ViewGene

Locus Name:
GeneID:
Location:

GeneID: 887

TrivialName: PA14_24180

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_24180

PAO1 Ortholog Locus: PA3091

Sequence Length: 1440

Protein Length: 479

Start: 2097863

Stop: 2099302

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG06479.1|AE004733_6 (AE004733) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 475/479 (99%), Positives = 475/479 (99%)

Sequence:

ATGCGGGCCGCCTCGCCAGGCGTTCGAGGGTTAGCGATGAGCATGCAGAAAAAGCCACAGATGGCGGAGGCC
GTGCTGTTCTTCAACGACAGCGGCGTCTGCAAGGAAATGCTGTATCCCGAATTCGAGGCGCTGCTCGATGGT
CTGGTGCGCATGCCGGAATACGCCGACCGGCAGATGCACCTGGCCTATGTGTTGATCAATCCGCGCCTGCAG
GCGCGGGCAGCGGTGTTCTTCTATCTCGATTTCGACGAGCAGGGCGGCGCCGACACCGGCTGGAACCTGCCT
CTGCGCAACCTCGCCGAGCGCGCCGGACGCGGCCCCGACATGGGCGGCGGGCCGATCCGCCTGGCCTGTCGC
AGCCAGTGCCCGGTGTCCTGGCACCAGATGCACCTGTGGGACCCGGAGAGCAGCGCCGGACGCAACCATTTC
GTACTCATCCGCGACGCGCTCAGGCGCAACCAGCTCGGCCTGCTGGTGGACGAGGAGCCTGCCGCGGTGGAG
CCGCAGCGGCTGCAGATGGCCGCCGAAGAACAATGGTACGCCGCCGGTCCCGCCGCCCCGAAGGCAGCGCCC
GCGGAGCCTCCGCGCAAGCAGGAGGACGAGCAGGCGGCGCGCCTGGCGCAACTGGTCAAGCAGCAGCGGCAA
CAGCTCGCCGCCCTGGCCCGGCAGCACGAGCAGCGCCTGGCCGGGCTCGCCCGGCAGCACGAAGAGGAACTG
GCCAGGCGCGAACAGGACGCCCGCGGGCAACTGGACATCCTGCGCAGCGAAGTGCTCAGCCTGCAACAGGCC
CTGGAACGGCAGGCGCGGGAGAACGCCGAGTTGCAGCAGCGTCTGCTGGAGCAGGGCGAGCAGTTCCAGCGC
AACCGCGAGGAACTGACCCGGCAACTGCGTTTCATCGAGAACCAGGGGCGCAACGAGACCGACCTGCTGCGC
TCGGAGTTCGCCGACGAACTGGAGGCTCGGGTGGCGGTGGCGGTGGCCGGCTACAAGGAGCAGGTCTCGATC
CGCGACGTCGAACTGGCCTACCGCAACGAGCTGGACCAGCAACTGGAGCAGGAACTGGCCGAGCTGCGCGCC
GAGCGCGACCGTCTGGCCGCCCAGGGGCCGGAGCAACTGCTGGAGCGTCTATCCGGCCAGGGCGTGGTATTC
GTCGCCTACCATCCCGGCGCCGGGCACCTGACCATCCCCTTGCAGGACATCCCGCGTTACCAGGACAATCCG
CTGGCCTACGCGGCGGCCAAGTGCTTCGTCTCCGAGAGCCAGTACCGCCAGTGGCTGGACCACTTCCAGCAG
CCGCGCTGCGAGGCGCTGCTGCCCGGCGGCGAACGCTGCAACCTGCCGCTCGACCGGGTCGACAACCCGGCG
CGCTTCGTCGCCGGCGACACCAACTGCTGCGCCCGGCACAAGACCACGGGGCGCCTGCGCACCGTGAGCTGA

Translation:

MRAASPGVRGLAMSMQKKPQMAEAVLFFNDSGVCKEMLYPEFEALLDGLVRMPEYADRQMHLAYVLINPRLQ
ARAAVFFYLDFDEQGGADTGWNLPLRNLAERAGRGPDMGGGPIRLACRSQCPVSWHQMHLWDPESSAGRNHF
VLIRDALRRNQLGLLVDEEPAAVEPQRLQMAAEEQWYAAGPAAPKAAPAEPPRKQEDEQAARLAQLVKQQRQ
QLAALARQHEQRLAGLARQHEEELARREQDARGQLDILRSEVLSLQQALERQARENAELQQRLLEQGEQFQR
NREELTRQLRFIENQGRNETDLLRSEFADELEARVAVAVAGYKEQVSIRDVELAYRNELDQQLEQELAELRA
ERDRLAAQGPEQLLERLSGQGVVFVAYHPGAGHLTIPLQDIPRYQDNPLAYAAAKCFVSESQYRQWLDHFQQ
PRCEALLPGGERCNLPLDRVDNPARFVAGDTNCCARHKTTGRLRTVS*

AnnotationID:896 GeneID:887

AnnotatorUID: diggins

Modification Date/Time: 2006-01-15 16:04:11

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA3091

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:1777

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:18919

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:887

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

1580 PA3091_tr translation of PA3091 479 99.16 99.16 0 2455.0

57134 gb|AAG06479.1|AE004733_6 (AE004733) hypothetical protein PA3091 [Pseudomonas aeruginosa PAO1] 479 99.16 99.16 0 2455.0

GC ORFID: `43889`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA3091`	Glimmer Score:
Start: `2856068`	Stop: `2854629`
Length: `1440`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA3091 translation of PA3091`	Homolog Bit Score `950.0`
Other Homologs: `t_PA3091 (ORF: GLIMMER)`
GC ORF Sequence
ATGCGGGCCGCCTCGCCAGGCGTTCGAGGGTTAGCGATGAGCATGCAGAAAAAGCCACAGATGGCGGAGGCC GTGCTGTTCTTCAACGACAGCGGCGTCTGCAAGGAAATGCTGTATCCCGAATTCGAGGCGCTGCTCGATGGT CTGGTGCGCATGCCGGAATACGCCGACCGGCAGATGCACCTGGCCTATGTGTTGATCAATCCGCGCCTGCAG GCGCGGGCAGCGGTGTTCTTCTATCTCGATTTCGACGAGCAGGGCGGCGCCGACACCGGCTGGAACCTGCCT CTGCGCAACCTCGCCGAGCGCGCCGGACGCGGCCCCGACATGGGCGGCGGGCCGATCCGCCTGGCCTGTCGC AGCCAGTGCCCGGTGTCCTGGCACCAGATGCACCTGTGGGACCCGGAGAGCAGCGCCGGACGCAACCATTTC GTACTCATCCGCGACGCGCTCAGGCGCAACCAGCTCGGCCTGCTGGTGGACGAGGAGCCTGCCGCGGTGGAG CCGCAGCGGCTGCAGATGGCCGCCGAAGAACAATGGTACGCCGCCGGTCCCGCCGCCCCGAAGGCAGCGCCC GCGGAGCCTCCGCGCAAGCAGGAGGACGAGCAGGCGGCGCGCCTGGCGCAACTGGTCAAGCAGCAGCGGCAA CAGCTCGCCGCCCTGGCCCGGCAGCACGAGCAGCGCCTGGCCGGGCTCGCCCGGCAGCACGAAGAGGAACTG GCCAGGCGCGAACAGGACGCCCGCGGGCAACTGGACATCCTGCGCAGCGAAGTGCTCAGCCTGCAACAGGCC CTGGAACGGCAGGCGCGGGAGAACGCCGAGTTGCAGCAGCGTCTGCTGGAGCAGGGCGAGCAGTTCCAGCGC AACCGCGAGGAACTGACCCGGCAACTGCGTTTCATCGAGAACCAGGGGCGCAACGAGACCGACCTGCTGCGC TCGGAGTTCGCCGACGAACTGGAGGCTCGGGTGGCGGTGGCGGTGGCCGGCTACAAGGAGCAGGTCTCGATC CGCGACGTCGAACTGGCCTACCGCAACGAGCTGGACCAGCAACTGGAGCAGGAACTGGCCGAGCTGCGCGCC GAGCGCGACCGTCTGGCCGCCCAGGGGCCGGAGCAACTGCTGGAGCGTCTATCCGGCCAGGGCGTGGTATTC GTCGCCTACCATCCCGGCGCCGGGCACCTGACCATCCCCTTGCAGGACATCCCGCGTTACCAGGACAATCCG CTGGCCTACGCGGCGGCCAAGTGCTTCGTCTCCGAGAGCCAGTACCGCCAGTGGCTGGACCACTTCCAGCAG CCGCGCTGCGAGGCGCTGCTGCCCGGCGGCGAACGCTGCAACCTGCCGCTCGACCGGGTCGACAACCCGGCG CGCTTCGTCGCCGGCGACACCAACTGCTGCGCCCGGCACAAGACCACGGGGCGCCTGCGCACCGTGAGCTGA