ViewGene

Locus Name:
GeneID:
Location:

GeneID:889
TrivialName: PA14_63500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63500
PAO1 Ortholog Locus:PA4805
Sequence Length:1407
Protein Length:468
Start: 5662194
Stop: 5660788
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08191.1|AE004893_9 (AE004893) probable class III aminotransferase [Pseudomonas aeruginosa PAO1]
Identities = 465/468 (99%), Positives = 468/468 (100%)
Sequence:
ATGAACGCAAGACTGCACGCCACGTCCCCCCTCGGCGACGCCGACCTGGTCCGTGCCGACCAGGCCCACTAC
ATGCACGGCTACCACGTGTTCGACGACCACCGCGTCAACGGCTCGCTGAACATCGCCGCCGGCGACGGCGCC
TATATCTACGACACCGCCGGCAACCGCTACCTCGACGCGGTGGGCGGCATGTGGTGCACCAACATCGGCCTG
GGGCGCGAGGAAATGGCTCGCACCGTGGCCGAGCAGACCCGCCTGCTGGCCTATTCCAATCCCTTCTGCGAC
ATGGCCAACCCGCGCGCCATCGAACTCTGCCGCAAGCTCGCCGAGCTGGCCCCCGGCGACCTCGACCACGTG
TTCCTCACCACCGGCGGTTCCACCGCCGTGGACACCGCGATCCGCCTCATGCACTACTACCAGAACTGCCGC
GGCAAGCGCGCCAAGAAGCACGTCATCACGCGGATCAACGCCTACCACGGCTCGACCTTCCTCGGCATGTCG
CTGGGCGGCAAGAGCGCCGACCGGCCGGCCGAGTTCGACTTCCTCGACGAGCGCATCCACCACCTCGCCTGT
CCCTACTACTACCGCGCTCCGGAAGGAGTGGGCGAGGCCGAGTTCCTCGATGGCCTGGTGGAGGAGTTCGAA
CGCAAGATCCTCGAACTGGGCGCCGACCGGGTGGGGGCGTTCATCTCCGAACCGGTGTTCGGCTCCGGCGGC
GTGATCGTCCCGCCCGCGGGCTACCACCGGCGGATGTGGAAGCTGTGCCAGCGCTACGACGTGCTGTACATC
TCCGACGAAGTGGTGACCTCCTTCGGCCGCCTCGGCCACTTCTTCGCCAGCCAGGCGGTGTTCGGCGTACAG
CCGGACATCATCCTCACCGCCAAGGGCCTCACCTCCGGCTACCAGCCGCTGGGCGCGTGCATCTTCTCCCGG
CGCATCTGGGAGGTGATCGCCGAGCCGGACAAGGGACGCTGCTTCAGCCATGGTTTCACCTACTCCGGCCAC
CCGGTGGCCTGCGCGGCGGCGCTGAAGAACATCGAGATCATCGAGCGCGAGGGCCTGCTCGCCCACGCCGAC
GAGGTCGGCCGCTACTTCGAGGAGCGCCTGCAAAGCCTCCGCGACCTGCCCATCGTCGGCGACGTGCGCGGG
ATGCGCTTCATGGCCTGTGTCGAGTTCGTCGCCGACAAGGCGAGCAAGGCGCTGTTCCCGGAAAGCCTGAAC
ATCGGCGAGTGGGTCCACCTGCGGGCGCAGAAGCGCGGCCTGCTGGTTCGTCCGATCGTCCACCTGAACGTG
ATGTCGCCGCCGCTGATCCTCACCCGCGAACAGGTCGATACCGTGGTCCGGGTGCTGCGCGAGAGCATCGAG
GAAACCGTGGAGGACCTTGTCCGCGCCGGTCACCGGTAA
Translation:
MNARLHATSPLGDADLVRADQAHYMHGYHVFDDHRVNGSLNIAAGDGAYIYDTAGNRYLDAVGGMWCTNIGL
GREEMARTVAEQTRLLAYSNPFCDMANPRAIELCRKLAELAPGDLDHVFLTTGGSTAVDTAIRLMHYYQNCR
GKRAKKHVITRINAYHGSTFLGMSLGGKSADRPAEFDFLDERIHHLACPYYYRAPEGVGEAEFLDGLVEEFE
RKILELGADRVGAFISEPVFGSGGVIVPPAGYHRRMWKLCQRYDVLYISDEVVTSFGRLGHFFASQAVFGVQ
PDIILTAKGLTSGYQPLGACIFSRRIWEVIAEPDKGRCFSHGFTYSGHPVACAAALKNIEIIEREGLLAHAD
EVGRYFEERLQSLRDLPIVGDVRGMRFMACVEFVADKASKALFPESLNIGEWVHLRAQKRGLLVRPIVHLNV
MSPPLILTREQVDTVVRVLRESIEETVEDLVRAGHR*
AnnotationID:898GeneID:889
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 06:06:23
Gene Name:
Confidence Code:3
GeneProduct:putative class III aminotransferase
Cell Localization:()
Synonyms:PA4805
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0161,pfam00202,COG0160,COG4992
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN69315.1|AE016568_10 (AE016788) aminotransferase, class III [Pseudomonas putida KT2440]
          Length = 470

 Score =  672 bits (1733), Expect = 0.0
 Identities = 324/451 (71%), Positives = 374/451 (82%)

Structural Features:
COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 
[Coenzyme metabolism]
CD-Length = 449 residues,  99.6% aligned
Score =  513 bits (1324), Expect = 1e-146
Identities = 200/453 (44%), Positives = 269/453 (59%), Gaps = 9/453 (1%)

COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases 
[Amino acid transport and metabolism]
CD-Length = 447 residues,  95.7% aligned
Score =  324 bits (831), Expect = 2e-89
Identities = 165/452 (36%), Positives = 235/452 (51%), Gaps = 31/452 (6%)

pfam00202, Aminotran_3, Aminotransferase class-III.
CD-Length = 402 residues,  98.0% aligned
Score =  276 bits (707), Expect = 4e-75
Identities = 143/425 (33%), Positives = 207/425 (48%), Gaps = 38/425 (8%)

COG4992, ArgD, Ornithine/acetylornithine aminotransferase 
[Amino acid transport and metabolism]
CD-Length = 404 residues,  95.3% aligned
Score =  262 bits (671), Expect = 7e-71
Identities = 133/441 (30%), Positives = 197/441 (44%), Gaps = 60/441 (13%)
Genomic Context:
Comment:
ReferenceID:1781
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18923
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35232
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:889_cdd.html
URL:
Homologs By Global Alignment
Gene ID:889

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1582 PA4805_tr translation of PA4805 468 99.35 99.99 0 2456.0
57200 gb|AAG08191.1|AE004893_9 (AE004893) probable class III aminotransferase [Pseudomonas aeruginosa PAO1] 468 99.35 99.99 0 2456.0
57201 gb|AAN69315.1|AE016568_10 (AE016788) aminotransferase, class III [Pseudomonas putida KT2440] 476 68.27 79.20 14 1721.0
57202 dbj|BAB50511.1| (AP003002) aminotransferase [Mesorhizobium loti] 479 44.67 61.79 18 1053.0
57204 dbj|BAB48636.1| (AP002996) probable aminotransferase [Mesorhizobium loti] 479 41.12 56.36 31 864.0
GC ORFID: 43891How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4805Glimmer Score:
Start: 4925874Stop: 4924468
Length: 1407
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA4805 translation of PA4805Homolog Bit Score 950.0
Other Homologs: t_PA4805 (ORF: GLIMMER)
GC ORF Sequence
ATGAACGCAAGACTGCACGCCACGTCCCCCCTCGGCGACGCCGACCTGGTCCGTGCCGACCAGGCCCACTAC
ATGCACGGCTACCACGTGTTCGACGACCACCGCGTCAACGGCTCGCTGAACATCGCCGCCGGCGACGGCGCC
TATATCTACGACACCGCCGGCAACCGCTACCTCGACGCGGTGGGCGGCATGTGGTGCACCAACATCGGCCTG
GGGCGCGAGGAAATGGCTCGCACCGTGGCCGAGCAGACCCGCCTGCTGGCCTATTCCAATCCCTTCTGCGAC
ATGGCCAACCCGCGCGCCATCGAACTCTGCCGCAAGCTCGCCGAGCTGGCCCCCGGCGACCTCGACCACGTG
TTCCTCACCACCGGCGGTTCCACCGCCGTGGACACCGCGATCCGCCTCATGCACTACTACCAGAACTGCCGC
GGCAAGCGCGCCAAGAAGCACGTCATCACGCGGATCAACGCCTACCACGGCTCGACCTTCCTCGGCATGTCG
CTGGGCGGCAAGAGCGCCGACCGGCCGGCCGAGTTCGACTTCCTCGACGAGCGCATCCACCACCTCGCCTGT
CCCTACTACTACCGCGCTCCGGAAGGAGTGGGCGAGGCCGAGTTCCTCGATGGCCTGGTGGAGGAGTTCGAA
CGCAAGATCCTCGAACTGGGCGCCGACCGGGTGGGGGCGTTCATCTCCGAACCGGTGTTCGGCTCCGGCGGC
GTGATCGTCCCGCCCGCGGGCTACCACCGGCGGATGTGGAAGCTGTGCCAGCGCTACGACGTGCTGTACATC
TCCGACGAAGTGGTGACCTCCTTCGGCCGCCTCGGCCACTTCTTCGCCAGCCAGGCGGTGTTCGGCGTACAG
CCGGACATCATCCTCACCGCCAAGGGCCTCACCTCCGGCTACCAGCCGCTGGGCGCGTGCATCTTCTCCCGG
CGCATCTGGGAGGTGATCGCCGAGCCGGACAAGGGACGCTGCTTCAGCCATGGTTTCACCTACTCCGGCCAC
CCGGTGGCCTGCGCGGCGGCGCTGAAGAACATCGAGATCATCGAGCGCGAGGGCCTGCTCGCCCACGCCGAC
GAGGTCGGCCGCTACTTCGAGGAGCGCCTGCAAAGCCTCCGCGACCTGCCCATCGTCGGCGACGTGCGCGGG
ATGCGCTTCATGGCCTGTGTCGAGTTCGTCGCCGACAAGGCGAGCAAGGCGCTGTTCCCGGAAAGCCTGAAC
ATCGGCGAGTGGGTCCACCTGCGGGCGCAGAAGCGCGGCCTGCTGGTTCGTCCGATCGTCCACCTGAACGTG
ATGTCGCCGCCGCTGATCCTCACCCGCGAACAGGTCGATACCGTGGTCCGGGTGCTGCGCGAGAGCATCGAG
GAAACCGTGGAGGACCTTGTCCGCGCCGGTCACCGGTAA