ViewGene

Locus Name:
GeneID:
Location:

GeneID:884
TrivialName: PA14_03040
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03040
PAO1 Ortholog Locus:PA0246
Sequence Length:1506
Protein Length:501
Start: 269201
Stop: 267696
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03635.1|AE004462_8 (AE004462) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 498/501 (99%), Positives = 500/501 (99%)
Sequence:
TTGTCCGATCTCGCCCAGAACCCGCCCGCCGTCCGTACCGTCCTCGCCGGCCTGATGCTGTCGATCTTCCTC
AGCGCCCTCGACCAGACCATCGTCGCCGTCTCCCTGCCGGCGATCTCGGCCGACTTCGCCGACCTCGACCTG
CTGGCCTGGGTGATCTCGGCCTACATGGTGGCGATGACCGTATCGATGCCGATCTACGGCAAGCTCGGCGAC
CTCTACGGCCGCCGCCGTCTGATGCTCTTCGCCATCGTCGTGTTCACCGCCGCCTCGCTGCTTTGCGGGCTC
GCGCAGAGCATGGGCCAACTGGTGCTGGCGCGAGTGCTGCAAGGGGTCGGCGCGGGCGGGCTGATGGCGGTG
AGCCAGGCGATCATCGGCGACATCGTCCCGCCGCGCGAGCGCGGCCGCTACCAGGGCTACTTCAGCAGCATG
TACGCCATCGCCAGCGTCGCCGGCCCGGTGCTCGGCGGCCTGCTCACCGAGTACCTGTCGTGGCGCTGGGTG
TTCTGGATCAACCTGCCGATCGGCCTTCTCGCGCTGGCCATCTCGCGGCGGACCCTGGTCGGCCTGCCGGTG
CCGCGCCGGCAACCGGTGATCGACTACCTGGGCATCGTGCTGATGGTGGTGGGTCTCACCGCGCTGCTCCTG
GCCATCACCCAGATCGGCCAGGGCGCAGCCTGGAGCGACCCGGCGCTGCTCGGCCTGTTCGCCCTGGCGGCG
CTCGCCCTGCTGCTGTTCGTCGCCCAGGAGCGGCGCTTCCGCGAACCGCTGGTGCCGATGCAACTGTTCGCC
GTCCGCGCCGCCACCCTCAGTTGGCTGGTTGCGTTCTTCGCCAGCTTCCAGGCCATCTCGCTGACCGTGCTG
GTGCCGCTGCGCTACCAGAGCGTTACCGGCGCCGGCGCCGACAGCGCCGCGCTGCATTTGCTGCCGCTGGTC
ATGGGCCTGCCGCTGGGCGCGTACTGCTGCGGGCGGCTGACCGCCAGCCTGGGACGCTACAAGCCGCTGATC
CTGCTCGGCGCCGTCCTGTTGCCCTGCGGCATCGCCGGCCTGGCCCTGGTCCCGGTCGGCGACCACTGGCTG
TCCGGGCTGTGCATGCTGCTCACCGGGATCGCCATCGGTACCCAGTTCCCGACCAGCCTGGTGGCCGCGCAG
AACGCCGTGGAGCAACGCCACATCGGCGTCGCCACCAGCAACGCGACGCTGTTCCGCTCCCTCGGCGGGGCG
GTCGGGGTGGCGCTGATGTCAGCGATCCTGCTGGCCCTGCTCAAGCACCTGCGGATCGGCGGCGGGCTCGAC
CAGGGCTTTTCCGAGAGCGCCCTGCTGAGCAGCCTGGACGCCGCCAGCGGGCCGGCCCGGGTGATCCTCCAG
CATGTCCTCGCGGATGCCTTCAAGGTGCTCTTCCTGGTCAACGCGGCGGTGGCGCTGCTCGGCCTGGCGGTG
GCCTCGGCACTACCCGACATGACCCTGCGCGGCCGCGGCGCGACGCAACCGACGGCAGGCGAGTGA
Translation:
MSDLAQNPPAVRTVLAGLMLSIFLSALDQTIVAVSLPAISADFADLDLLAWVISAYMVAMTVSMPIYGKLGD
LYGRRRLMLFAIVVFTAASLLCGLAQSMGQLVLARVLQGVGAGGLMAVSQAIIGDIVPPRERGRYQGYFSSM
YAIASVAGPVLGGLLTEYLSWRWVFWINLPIGLLALAISRRTLVGLPVPRRQPVIDYLGIVLMVVGLTALLL
AITQIGQGAAWSDPALLGLFALAALALLLFVAQERRFREPLVPMQLFAVRAATLSWLVAFFASFQAISLTVL
VPLRYQSVTGAGADSAALHLLPLVMGLPLGAYCCGRLTASLGRYKPLILLGAVLLPCGIAGLALVPVGDHWL
SGLCMLLTGIAIGTQFPTSLVAAQNAVEQRHIGVATSNATLFRSLGGAVGVALMSAILLALLKHLRIGGGLD
QGFSESALLSSLDAASGPARVILQHVLADAFKVLFLVNAAVALLGLAVASALPDMTLRGRGATQPTAGE*
AnnotationID:893GeneID:884
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 19:07:34
Gene Name:
Confidence Code:3
GeneProduct:putative MFS transporter
Cell Localization:()
Synonyms:PA0246
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO57751.1| (AE016871) drug resistance transporter, EmrB/QacA family
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 504

 Score =  624 bits (1609), Expect = e-178
 Identities = 325/497 (65%), Positives = 394/497 (79%), Gaps = 5/497 (1%)

>emb|CAD18407.1| (AL646083) PROBABLE INTEGRAL MEMBRANE TRANSMEMBRANE PROTEIN
           [Ralstonia solanacearum]
          Length = 520

 Score =  443 bits (1139), Expect = e-123
 Identities = 240/500 (48%), Positives = 326/500 (65%), Gaps = 14/500 (2%)

Structural Features:
Genomic Context:
Comment:
ReferenceID:14249
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18913
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33609
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:884_cdd.html
URL:
Homologs By Global Alignment
Gene ID:884

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1576 PA0246_tr translation of PA0246 501 99.40 99.80 0 2459.0
57005 gb|AAG03635.1|AE004462_8 (AE004462) probable MFS transporter [Pseudomonas aeruginosa PAO1] 501 99.20 99.80 0 2457.0
57006 gb|AAO57751.1| (AE016871) drug resistance transporter, EmrB/QacA family [Pseudomonas syringae pv. tomato str. DC3000] 514 63.42 76.65 23 1616.0
57007 gb|AAN67011.1|AE016329_6 (AE016779) drug resistance transporter, EmrB/QacA family [Pseudomonas putida KT2440] 502 63.14 73.90 20 1527.0
57008 emb|CAD18407.1| (AL646083) PROBABLE INTEGRAL MEMBRANE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum] 528 45.83 62.12 35 1143.0
GC ORFID: 43886How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0246Glimmer Score:
Start: 6070542Stop: 6069037
Length: 1506
Start Codon: TTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0246 translation of PA0246Homolog Bit Score 951.0
Other Homologs: t_PA0246 (ORF: GLIMMER)
GC ORF Sequence
TTGTCCGATCTCGCCCAGAACCCGCCCGCCGTCCGTACCGTCCTCGCCGGCCTGATGCTGTCGATCTTCCTC
AGCGCCCTCGACCAGACCATCGTCGCCGTCTCCCTGCCGGCGATCTCGGCCGACTTCGCCGACCTCGACCTG
CTGGCCTGGGTGATCTCGGCCTACATGGTGGCGATGACCGTATCGATGCCGATCTACGGCAAGCTCGGCGAC
CTCTACGGCCGCCGCCGTCTGATGCTCTTCGCCATCGTCGTGTTCACCGCCGCCTCGCTGCTTTGCGGGCTC
GCGCAGAGCATGGGCCAACTGGTGCTGGCGCGAGTGCTGCAAGGGGTCGGCGCGGGCGGGCTGATGGCGGTG
AGCCAGGCGATCATCGGCGACATCGTCCCGCCGCGCGAGCGCGGCCGCTACCAGGGCTACTTCAGCAGCATG
TACGCCATCGCCAGCGTCGCCGGCCCGGTGCTCGGCGGCCTGCTCACCGAGTACCTGTCGTGGCGCTGGGTG
TTCTGGATCAACCTGCCGATCGGCCTTCTCGCGCTGGCCATCTCGCGGCGGACCCTGGTCGGCCTGCCGGTG
CCGCGCCGGCAACCGGTGATCGACTACCTGGGCATCGTGCTGATGGTGGTGGGTCTCACCGCGCTGCTCCTG
GCCATCACCCAGATCGGCCAGGGCGCAGCCTGGAGCGACCCGGCGCTGCTCGGCCTGTTCGCCCTGGCGGCG
CTCGCCCTGCTGCTGTTCGTCGCCCAGGAGCGGCGCTTCCGCGAACCGCTGGTGCCGATGCAACTGTTCGCC
GTCCGCGCCGCCACCCTCAGTTGGCTGGTTGCGTTCTTCGCCAGCTTCCAGGCCATCTCGCTGACCGTGCTG
GTGCCGCTGCGCTACCAGAGCGTTACCGGCGCCGGCGCCGACAGCGCCGCGCTGCATTTGCTGCCGCTGGTC
ATGGGCCTGCCGCTGGGCGCGTACTGCTGCGGGCGGCTGACCGCCAGCCTGGGACGCTACAAGCCGCTGATC
CTGCTCGGCGCCGTCCTGTTGCCCTGCGGCATCGCCGGCCTGGCCCTGGTCCCGGTCGGCGACCACTGGCTG
TCCGGGCTGTGCATGCTGCTCACCGGGATCGCCATCGGTACCCAGTTCCCGACCAGCCTGGTGGCCGCGCAG
AACGCCGTGGAGCAACGCCACATCGGCGTCGCCACCAGCAACGCGACGCTGTTCCGCTCCCTCGGCGGGGCG
GTCGGGGTGGCGCTGATGTCAGCGATCCTGCTGGCCCTGCTCAAGCACCTGCGGATCGGCGGCGGGCTCGAC
CAGGGCTTTTCCGAGAGCGCCCTGCTGAGCAGCCTGGACGCCGCCAGCGGGCCGGCCCGGGTGATCCTCCAG
CATGTCCTCGCGGATGCCTTCAAGGTGCTCTTCCTGGTCAACGCGGCGGTGGCGCTGCTCGGCCTGGCGGTG
GCCTCGGCACTACCCGACATGACCCTGCGCGGCCGCGGCGCGACGCAACCGACGGCAGGCGAGTGA