ViewGene
Locus Name:
GeneID:
Location:

GeneID:894
TrivialName: PA14_31380
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31380
PAO1 Ortholog Locus:PA2563
Sequence Length:1488
Protein Length:495
Start: 2729800
Stop: 2728313
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05951.1|AE004684_6 (AE004684) probable sulfate transporter [Pseudomonas aeruginosa PAO1]
Identities = 491/495 (99%), Positives = 492/495 (99%)
Sequence:
ATGCTACAGACGCTGAAACAGAACTGGTTCTCCAATATTCGCGGCGACCTGCTCGCCGGCCTGGTCGTCGCC
CTGGCGCTGATCCCCGAGGCCATCGCCTTCTCCATCATCGCCGGGGTCGACCCGAAGATCGGCCTGTACGCC
TCCTTCAGCATGGCGGTGGTGATCGCCTTCGCCGGCGGCCGTCCGGGAATGATCTCCGCCGCTACCGGCGCC
ATGGCGCTGCTGATGGTCAACCTGGTGAAGGACCACGGCCTGCAATACCTGCTGGCGGCGACCCTGCTCTGC
GGCGTGCTGCAGATACTCGCCGGCTACCTGCGCCTGGGCTCGCTGATGCGCTTCGTCTCGCGCTCGGTGGTG
ACCGGTTTCGTCAATGCCCTGGCGATCCTCATCTTCATGGCCCAGCTACCCGAACTCACCGATGTCGGCTGG
CCGGTCTACGCGATGACCGCCGCGGGCCTGGCGATCGTCTACGGCTTCCCGCACCTGCCCCGGATCGGCCGG
CTGCTGCCCTCTCCGCTGGTATGCATCCTGGTCCTCACCGGCATATCCATCTACCTGGGCCTCGACATCCGC
ACCGTCGGCGACATGGGTCAGTTGCCCGACAGCCTGCCGCTGTTCCTCTGGCCGGACGTGCCGCTGAACCTC
GACACCCTGCTGATCGTCCTGCCCTACTCCGCCGCCCTGGCTGTGGTCGGCCTTCTGGAGTCGCTGATGACC
GCCACCATCGTCGACGAGATGACCGACACCGGCAGCGACAAGAACCGCGAATGCAAGGGCCAGGGGCTGGCG
AACATAGCCACCGGCCTGCTCGGCGGCATGGCTGGCAGCGCGATGATCGGCCAGTCGGTGATCAATGTTAAA
TCCGGCGGGCGCAGCCGGCTCTCGACCCTGGTGGCCGGCGTCACGCTGCTGCTGATGGTGGTGTTCCTCAGC
GACTGGGTCGGGCGGATTCCCATGGCGGCCCTGGTGGCGGTGATGATCATGGTGTCCATCGGCACCTTCCGC
TGGGAGTCGATCCGCAACCTGAAGCGCTACCCGCTATCGACCAACCTGGTCATGCTGGTGACGGTCGGCGTG
GTCCTCGCCACCCACAACCTGGCCTTCGGCGTGGTCGCCGGCGTTCTTCTGGCCTCGCTGTTCTTCGCCAAC
AAGATCGGGCACTACCTCGATATCGACAGCGAACGCTCCGCCGACGGCACCCGCCGCCACTACCAGGTGAGC
GGGCAGGTGTTCTTCGCGTCGTCCGGCAGGTTCGTCGCTGCCTTCGACCTGAAAGAGACGCTGGAGCATGTG
CTCATCGACCTGCGCCACGCCCACCTGTGGGACGTCACCGCCGTCGCGGCACTGGACAAGGTAGTCCTGGGC
TTTCGCCAGCGCGGCGTGCAGGCCGACGTGCTGGGCCTGAACGCCGCCAGCGCGACCCTGGTCGATCGCTTC
GGCGCCTACGACAAGCCGGGCGCCGTGGACATTCTCTCCGATCACTGA
Translation:
MLQTLKQNWFSNIRGDLLAGLVVALALIPEAIAFSIIAGVDPKIGLYASFSMAVVIAFAGGRPGMISAATGA
MALLMVNLVKDHGLQYLLAATLLCGVLQILAGYLRLGSLMRFVSRSVVTGFVNALAILIFMAQLPELTDVGW
PVYAMTAAGLAIVYGFPHLPRIGRLLPSPLVCILVLTGISIYLGLDIRTVGDMGQLPDSLPLFLWPDVPLNL
DTLLIVLPYSAALAVVGLLESLMTATIVDEMTDTGSDKNRECKGQGLANIATGLLGGMAGSAMIGQSVINVK
SGGRSRLSTLVAGVTLLLMVVFLSDWVGRIPMAALVAVMIMVSIGTFRWESIRNLKRYPLSTNLVMLVTVGV
VLATHNLAFGVVAGVLLASLFFANKIGHYLDIDSERSADGTRRHYQVSGQVFFASSGRFVAAFDLKETLEHV
LIDLRHAHLWDVTAVAALDKVVLGFRQRGVQADVLGLNAASATLVDRFGAYDKPGAVDILSDH*
AnnotationID:903GeneID:894
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 06:06:29
Gene Name:
Confidence Code:3
GeneProduct:putative sulfate transporter
Cell Localization:()
Synonyms:sfpA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative sulfate permease
Functional Category Confidence Code:5
COGs:COG0659,pfam00916
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56714.1| (AE016867) sulfate permease family protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 495

 Score =  750 bits (1937), Expect = 0.0
 Identities = 376/495 (75%), Positives = 432/495 (87%)

>gb|AAM08007.1| (AY090559) putative sulfate permease [Providencia rettgeri]
          Length = 508

 Score =  710 bits (1832), Expect = 0.0
 Identities = 355/492 (72%), Positives = 426/492 (86%), Gaps = 1/492 (0%)

>dbj|BAB93652.1| (AP004237) sulfate permease [Proteus vulgaris]
          Length = 492

 Score =  690 bits (1781), Expect = 0.0
 Identities = 344/490 (70%), Positives = 420/490 (85%), Gaps = 5/490 (1%)








 
Structural Features:
COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) 
[Inorganic ion transport and metabolism]
CD-Length = 554 residues,  95.8% aligned
Score =  390 bits (1003), Expect = 2e-109
Identities = 198/536 (36%), Positives = 281/536 (52%), Gaps = 47/536 (8%)

pfam00916, Sulfate_transp, Sulfate transporter family.
CD-Length = 312 residues,  99.7% aligned
Score =  209 bits (533), Expect = 7e-55
Identities = 112/312 (35%), Positives = 165/312 (52%), Gaps = 30/312 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1791




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18933




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33129




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:894_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:894
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1592
                           PA2563_tr
                           translation of PA2563
                           495
                           99.19
                           99.39
                           0
                           2448.0
     

     
     
57481
                           gb|AAG05951.1|AE004684_6
                           (AE004684) probable sulfate transporter [Pseudomonas aeruginosa PAO1]
                           495
                           99.19
                           99.39
                           0
                           2448.0
     

     
     
57482
                           gb|AAD47994.1|
                           (AF157801) sulfate permease [Pseudomonas sp. R9]
                           495
                           77.17
                           88.88
                           0
                           1970.0
     

     
     
57483
                           gb|AAO56714.1|
                           (AE016867) sulfate permease family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           495
                           75.95
                           87.27
                           0
                           1937.0
     

     
     
57484
                           gb|AAM08007.1|
                           (AY090559) putative sulfate permease [Providencia rettgeri]
                           509
                           69.74
                           84.28
                           15
                           1835.0
     

     






      

          
GC ORFID: 43896How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2563Glimmer Score: 

          
Start: 2224126Stop: 2225613

          
Length: 1488


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2563 translation of PA2563Homolog Bit Score 947.0

          
Other Homologs:  psyr_15may02_Scaffold11_revised_gene1815 (ORF: BLASTX 754.0), psyr_15may02_Scaffold9_revised_gene7987 (ORF: BLASTX 243.0), t_PA2563 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTACAGACGCTGAAACAGAACTGGTTCTCCAATATTCGCGGCGACCTGCTCGCCGGCCTGGTCGTCGCC 
CTGGCGCTGATCCCCGAGGCCATCGCCTTCTCCATCATCGCCGGGGTCGACCCGAAGATCGGCCTGTACGCC 
TCCTTCAGCATGGCGGTGGTGATCGCCTTCGCCGGCGGCCGTCCGGGAATGATCTCCGCCGCTACCGGCGCC 
ATGGCGCTGCTGATGGTCAACCTGGTGAAGGACCACGGCCTGCAATACCTGCTGGCGGCGACCCTGCTCTGC 
GGCGTGCTGCAGATACTCGCCGGCTACCTGCGCCTGGGCTCGCTGATGCGCTTCGTCTCGCGCTCGGTGGTG 
ACCGGTTTCGTCAATGCCCTGGCGATCCTCATCTTCATGGCCCAGCTACCCGAACTCACCGATGTCGGCTGG 
CCGGTCTACGCGATGACCGCCGCGGGCCTGGCGATCGTCTACGGCTTCCCGCACCTGCCCCGGATCGGCCGG 
CTGCTGCCCTCTCCGCTGGTATGCATCCTGGTCCTCACCGGCATATCCATCTACCTGGGCCTCGACATCCGC 
ACCGTCGGCGACATGGGTCAGTTGCCCGACAGCCTGCCGCTGTTCCTCTGGCCGGACGTGCCGCTGAACCTC 
GACACCCTGCTGATCGTCCTGCCCTACTCCGCCGCCCTGGCTGTGGTCGGCCTTCTGGAGTCGCTGATGACC 
GCCACCATCGTCGACGAGATGACCGACACCGGCAGCGACAAGAACCGCGAATGCAAGGGCCAGGGGCTGGCG 
AACATAGCCACCGGCCTGCTCGGCGGCATGGCTGGCAGCGCGATGATCGGCCAGTCGGTGATCAATGTTAAA 
TCCGGCGGGCGCAGCCGGCTCTCGACCCTGGTGGCCGGCGTCACGCTGCTGCTGATGGTGGTGTTCCTCAGC 
GACTGGGTCGGGCGGATTCCCATGGCGGCCCTGGTGGCGGTGATGATCATGGTGTCCATCGGCACCTTCCGC 
TGGGAGTCGATCCGCAACCTGAAGCGCTACCCGCTATCGACCAACCTGGTCATGCTGGTGACGGTCGGCGTG 
GTCCTCGCCACCCACAACCTGGCCTTCGGCGTGGTCGCCGGCGTTCTTCTGGCCTCGCTGTTCTTCGCCAAC 
AAGATCGGGCACTACCTCGATATCGACAGCGAACGCTCCGCCGACGGCACCCGCCGCCACTACCAGGTGAGC 
GGGCAGGTGTTCTTCGCGTCGTCCGGCAGGTTCGTCGCTGCCTTCGACCTGAAAGAGACGCTGGAGCATGTG 
CTCATCGACCTGCGCCACGCCCACCTGTGGGACGTCACCGCCGTCGCGGCACTGGACAAGGTAGTCCTGGGC 
TTTCGCCAGCGCGGCGTGCAGGCCGACGTGCTGGGCCTGAACGCCGCCAGCGCGACCCTGGTCGATCGCTTC 
GGCGCCTACGACAAGCCGGGCGCCGTGGACATTCTCTCCGATCACTGA