ViewGene

Locus Name:
GeneID:
Location:

GeneID:883
TrivialName: PA14_66690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66690
PAO1 Ortholog Locus:PA5047
Sequence Length:1440
Protein Length:479
Start: 5957665
Stop: 5956226
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08432.1|AE004918_2 (AE004918) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 479/479 (100%), Positives = 479/479 (100%)
Sequence:
ATGAAGACCGCCTGGCTCCTGCTGCTGTTGCTGGGAGTCGGCGCTCTGGGCGGCTGCGCGGTGAACCCGGCC
ACCGGCAAGAGCGATTTCGTGATGATGAGCGAGCAGCAGGAACTCGGCATGGGCGCTCGCTACAACCAGGAA
ATCCTCAAGCAGTTCCCCCGCTACAACGATGAAAAGCTCCAGGCCTACGTGCAACGGGTAGGCGAGCGGGTC
GCCCGCAGCAGCCACCGCAGCAACCTGCAATATCATTTCACCGTCATCGATTCGCCGGACATCAACGCCTTC
GCCCTGCCGGGCGGCTACATCTATATCCATCGCGGACTGATCGCCTACCTTGGCTCCGAGGCCGAACTGGCC
GCGGTGCTCGGTCATGAGGTCGGCCATGTCACGGCGCGCCACAGCGTGCGCCAGCAGAGTCAGGCCAGCGCC
TGGAACATCCTTGGCCAGGCGGTGGCGATCGGCACCGGGGTCGGCGCCGCCGGCGACCTGGCCAACGTGCTC
GGCACGGCCTTCGTCCGCGGCTACGGGCGTGACATGGAACTGGAGGCCGATGGTCTCGGCGCCCAGTACCTG
GCCCGCGCCGGCTACGATCCGACGGCGATGATCCAGGTGGTGCGGGTGCTGAAGAACCAGGAGGACTTCGCT
CGCGAAGAGGCCGCGCGTAATGGCCAGGCGGTACAGGCCGGCGGCTACCACGGGTTGTTCGATACCCATCCG
GACAACGACCGGCGCCTGCAGGAAGTGGTCGGCCCGGCCCGGCAGCTGGCCAACGGACAGCAGGAAGTGGGG
CGCGAGGTCTTTCTTCGCCATCTGGAAGGCATGCCGTTCGGCGACTCGGCATCGGCCGGGGTGCGTCGCGGG
CAGAACTTCTACCATGCCGAGCTGGACTTCACCCTGAGCTATCCGGCGGGCTGGAAGATCCTCAACCAGCCC
AGCGCCCTGCTTGGCTATCCGGCGGACGAGCAGTCGTTCATCGGCATGAAGCTGGTGCCCCATGATTCCCGC
CTGACGCCCGCGGAGTTCCTGCGCAAGAACGCCGGGCAACGGCTGGCCCAGGAAGAGTCGCTGAAGCAGGCC
GGGCTGAACGGCTACACGGCGGTGGTGCCAGGCAACCCGGCGCGACGGGTTGCTGTGATCTACCAGGGCGAC
CGCGCCTACCTGTTCGTCGGCGTGGTCAAGGTCGGTTCCCTGGAGACCCAGGACGACCGCTTCCTCAGCGTG
ATCCGCAGCTTCCGTCCGCTGCGCGACAAGGAGCGGGCCCTGGCGCAGCCGCGACGCCTGCATCTGGTGCAG
GTCAAGGCGGGGCAGACGCTGGAGCAATTGGCGGCTGGCGGCGAGGGGTCATTGAGTGACTCCGTGGCTCGT
CTGCGTCTGCTGAATGACCTTTATCCGAGCGGTGAACCCCGTCCGGGCGATTGGCTTAAAGTCGTACGCTAG
Translation:
MKTAWLLLLLLGVGALGGCAVNPATGKSDFVMMSEQQELGMGARYNQEILKQFPRYNDEKLQAYVQRVGERV
ARSSHRSNLQYHFTVIDSPDINAFALPGGYIYIHRGLIAYLGSEAELAAVLGHEVGHVTARHSVRQQSQASA
WNILGQAVAIGTGVGAAGDLANVLGTAFVRGYGRDMELEADGLGAQYLARAGYDPTAMIQVVRVLKNQEDFA
REEAARNGQAVQAGGYHGLFDTHPDNDRRLQEVVGPARQLANGQQEVGREVFLRHLEGMPFGDSASAGVRRG
QNFYHAELDFTLSYPAGWKILNQPSALLGYPADEQSFIGMKLVPHDSRLTPAEFLRKNAGQRLAQEESLKQA
GLNGYTAVVPGNPARRVAVIYQGDRAYLFVGVVKVGSLETQDDRFLSVIRSFRPLRDKERALAQPRRLHLVQ
VKAGQTLEQLAAGGEGSLSDSVARLRLLNDLYPSGEPRPGDWLKVVR*
AnnotationID:892GeneID:883
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 18:06:39
Gene Name:
Confidence Code:4
GeneProduct:putative protease
Cell Localization:()
Synonyms:PA5047
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4784,pfam01435
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG4784, COG4784, Putative Zn-dependent protease 
CD-Length = 479 residues,  99.8% aligned
Score =  623 bits (1609), Expect = 1e-179
Identities = 179/490 (36%), Positives = 246/490 (50%), Gaps = 23/490 (4%)

pfam01435, Peptidase_M48, Peptidase family M48.
CD-Length = 191 residues,  99.0% aligned
Score =  141 bits (356), Expect = 2e-34
Identities = 70/198 (35%), Positives = 100/198 (50%), Gaps = 25/198 (12%)
Genomic Context:
Comment:
ReferenceID:1769
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18911
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35005
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:883_cdd.html
URL:
Homologs By Global Alignment
Gene ID:883

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1575 PA5047_tr translation of PA5047 479 99.99 99.99 0 2459.0
57004 gb|AAG08432.1|AE004918_2 (AE004918) hypothetical protein PA5047 [Pseudomonas aeruginosa PAO1] 479 99.99 99.99 0 2459.0
GC ORFID: 43885How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5047Glimmer Score:
Start: 5221348Stop: 5219909
Length: 1440
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA5047 translation of PA5047Homolog Bit Score 951.0
Other Homologs: t_PA5047 (ORF: GLIMMER)
GC ORF Sequence
ATGAAGACCGCCTGGCTCCTGCTGCTGTTGCTGGGAGTCGGCGCTCTGGGCGGCTGCGCGGTGAACCCGGCC
ACCGGCAAGAGCGATTTCGTGATGATGAGCGAGCAGCAGGAACTCGGCATGGGCGCTCGCTACAACCAGGAA
ATCCTCAAGCAGTTCCCCCGCTACAACGATGAAAAGCTCCAGGCCTACGTGCAACGGGTAGGCGAGCGGGTC
GCCCGCAGCAGCCACCGCAGCAACCTGCAATATCATTTCACCGTCATCGATTCGCCGGACATCAACGCCTTC
GCCCTGCCGGGCGGCTACATCTATATCCATCGCGGACTGATCGCCTACCTTGGCTCCGAGGCCGAACTGGCC
GCGGTGCTCGGTCATGAGGTCGGCCATGTCACGGCGCGCCACAGCGTGCGCCAGCAGAGTCAGGCCAGCGCC
TGGAACATCCTTGGCCAGGCGGTGGCGATCGGCACCGGGGTCGGCGCCGCCGGCGACCTGGCCAACGTGCTC
GGCACGGCCTTCGTCCGCGGCTACGGGCGTGACATGGAACTGGAGGCCGATGGTCTCGGCGCCCAGTACCTG
GCCCGCGCCGGCTACGATCCGACGGCGATGATCCAGGTGGTGCGGGTGCTGAAGAACCAGGAGGACTTCGCT
CGCGAAGAGGCCGCGCGTAATGGCCAGGCGGTACAGGCCGGCGGCTACCACGGGTTGTTCGATACCCATCCG
GACAACGACCGGCGCCTGCAGGAAGTGGTCGGCCCGGCCCGGCAGCTGGCCAACGGACAGCAGGAAGTGGGG
CGCGAGGTCTTTCTTCGCCATCTGGAAGGCATGCCGTTCGGCGACTCGGCATCGGCCGGGGTGCGTCGCGGG
CAGAACTTCTACCATGCCGAGCTGGACTTCACCCTGAGCTATCCGGCGGGCTGGAAGATCCTCAACCAGCCC
AGCGCCCTGCTTGGCTATCCGGCGGACGAGCAGTCGTTCATCGGCATGAAGCTGGTGCCCCATGATTCCCGC
CTGACGCCCGCGGAGTTCCTGCGCAAGAACGCCGGGCAACGGCTGGCCCAGGAAGAGTCGCTGAAGCAGGCC
GGGCTGAACGGCTACACGGCGGTGGTGCCAGGCAACCCGGCGCGACGGGTTGCTGTGATCTACCAGGGCGAC
CGCGCCTACCTGTTCGTCGGCGTGGTCAAGGTCGGTTCCCTGGAGACCCAGGACGACCGCTTCCTCAGCGTG
ATCCGCAGCTTCCGTCCGCTGCGCGACAAGGAGCGGGCCCTGGCGCAGCCGCGACGCCTGCATCTGGTGCAG
GTCAAGGCGGGGCAGACGCTGGAGCAATTGGCGGCTGGCGGCGAGGGGTCATTGAGTGACTCCGTGGCTCGT
CTGCGTCTGCTGAATGACCTTTATCCGAGCGGTGAACCCCGTCCGGGCGATTGGCTTAAAGTCGTACGCTAG