ViewGene
Locus Name:
GeneID:
Location:

GeneID:893
TrivialName: PA14_53050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53050
PAO1 Ortholog Locus:PA0866
Sequence Length:1419
Protein Length:472
Start: 4704400
Stop: 4702982
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04255.1|AE004521_6 (AE004521) aromatic amino acid transport protein AroP2 [Pseudomonas aeruginosa PAO1]
Identities = 471/472 (99%), Positives = 471/472 (99%)
Sequence:
ATGGACGGCCAACATCCGCATTCGGGCGAGCTCAAGCGCGGCCTGAAGAATCGTCACATCCAGTTGATCGCC
CTCGGCGGCGCCATCGGCACCGGCCTGTTCCTCGGCTCGGCCGGGGTGCTCAAGTCGGCGGGCCCGTCGATG
ATCCTCGGCTACGCCATCGCCGGTTTCATCGCTTTCATGATCATGCGCCAGCTCGGCGAGATGATCGTCGAG
GAGCCGGTTGCCGGCTCCTTCAGCCACTTCGCGCACAAGTACTGGGGCGGCTTCGCCGGCTTCCTCTCCGGC
TGGAACTGTTGGGTGCTGTACATCCTGGTCGGGATGTCGGAACTGACCGCGGTCGGCAAGTACATCCACTAC
TGGTGGCCGGAGGTGCCGACCTGGGCCACGGCGGCGTTGTTCTTCGTCGTCGTCAACGCGATCAACCTGGCC
AACGTCAAGGCCTTCGGCGAAGCCGAGTTCTGGTTCGCGATCATCAAGGTGGTGGCGATCATCGGCATGATC
CTGCTCGGCTGCTACCTGCTGTTCAGCGGCAGCGGCGGTCCGCAGGCTTCGGTGAGCAACCTCTGGGCACAC
GGCGGTTTCTTCCCCAACGGAGTGAGCGGCCTGGTGATGGCCATGGCGATCATCATGTTCTCCTTCGGTGGC
CTGGAAATGCTCGGCTTCACCGCGGCCGAGGCGGACAAGCCGAGGACGGTGATCCCGAAGGCGATCAACCAG
GTGATCTATCGCATCCTGATCTTCTACATCGGCGCCCTGGTCGTGCTGCTTTCGCTGACGCCCTGGGACAGC
CTGCTGCAGACCCTCAACGCTTCCGGCGATGCCTACAGCGGCAGCCCGTTCGTGCAGATCTTCTCGATGATC
GGCAGCGGCACCGCCGCGCACCTGCTGAACTTCGTGGTGCTCACCGCCGCACTGTCGGTGTACAACAGCGGC
ACCTATTGCAACGGCCGCATGCTTCTCGGCCTGGCCGAGCAGGGCGATGCCCCGCGCGCGCTGGCCAGGGTC
GACAAGCGCGGCGTACCGGTACGCGCCCTGGTGGTATCGGCGCTGGTGACCTTCCTCGCGGTGGTGGTGAAC
TATGTGATCCCGCACCAGGCGCTGGAGCTGCTGATGTCGCTGGTGGTGGCGGCGCTGGTGATCAACTGGGCG
ATGATCAGCATGGCGCACCTGAAGTTCCGCGCGCAGATGGACCGCCAGGGCACCCGCACGCACTTCCGCGCG
TTCTGGTATCCGTACGGCAACTACCTGTGCATGGCCTTCGTGGTGTTCATCCTCGGCGTCATGTTGCTGATC
CCCGGCATCCAGGTCTCGGTCTATGCCATCCCGGTCTGGCTGCTGGTGATGTGGGCCTGCTACCGACTCAAG
GGAGCCCCGCGGCCGATGCCGGGCCTGCGGGTGAAGCCGGTCACCGAGTGA
Translation:
MDGQHPHSGELKRGLKNRHIQLIALGGAIGTGLFLGSAGVLKSAGPSMILGYAIAGFIAFMIMRQLGEMIVE
EPVAGSFSHFAHKYWGGFAGFLSGWNCWVLYILVGMSELTAVGKYIHYWWPEVPTWATAALFFVVVNAINLA
NVKAFGEAEFWFAIIKVVAIIGMILLGCYLLFSGSGGPQASVSNLWAHGGFFPNGVSGLVMAMAIIMFSFGG
LEMLGFTAAEADKPRTVIPKAINQVIYRILIFYIGALVVLLSLTPWDSLLQTLNASGDAYSGSPFVQIFSMI
GSGTAAHLLNFVVLTAALSVYNSGTYCNGRMLLGLAEQGDAPRALARVDKRGVPVRALVVSALVTFLAVVVN
YVIPHQALELLMSLVVAALVINWAMISMAHLKFRAQMDRQGTRTHFRAFWYPYGNYLCMAFVVFILGVMLLI
PGIQVSVYAIPVWLLVMWACYRLKGAPRPMPGLRVKPVTE*
AnnotationID:902GeneID:893
AnnotatorUID: danlee
Modification Date/Time: 2004-05-03 11:11:54
Gene Name:aroP2
Confidence Code:2
GeneProduct:aromatic amino acid transport protein AroP2
Cell Localization:(4) Inner membrane protein
Synonyms:PA0866
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1113, COG0833, pfam00324, KOG1286
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1113, AnsP, Gamma-aminobutyrate permease and related permeases. Score: 543, 4e-155
COG0833, LysP, Amino acid transporters. Score: 372, 9e-104
pfam00324, AA_permease, Amino acid permease.  Score: 273, 5e-74
KOG1286, Amino acid transporters. Score: 26






   
Genomic Context:






   
Comment:


















    ReferenceID:1789




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18931




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:893
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1588
                           PA0866_tr
                           translation of PA0866
                           472
                           99.78
                           99.78
                           0
                           2447.0
     

     
     
57370
                           gb|AAG04255.1|AE004521_6
                           (AE004521) aromatic amino acid transport protein AroP2 [Pseudomonas aeruginosa PAO1]
                           472
                           99.78
                           99.78
                           0
                           2447.0
     

     
     
1589
                           PA3000_tr
                           translation of PA3000
                           472
                           80.08
                           88.55
                           3
                           2007.0
     

     
     
57372
                           gb|AAG06388.1|AE004725_1
                           (AE004725) aromatic amino acid transport protein AroP1 [Pseudomonas aeruginosa PAO1]
                           472
                           80.08
                           88.55
                           3
                           2007.0
     

     
     
57371
                           gb|AAO55336.1|
                           (AE016862) aromatic amino acid permease [Pseudomonas syringae pv. tomato str. DC3000]
                           477
                           79.87
                           87.21
                           13
                           2003.0
     

     






      

          
GC ORFID: 43895How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0866Glimmer Score: 

          
Start: 249507Stop: 250925

          
Length: 1419


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0866 translation of PA0866Homolog Bit Score 947.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7800 (ORF: BLASTX 782.0), t_PA3000 (ORF: BLASTX 779.0), t_PA0789 (ORF: BLASTX 392.0), psyr_15may02_Scaffold6_revised_gene6904 (ORF: BLASTX 387.0), t_PA5097 (ORF: BLASTX 372.0), t_PA0866 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACGGCCAACATCCGCATTCGGGCGAGCTCAAGCGCGGCCTGAAGAATCGTCACATCCAGTTGATCGCC 
CTCGGCGGCGCCATCGGCACCGGCCTGTTCCTCGGCTCGGCCGGGGTGCTCAAGTCGGCGGGCCCGTCGATG 
ATCCTCGGCTACGCCATCGCCGGTTTCATCGCTTTCATGATCATGCGCCAGCTCGGCGAGATGATCGTCGAG 
GAGCCGGTTGCCGGCTCCTTCAGCCACTTCGCGCACAAGTACTGGGGCGGCTTCGCCGGCTTCCTCTCCGGC 
TGGAACTGTTGGGTGCTGTACATCCTGGTCGGGATGTCGGAACTGACCGCGGTCGGCAAGTACATCCACTAC 
TGGTGGCCGGAGGTGCCGACCTGGGCCACGGCGGCGTTGTTCTTCGTCGTCGTCAACGCGATCAACCTGGCC 
AACGTCAAGGCCTTCGGCGAAGCCGAGTTCTGGTTCGCGATCATCAAGGTGGTGGCGATCATCGGCATGATC 
CTGCTCGGCTGCTACCTGCTGTTCAGCGGCAGCGGCGGTCCGCAGGCTTCGGTGAGCAACCTCTGGGCACAC 
GGCGGTTTCTTCCCCAACGGAGTGAGCGGCCTGGTGATGGCCATGGCGATCATCATGTTCTCCTTCGGTGGC 
CTGGAAATGCTCGGCTTCACCGCGGCCGAGGCGGACAAGCCGAGGACGGTGATCCCGAAGGCGATCAACCAG 
GTGATCTATCGCATCCTGATCTTCTACATCGGCGCCCTGGTCGTGCTGCTTTCGCTGACGCCCTGGGACAGC 
CTGCTGCAGACCCTCAACGCTTCCGGCGATGCCTACAGCGGCAGCCCGTTCGTGCAGATCTTCTCGATGATC 
GGCAGCGGCACCGCCGCGCACCTGCTGAACTTCGTGGTGCTCACCGCCGCACTGTCGGTGTACAACAGCGGC 
ACCTATTGCAACGGCCGCATGCTTCTCGGCCTGGCCGAGCAGGGCGATGCCCCGCGCGCGCTGGCCAGGGTC 
GACAAGCGCGGCGTACCGGTACGCGCCCTGGTGGTATCGGCGCTGGTGACCTTCCTCGCGGTGGTGGTGAAC 
TATGTGATCCCGCACCAGGCGCTGGAGCTGCTGATGTCGCTGGTGGTGGCGGCGCTGGTGATCAACTGGGCG 
ATGATCAGCATGGCGCACCTGAAGTTCCGCGCGCAGATGGACCGCCAGGGCACCCGCACGCACTTCCGCGCG 
TTCTGGTATCCGTACGGCAACTACCTGTGCATGGCCTTCGTGGTGTTCATCCTCGGCGTCATGTTGCTGATC 
CCCGGCATCCAGGTCTCGGTCTATGCCATCCCGGTCTGGCTGCTGGTGATGTGGGCCTGCTACCGACTCAAG 
GGAGCCCCGCGGCCGATGCCGGGCCTGCGGGTGAAGCCGGTCACCGAGTGA