ViewGene
Locus Name:
GeneID:
Location:

GeneID:891
TrivialName: PA14_11790
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11790
PAO1 Ortholog Locus:PA4023
Sequence Length:1449
Protein Length:482
Start: 1022248
Stop: 1020800
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07410.1|AE004819_3 (AE004819) probable transport protein [Pseudomonas aeruginosa PAO1]
Identities = 481/482 (99%), Positives = 482/482 (100%)
Sequence:
ATGTCCCTCGAACAAACCGGCCATGCGCCCGCAACTTCCGGGGTCGACTTCGAAAGCGTCGACGCCGACTAC
TTCCAACACCGTCAACTGAAGAAAGGCGCCGCCGGCTGGGTCCTGCTGGTCGGGCTCGGCGTCGCCTACGTG
ATCTCCGGCGACTACGCCGGCTGGAACTTCGGCCTGGCCCAGGGCGGCTGGGGCGGGATGTTCCTCGCCACC
CTGCTGATGGCCACCATGTACCTGTGCATGTGCTTCTCGCTCGCCGAGCTGTCTTCGATGATCCCTACCGCC
GGCGGCGGCTACGGCTTCGCCCGCAGCGCCTTCGGGCCCTGGGGCGGCTTTCTCACCGGCACCGCGATCCTC
ATCGAATACGCCATCGCCCCGGCGGCCATCGCCTGCTTCATCGGCGCCTACTGCGAGTCGCTGTTCGGCGTC
GGCGGCTGGCTGATCTACCTGGTGTTCTACATCGTGTTCATCGGCATCCACATCCTCGGCGCCGGCGAGGCG
CTGAAGCTGATGTTCGTCATCACCGCGGTGGCGGCCATCGCCCTCGGCGTGTTCATTGTCGCGATGGTTCCG
CACTTCGACTCGGCCAACCTGTTCAACATCCCGCAGACCGCGGCGACCGGCGCCAGCAGCTTCCTGCCGTTC
GGCTATGTCGGGGTCTGGGCGGCGATCCCCTACGCGATCTGGTTCTTCCTCGCCGTCGAAGGCGTGCCGCTG
GCCGCCGAGGAAACCAAGAACCCCAAGCGCGACCTGCCGCGCGGACTGATCGGCGCCATGTTGGTGCTTCTC
GCCTTCGCCGCACTGATTCTGGTCGTCGGTCCCGGGGCCGCCGGAGCCAAGGAGCTGATGGGCTCGGGCAAT
CCCCTGGTGGAAGCGCTGGAGTCGGCCTACAAGGGTTCGACCTGGATGAGCCAGTTCGTCAACCTGGTCGGC
CTGGCCGGGCTGATCGCCAGCTTCTTCTCGATCATCTATGCCTACTCGCGGCAGATCTTCGCCCTCTCCCGC
GCCGGCTACCTGCCGCGCAGCCTCTCGCTGACCAACCGCAAGAAGGCGCCGGTACTGGCCCTGGTGGTGCCG
GGGGTGATCGGCTTCGGCCTGTCGCTGACCGGCCAGGGCGACCTGCTGATCCTGGTCGCGGTGTTCGGCGCG
ACCATCTCCTACGTGCTGATGATGGCCGCGCACATCACCCTGCGCATCCGCCGCCCGGACATGCAGCGCCCC
TACCGCACCCCTGGCGGCATCCTCACCTCCGGCGTAGCCCTGGCGCTGGCCTGCGTCGCGGTGGTCGCCGGC
TTCCTGGTCGACCCGCGGGTCGTGGTCGGCGCGGTGGCGATCTACGCTGTACTGATCGGCTACTTCGCCCTG
TACAGTCGGCATCACCTGGTGTCCGGCACCCCGGAAGAGGAGTTCGCCGCGATCCAGGCGGCGGAACAGGAC
CTGCGCTGA
Translation:
MSLEQTGHAPATSGVDFESVDADYFQHRQLKKGAAGWVLLVGLGVAYVISGDYAGWNFGLAQGGWGGMFLAT
LLMATMYLCMCFSLAELSSMIPTAGGGYGFARSAFGPWGGFLTGTAILIEYAIAPAAIACFIGAYCESLFGV
GGWLIYLVFYIVFIGIHILGAGEALKLMFVITAVAAIALGVFIVAMVPHFDSANLFNIPQTAATGASSFLPF
GYVGVWAAIPYAIWFFLAVEGVPLAAEETKNPKRDLPRGLIGAMLVLLAFAALILVVGPGAAGAKELMGSGN
PLVEALESAYKGSTWMSQFVNLVGLAGLIASFFSIIYAYSRQIFALSRAGYLPRSLSLTNRKKAPVLALVVP
GVIGFGLSLTGQGDLLILVAVFGATISYVLMMAAHITLRIRRPDMQRPYRTPGGILTSGVALALACVAVVAG
FLVDPRVVVGAVAIYAVLIGYFALYSRHHLVSGTPEEEFAAIQAAEQDLR*
AnnotationID:900GeneID:891
AnnotatorUID: urbach
Modification Date/Time: 2004-09-14 16:04:10
Gene Name:
Confidence Code:3
GeneProduct:putative amino acid transporter
Cell Localization:(6) Outer membrane protein
Synonyms:
Cell Localization Confidence Code:4
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:KOG1286,COG0531,COG0833
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
gnl|CDD|19075 KOG1286, KOG1286, Amino acid transporters
[Amino acid transport and metabolism]
Length = 554
Score =  142 bits (360), Expect = 2e-34
Identities = 109/454 (24%), Positives = 186/454 (40%), Gaps = 34/454 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1785




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18927




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:891
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1586
                           PA4023_tr
                           translation of PA4023
                           482
                           99.79
                           99.99
                           0
                           2452.0
     

     
     
57364
                           gb|AAG07410.1|AE004819_3
                           (AE004819) probable transport protein [Pseudomonas aeruginosa PAO1]
                           482
                           99.79
                           99.99
                           0
                           2452.0
     

     
     
57365
                           gb|AAN66171.1|AE016244_12
                           (AE016776) ethanolamine transporter [Pseudomonas putida KT2440]
                           482
                           85.47
                           90.87
                           0
                           2141.0
     

     
     
57366
                           gb|AAC37135.1|
                           (L24492) ethanolamine permease [Rhodococcus erythropolis]
                           493
                           60.64
                           75.86
                           16
                           1518.0
     

     






      

          
GC ORFID: 43893How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4023Glimmer Score: 

          
Start: 3931689Stop: 3933137

          
Length: 1449


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4023 translation of PA4023Homolog Bit Score 949.0

          
Other Homologs:  t_PA4023 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCCTCGAACAAACCGGCCATGCGCCCGCAACTTCCGGGGTCGACTTCGAAAGCGTCGACGCCGACTAC 
TTCCAACACCGTCAACTGAAGAAAGGCGCCGCCGGCTGGGTCCTGCTGGTCGGGCTCGGCGTCGCCTACGTG 
ATCTCCGGCGACTACGCCGGCTGGAACTTCGGCCTGGCCCAGGGCGGCTGGGGCGGGATGTTCCTCGCCACC 
CTGCTGATGGCCACCATGTACCTGTGCATGTGCTTCTCGCTCGCCGAGCTGTCTTCGATGATCCCTACCGCC 
GGCGGCGGCTACGGCTTCGCCCGCAGCGCCTTCGGGCCCTGGGGCGGCTTTCTCACCGGCACCGCGATCCTC 
ATCGAATACGCCATCGCCCCGGCGGCCATCGCCTGCTTCATCGGCGCCTACTGCGAGTCGCTGTTCGGCGTC 
GGCGGCTGGCTGATCTACCTGGTGTTCTACATCGTGTTCATCGGCATCCACATCCTCGGCGCCGGCGAGGCG 
CTGAAGCTGATGTTCGTCATCACCGCGGTGGCGGCCATCGCCCTCGGCGTGTTCATTGTCGCGATGGTTCCG 
CACTTCGACTCGGCCAACCTGTTCAACATCCCGCAGACCGCGGCGACCGGCGCCAGCAGCTTCCTGCCGTTC 
GGCTATGTCGGGGTCTGGGCGGCGATCCCCTACGCGATCTGGTTCTTCCTCGCCGTCGAAGGCGTGCCGCTG 
GCCGCCGAGGAAACCAAGAACCCCAAGCGCGACCTGCCGCGCGGACTGATCGGCGCCATGTTGGTGCTTCTC 
GCCTTCGCCGCACTGATTCTGGTCGTCGGTCCCGGGGCCGCCGGAGCCAAGGAGCTGATGGGCTCGGGCAAT 
CCCCTGGTGGAAGCGCTGGAGTCGGCCTACAAGGGTTCGACCTGGATGAGCCAGTTCGTCAACCTGGTCGGC 
CTGGCCGGGCTGATCGCCAGCTTCTTCTCGATCATCTATGCCTACTCGCGGCAGATCTTCGCCCTCTCCCGC 
GCCGGCTACCTGCCGCGCAGCCTCTCGCTGACCAACCGCAAGAAGGCGCCGGTACTGGCCCTGGTGGTGCCG 
GGGGTGATCGGCTTCGGCCTGTCGCTGACCGGCCAGGGCGACCTGCTGATCCTGGTCGCGGTGTTCGGCGCG 
ACCATCTCCTACGTGCTGATGATGGCCGCGCACATCACCCTGCGCATCCGCCGCCCGGACATGCAGCGCCCC 
TACCGCACCCCTGGCGGCATCCTCACCTCCGGCGTAGCCCTGGCGCTGGCCTGCGTCGCGGTGGTCGCCGGC 
TTCCTGGTCGACCCGCGGGTCGTGGTCGGCGCGGTGGCGATCTACGCTGTACTGATCGGCTACTTCGCCCTG 
TACAGTCGGCATCACCTGGTGTCCGGCACCCCGGAAGAGGAGTTCGCCGCGATCCAGGCGGCGGAACAGGAC 
CTGCGCTGA