala-D-Ala carboxypeptidase 3 (S13) family.
Genomic Context:
Comment:
ReferenceID:1793
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18935
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36003
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:895_cdd.html
URL:
Homologs By Global Alignment
Gene ID:895

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1593 PA3047_tr translation of PA3047 476 99.78 99.78 0 2449.0
57523 gb|AAG06435.1|AE004729_9 (AE004729) probable D-alanyl-D-alanine carboxypeptidase [Pseudomonas aeruginosa PAO1] 476 99.78 99.78 0 2449.0
57525 gb|AAO55828.1| (AE016864) D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. tomato str. DC3000] 490 69.38 82.24 16 1771.0
57524 gb|AAN67712.1|AE016402_4 (AE016781) D-alanyl-D-alanine carboxypeptidase [Pseudomonas putida KT2440] 485 69.07 80.20 24 1772.0
57527 emb|CAE36449.1| (BX640426) probable D-alanyl-D-alanine carboxypeptidase [Bordetella parapertussis] 491 39.71 56.41 28 790.0
GC ORFID: 43897How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3047Glimmer Score:
Start: 2794836Stop: 2796266
Length: 1431
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA3047 translation of PA3047Homolog Bit Score 947.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene356 (ORF: BLASTX 686.0), t_PA3047 (ORF: GLIMMER)
GC ORF Sequence
ATGTTCAAGTCGCTGCGTACTCTTGCCTTCGCCACGCTCCTGCCTTTCGCCCTTCCCACCCTCGCCCAGGTC
AACGCCACCCTGCCGGCCAACGTGCAGAAAGCCCTGCAGACCAACAAGCTGACCGGCAACGATCTGTCGCTG
GTGCTGATTCCGCTCGACGGCCCGGGCAACCCCACCTACTACAACGCCGACGTATCGGTGAACCCGGCCTCG
ACCATGAAGCTGTTCACCACCTATGCCGCCCTGGAAATGCTCGGCCCGACCTACCAGTGGAAGACCGAGTTC
TACACCGACGGCCAGCTCAAGAACGGAGTGCTCAACGGCAACCTCTACCTCAAGGGCGGCGGCGATCCGAAA
CTGAACATGGAGAAGCTCTGGCTGTTGATGCGTGACCTGCGCGCCAATGGCGTGACCAAGGTCACAGGTGAC
CTGGTACTCGACCGCAGCTACTTCAACATCCCTCATTTGCCGGTATTCAACGACGACGGCGGCGACGACACC
AAGCCGTTCCTGGTCGGTCCGGACTCGCTGCTGGTCAACCTGAAGAGCGTGCGCATGGTGGTGCGCACCGAC
GGCAACAAGGTCAACGTGCAGATGGACCCGCCGCTGGCCAACGTACGCATCGACAACCAGGTGAAGATGACC
GCGCCGGCCACCTGCCCGGCCTGGCCGAAGCTGCGCTTCAGCCCGGTGACCCAGTTCGACGGCACCACCCTG
CTGGCCACCGGACAGATTCCCCAGGGCTGTAGCGCGCAGACCTACATGTCGCTGCTCGACCATCCCGGCTAC
ACCGCCGGCGCGGTGCGCGGCATCTGGCAGGAACTGGGCGGCAGCATCCTCGGCAAGGACCGCCAGGGCAGC
GTACCGCGCAACGCCACGCTGATCGCCAAGGCCTTCTCGCCAGACCTGGTCGAGATCATCCGCGACATCAAC
AAATACAGTAACAACACCATGGCCCGGCAGTTGTTCCTCTCCATCGGCGCGCAGTTCCGCAACAGCGCCGAC
GGCGACGACGCCCAGGCCGCGCAGCGGGTGGTGCGGCAGTGGCTGGCGCGCAAGGGCATCACCGCGCCGCGC
CTGGTGATGGAGAACGGCTCGGGACTGTCGCGCCAGGAACGGGTCAGCGCCCGTGAGATGGCGGCGATGCTG
CAAGCCGCCTGGCACAGCCCCTATGCAGCGGAGTACATCTCCTCGCTGCCGCTGGCCGGCCTCGACGGCACC
ATGCGCAAACGCCTGCGGCGCACCGCACTGGTCGGCGAGGCGCACGTGAAGACCGGCACCCTCAACACCGTG
CGCGCCCTCGCCGGCTTCAGCCGCGACGCCAGCGGCCACAACTGGGTGGTGGTGGCGATCCTCAACAGCCCG
CGGCCGTGGGGCGCTTCGGCGATCCTCGACCAGGTACTGCTGAGCCTGCACGCGCGGAAATAA