ViewGene
Locus Name:
GeneID:
Location:

GeneID:882
TrivialName: PA14_19770
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19770
PAO1 Ortholog Locus:PA3424
Sequence Length:1407
Protein Length:468
Start: 1705499
Stop: 1704093
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06812.1|AE004763_7 (AE004763) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 466/468 (99%), Positives = 467/468 (99%)
Sequence:
ATGTCGGCCTGGCGCCACCTCAGCCTGTGGATGAATCAACTGGACGATCCGCTCGAAGCGCGCCCGTCCCTG
GAAGAATCCCTCGAGGTCGACGTGGCCATCGTCGGCGCCGGCTACACCGGCCTCTGGACCGCCTATTACCTG
AAGCGCCGGGCGCCGCAGTTGCGCGTCGCCATCGTCGAGGCGGAAACCGCCGGCTTCGGCGCCTCGGGGCGC
AACGGCGGCTGGCTGATGGGCAACCTGCTCGGCGAGGACGGCCTGCTCGCCGGCTTGCCGCCGGAACGGCGC
CGGGCCGGCTACGACCTGCTGCACGGGATTCCCGACGAGGTCGCGCGGGTGCTGCAAGAGGAAGGCATCGAC
TGCGACTACCGCAAGGGCGGCGTGCTCTACTGCGCGGCGCGCTACCCGGAACAGGAACGCCGCCTGCGCGCC
TATCTGCATGATCTCTATGCCGAAGGCCTGGACGAAAGCGACTACCGCTGGCTGACGCCGCAGGAACTCGAC
CAGCAGTTGCGCATCCCCGGCAGCTACGGGGCGATCCATTCGCCGCACTGCGCCACCATCCAGCCGGCCAGG
CTCGCGCGCGGCCTGGCCCGCGCGGTGGAGCGCCTGGGCGTGCGCCTGTTCGAGAAGAGCCGGGTGCTGCAC
TGGCAACGCGGCCTGCTGCGCACCGAGCGCGGCGAACTGCGCGCCGAATGGATCGTGCCGGCGGTGGAAGGC
TATGCCGCCAGCCTGCCGCCACTGGGCCACTACCAGTTGCCGGTGCAGAGTCTGCTGGTGGCCACCGAGCCG
CTGCCGTCGTCGGTCTGGGCGGAGATCGGCCTGGAGCGCGGCCAGGCCTTCAGCGAATTCAGCCGCCAGGTC
ACCTACGGCCAGCGCACCGCCGACGACCGCCTGGCCTTCGGCGCGCGGGGCGGCTACCGCTTCGGCGGCAAG
CTGCGCAACGACTTCAGCCTCGACGACGAGGAAGTCGGCCTGCGTCGCTACCTGTTCGGCGAACTCTTCCCG
CAGCTCAAGGACGCCAGGATCAGCCACACCTGGGGCGGCAACCTCGGCATGGCCCGGCGCTTCCGCCCGCAC
ATGCTGCTCGACCGCGCCAGTGGCATCGCCCTCTCCGGCGGCTACGGCGGCGAAGGGGTCGGCGCCAGCAAC
CTCGGCGGCCGCACCCTGGCCGCGCTGATCCTCGGCGAGGACAGCGAGCTGCTGCGGCAGCCCTGGGTGCTG
GGCGAGCGTCCACTGGACAGCCTGGCCCGCTGGGAACCGGAACCCTGCCGCTGGCTCGGCTACAACGCGATC
ATCCGCAGTTTCGTCCATGAGGACCGGGTCCTTGCCGATCCGCACAGCGCGCCCTGGCGCCGCAGCCTGGCG
CAAACCCTCGCGGCCGGCATGGAAAGCCTGATGCGCTGA
Translation:
MSAWRHLSLWMNQLDDPLEARPSLEESLEVDVAIVGAGYTGLWTAYYLKRRAPQLRVAIVEAETAGFGASGR
NGGWLMGNLLGEDGLLAGLPPERRRAGYDLLHGIPDEVARVLQEEGIDCDYRKGGVLYCAARYPEQERRLRA
YLHDLYAEGLDESDYRWLTPQELDQQLRIPGSYGAIHSPHCATIQPARLARGLARAVERLGVRLFEKSRVLH
WQRGLLRTERGELRAEWIVPAVEGYAASLPPLGHYQLPVQSLLVATEPLPSSVWAEIGLERGQAFSEFSRQV
TYGQRTADDRLAFGARGGYRFGGKLRNDFSLDDEEVGLRRYLFGELFPQLKDARISHTWGGNLGMARRFRPH
MLLDRASGIALSGGYGGEGVGASNLGGRTLAALILGEDSELLRQPWVLGERPLDSLARWEPEPCRWLGYNAI
IRSFVHEDRVLADPHSAPWRRSLAQTLAAGMESLMR*
AnnotationID:891GeneID:882
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 17:05:16
Gene Name:
Confidence Code:3
GeneProduct:putative Glycine/D-amino acid oxidases
Cell Localization:()
Synonyms:PA3424
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0665
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) 
[Amino acid transport and metabolism]
CD-Length = 387 residues,  99.7% aligned
Score =  148 bits (373), Expect = 2e-36
Identities = 102/403 (25%), Positives = 148/403 (36%), Gaps = 29/403 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1767




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18909




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32142




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:882_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:882
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1574
                           PA3424_tr
                           translation of PA3424
                           468
                           99.57
                           99.78
                           0
                           2459.0
     

     
     
57001
                           gb|AAG06812.1|AE004763_7
                           (AE004763) hypothetical protein PA3424 [Pseudomonas aeruginosa PAO1]
                           468
                           99.57
                           99.78
                           0
                           2459.0
     

     
     
57002
                           gb|AAN66500.1|AE016279_3
                           (AE016777) conserved hypothetical protein [Pseudomonas putida KT2440]
                           476
                           71.84
                           82.14
                           8
                           1846.0
     

     
     
57003
                           gb|AAN56663.1|AE015802_9
                           (AE015802) conserved hypothetical protein [Shewanella oneidensis MR-1]
                           497
                           45.67
                           58.35
                           37
                           1086.0
     

     






      

          
GC ORFID: 43884How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3424Glimmer Score: 

          
Start: 3248433Stop: 3249839

          
Length: 1407


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3424 translation of PA3424Homolog Bit Score 951.0

          
Other Homologs:  t_PA3424 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGGCCTGGCGCCACCTCAGCCTGTGGATGAATCAACTGGACGATCCGCTCGAAGCGCGCCCGTCCCTG 
GAAGAATCCCTCGAGGTCGACGTGGCCATCGTCGGCGCCGGCTACACCGGCCTCTGGACCGCCTATTACCTG 
AAGCGCCGGGCGCCGCAGTTGCGCGTCGCCATCGTCGAGGCGGAAACCGCCGGCTTCGGCGCCTCGGGGCGC 
AACGGCGGCTGGCTGATGGGCAACCTGCTCGGCGAGGACGGCCTGCTCGCCGGCTTGCCGCCGGAACGGCGC 
CGGGCCGGCTACGACCTGCTGCACGGGATTCCCGACGAGGTCGCGCGGGTGCTGCAAGAGGAAGGCATCGAC 
TGCGACTACCGCAAGGGCGGCGTGCTCTACTGCGCGGCGCGCTACCCGGAACAGGAACGCCGCCTGCGCGCC 
TATCTGCATGATCTCTATGCCGAAGGCCTGGACGAAAGCGACTACCGCTGGCTGACGCCGCAGGAACTCGAC 
CAGCAGTTGCGCATCCCCGGCAGCTACGGGGCGATCCATTCGCCGCACTGCGCCACCATCCAGCCGGCCAGG 
CTCGCGCGCGGCCTGGCCCGCGCGGTGGAGCGCCTGGGCGTGCGCCTGTTCGAGAAGAGCCGGGTGCTGCAC 
TGGCAACGCGGCCTGCTGCGCACCGAGCGCGGCGAACTGCGCGCCGAATGGATCGTGCCGGCGGTGGAAGGC 
TATGCCGCCAGCCTGCCGCCACTGGGCCACTACCAGTTGCCGGTGCAGAGTCTGCTGGTGGCCACCGAGCCG 
CTGCCGTCGTCGGTCTGGGCGGAGATCGGCCTGGAGCGCGGCCAGGCCTTCAGCGAATTCAGCCGCCAGGTC 
ACCTACGGCCAGCGCACCGCCGACGACCGCCTGGCCTTCGGCGCGCGGGGCGGCTACCGCTTCGGCGGCAAG 
CTGCGCAACGACTTCAGCCTCGACGACGAGGAAGTCGGCCTGCGTCGCTACCTGTTCGGCGAACTCTTCCCG 
CAGCTCAAGGACGCCAGGATCAGCCACACCTGGGGCGGCAACCTCGGCATGGCCCGGCGCTTCCGCCCGCAC 
ATGCTGCTCGACCGCGCCAGTGGCATCGCCCTCTCCGGCGGCTACGGCGGCGAAGGGGTCGGCGCCAGCAAC 
CTCGGCGGCCGCACCCTGGCCGCGCTGATCCTCGGCGAGGACAGCGAGCTGCTGCGGCAGCCCTGGGTGCTG 
GGCGAGCGTCCACTGGACAGCCTGGCCCGCTGGGAACCGGAACCCTGCCGCTGGCTCGGCTACAACGCGATC 
ATCCGCAGTTTCGTCCATGAGGACCGGGTCCTTGCCGATCCGCACAGCGCGCCCTGGCGCCGCAGCCTGGCG 
CAAACCCTCGCGGCCGGCATGGAAAGCCTGATGCGCTGA