ViewGene
Locus Name:
GeneID:
Location:

GeneID:886
TrivialName: PA14_26590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26590
PAO1 Ortholog Locus:PA2897
Sequence Length:1440
Protein Length:479
Start: 2316267
Stop: 2317706
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06285.1|AE004716_3 (AE004716) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 479/479 (100%), Positives = 479/479 (100%)
Sequence:
ATGACCAATCTGCTGCTTTACCAACGCATCGCCCAGCAGTTGGCCGAGGACATTCGCCGTGGCGTCTACCAG
CCGGGCGAGCGGGTACCGTCGGTGCGCAAGCTCAGCACCCAGTTGAACGTCAGCCACGCCACCGTGCTGCAG
GCCTACGCCACCCTCGAGGACCAGGGACTGATCCGTGCCCGTCCGCAATCCGGCTTCTACGTCCACCGCACC
CCGGCGCTGACCGCGCCGACCCCGGATATCGCGCGGGTCGAGCGTCCCGGCCTGGTCACCCGCAGCAGCATC
ATCAACCAGGTGCTCGCCGAGTCCCGCCGCGAAGGGGTATTCCCGCTCGGCGCGGCGGTGCCGCACGTGGAC
TACCTGCCGGTGCGCGCCTTGCACCAGCAACTGGCCAAGGTCACCCGCTTCCAGAGCCCACGGGCGTTCAGC
TACATGTTCAGCCCCGGTTTCGAGCCGCTCCGGCGGCAGGTGGCGATCCGCATGCGCGACGCCGGCGTGGTG
GTCGACCCGTCGCAGGTGACCATCACCCACGGCTGCGTGGATGCGATCCACATGGCCCTGCGGGTGCTGACC
CGTCCCGGCGACCTGATCGCCACCGAGTCGCCGAGCTACTACGGCCTGCTGCAACTGGCCGACGTGCTGGGC
CTGAAGGTCATCGAGATCCCCAGCGACCCGCGCACCGGGATCAGCCTGGAGGCGCTGCAACTGGCGGCCAAC
CAGTGGTCGATCAAGGCCTTGGTGCTGACCGCGCGGCTGAGCAATCCCTTCGGTGGGACGATTCCCGAGGAT
CGCCAGAAGCAACTGCTGAAACTGACCGCCGAACACAACATCGGGGTGGTCGAGGACGACATCTACGGCGAA
CTGATGTTCGACCAGGGCCAGGCGCGCTCGCTCAAGTCCCACGACCGCGACGGCCGGGTGATCTACTGCTCG
AGTTTCTCCAAGACCATCTCGCCCGGCGTACGCATCGGCTGGATCATCGCCGAGCGCTACCAGGAGGAGATC
CGTCGCCTGCAGACCTTCACCACCCATTCGGCCTGCACCGTGACCCAGATGGGCGTCGCCGCCTACTTGGAG
AACGGCGGCTACGACCGCCACCTGCGCTACATCCGCCAGGAGTACCGGAAGAACATGACCGCCTACCAGTTG
GCGGTGCAGCAGTACTTCCCGGAGGGGACGCAGATGACCCGGCCCAAGGGCGGCTTCATCCTCTGGGTCAGC
CTGCCGGCCAAGGTCAACACCAAGGAACTCCACGTGCGGGCCCTGGAGCAGGGCATCAGCATCGCCCCGGGG
CTGATCTTCAGCAACACCGAGCAGTTCAACAACTGCCTGCGGCTGACCTGCGGGATTCCCTGGAACCGCGAG
GCGGAGCGGGCGATCATGACCCTCGGCATGCTTGCCGGGCAGCTTTGCCAGGAAGGCCTTATCGCCGCCTGA
Translation:
MTNLLLYQRIAQQLAEDIRRGVYQPGERVPSVRKLSTQLNVSHATVLQAYATLEDQGLIRARPQSGFYVHRT
PALTAPTPDIARVERPGLVTRSSIINQVLAESRREGVFPLGAAVPHVDYLPVRALHQQLAKVTRFQSPRAFS
YMFSPGFEPLRRQVAIRMRDAGVVVDPSQVTITHGCVDAIHMALRVLTRPGDLIATESPSYYGLLQLADVLG
LKVIEIPSDPRTGISLEALQLAANQWSIKALVLTARLSNPFGGTIPEDRQKQLLKLTAEHNIGVVEDDIYGE
LMFDQGQARSLKSHDRDGRVIYCSSFSKTISPGVRIGWIIAERYQEEIRRLQTFTTHSACTVTQMGVAAYLE
NGGYDRHLRYIRQEYRKNMTAYQLAVQQYFPEGTQMTRPKGGFILWVSLPAKVNTKELHVRALEQGISIAPG
LIFSNTEQFNNCLRLTCGIPWNREAERAIMTLGMLAGQLCQEGLIAA*
AnnotationID:895GeneID:886
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 12:12:31
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, GntR family
Cell Localization:()
Synonyms:PA2897
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1167
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69778.1|AE016614_4 (AE016789) transcriptional regulator, GntR family [Pseudomonas
           putida KT2440]
          Length = 530

 Score =  828 bits (2139), Expect = 0.0
 Identities = 402/474 (84%), Positives = 449/474 (94%)

>gb|AAO55706.1| (AE016863) transcriptional regulator, GntR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 479

 Score =  825 bits (2132), Expect = 0.0
 Identities = 408/476 (85%), Positives = 446/476 (93%)








 
Structural Features:
COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain 
and an aminotransferase domain (MocR family) and their eukaryotic orthologs 
[Transcription / Amino acid transport and metabolism]







   
Genomic Context:






   
Comment:


















    ReferenceID:1775




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18917




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36134




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:886_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:886
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1578
                           PA2897_tr
                           translation of PA2897
                           479
                           99.99
                           99.99
                           0
                           2455.0
     

     
     
57128
                           gb|AAG06285.1|AE004716_3
                           (AE004716) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           479
                           99.99
                           99.99
                           0
                           2455.0
     

     
     
57130
                           gb|AAO55706.1|
                           (AE016863) transcriptional regulator, GntR family [Pseudomonas syringae pv. tomato str. DC3000]
                           479
                           85.17
                           93.11
                           0
                           2127.0
     

     
     
57129
                           gb|AAN69778.1|AE016614_4
                           (AE016789) transcriptional regulator, GntR family [Pseudomonas putida KT2440]
                           530
                           75.84
                           84.90
                           51
                           2138.0
     

     
     
57131
                           gb|AAR33353.1|
                           (AE017207) transcriptional regulator, GntR family/aminotransferase class-I [Geobacter sulfurreducens PCA]
                           486
                           42.79
                           62.55
                           15
                           1043.0
     

     






      

          
GC ORFID: 43888How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2897Glimmer Score: 

          
Start: 2637659Stop: 2636220

          
Length: 1440


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2897 translation of PA2897Homolog Bit Score 950.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene985 (ORF: BLASTX 824.0), t_PA4132 (ORF: BLASTX 365.0), t_PA2897 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCAATCTGCTGCTTTACCAACGCATCGCCCAGCAGTTGGCCGAGGACATTCGCCGTGGCGTCTACCAG 
CCGGGCGAGCGGGTACCGTCGGTGCGCAAGCTCAGCACCCAGTTGAACGTCAGCCACGCCACCGTGCTGCAG 
GCCTACGCCACCCTCGAGGACCAGGGACTGATCCGTGCCCGTCCGCAATCCGGCTTCTACGTCCACCGCACC 
CCGGCGCTGACCGCGCCGACCCCGGATATCGCGCGGGTCGAGCGTCCCGGCCTGGTCACCCGCAGCAGCATC 
ATCAACCAGGTGCTCGCCGAGTCCCGCCGCGAAGGGGTATTCCCGCTCGGCGCGGCGGTGCCGCACGTGGAC 
TACCTGCCGGTGCGCGCCTTGCACCAGCAACTGGCCAAGGTCACCCGCTTCCAGAGCCCACGGGCGTTCAGC 
TACATGTTCAGCCCCGGTTTCGAGCCGCTCCGGCGGCAGGTGGCGATCCGCATGCGCGACGCCGGCGTGGTG 
GTCGACCCGTCGCAGGTGACCATCACCCACGGCTGCGTGGATGCGATCCACATGGCCCTGCGGGTGCTGACC 
CGTCCCGGCGACCTGATCGCCACCGAGTCGCCGAGCTACTACGGCCTGCTGCAACTGGCCGACGTGCTGGGC 
CTGAAGGTCATCGAGATCCCCAGCGACCCGCGCACCGGGATCAGCCTGGAGGCGCTGCAACTGGCGGCCAAC 
CAGTGGTCGATCAAGGCCTTGGTGCTGACCGCGCGGCTGAGCAATCCCTTCGGTGGGACGATTCCCGAGGAT 
CGCCAGAAGCAACTGCTGAAACTGACCGCCGAACACAACATCGGGGTGGTCGAGGACGACATCTACGGCGAA 
CTGATGTTCGACCAGGGCCAGGCGCGCTCGCTCAAGTCCCACGACCGCGACGGCCGGGTGATCTACTGCTCG 
AGTTTCTCCAAGACCATCTCGCCCGGCGTACGCATCGGCTGGATCATCGCCGAGCGCTACCAGGAGGAGATC 
CGTCGCCTGCAGACCTTCACCACCCATTCGGCCTGCACCGTGACCCAGATGGGCGTCGCCGCCTACTTGGAG 
AACGGCGGCTACGACCGCCACCTGCGCTACATCCGCCAGGAGTACCGGAAGAACATGACCGCCTACCAGTTG 
GCGGTGCAGCAGTACTTCCCGGAGGGGACGCAGATGACCCGGCCCAAGGGCGGCTTCATCCTCTGGGTCAGC 
CTGCCGGCCAAGGTCAACACCAAGGAACTCCACGTGCGGGCCCTGGAGCAGGGCATCAGCATCGCCCCGGGG 
CTGATCTTCAGCAACACCGAGCAGTTCAACAACTGCCTGCGGCTGACCTGCGGGATTCCCTGGAACCGCGAG 
GCGGAGCGGGCGATCATGACCCTCGGCATGCTTGCCGGGCAGCTTTGCCAGGAAGGCCTTATCGCCGCCTGA