ViewGene
Locus Name:
GeneID:
Location:

GeneID:881
TrivialName: PA14_47640
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47640
PAO1 Ortholog Locus:PA1282
Sequence Length:1506
Protein Length:501
Start: 4240527
Stop: 4242032
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04671.1|AE004557_12 (AE004557) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 498/501 (99%), Positives = 500/501 (99%)
Sequence:
ATGTTCCGGCAGAACCGCTGGCTGGTCCTGGCCATCGTCTCCAGCGCCCTGTTCCTCATCATCATCGACATG
ACCGTGCTCTACACGGCCCTGCCGCGCCTGACCCACGACCTCGGTGCGACGGCCGCGGAGAAGCTCTGGATC
GTCAACGCCTATCCGCTGGTGGTCGCCGGCCTGCTGCCCGGCGCCGGCTTGCTCAGCGACCGCCTTGGCCAC
AAGCGGCTGTTCCTCGCCGGCCTGCCGCTGTTCGGCCTGGCCTCGCTGTGCGCCGCCTTCGCCCCCAGCGCC
GCGGCGCTGATCGCCGCCCGCGCCGGGTTGGCGGTGGGCGCGGCACTGATGATGCCGGCGACCCTGTCGATC
GTCCGCCATGTCTTCCAGGACGAACGCGAACGCGCCCTGGCCATCGGCATCTGGGCCTCCGTCGCCTCTGCC
GGCGCGGCGCTGGGGCCGGTGGTCGGCGGCGTGCTGCTGGAGTTCTTCTGGTGGGGCTCGGTGTTCCTCATC
AACGTCCCGGTGGTGGTCGTCGCTTTGTTGCTGGCGCTGCCGGCCATCCCGGCCTGCGGCGGCCAGTCGCGG
CGCCCATGGGACGCCCTCGGCTCGCTGCAGGTGATGTTCGGCCTGGTCGGGGTGGTGTATGCGATCAAGGAA
CTCAGCACACGCGCCCCGGACTTCGGGCTGGCCGTCCTGGCCGCGCTCGGCGGCATGCTCTGCCTGTACCTG
TTCGTCCGCCGCCAGCGCCGCGCCCGCGAACCGATGATCGACTTCGCGCTGTTCCGCAACCGGCGCTTCGCC
CGCGGCGTCGCGGTGGCCCTGGTGGCGACCATGGCGCTGGTCGGCATGGAACTGGTGTTCAGCCAGCACCTG
CAACTGGTGCAGGGCCTGACGCCGCTGAAGGCCGGCCTGTTCGTCCTGCCGATCCCGCTGGCCTCGCTGGTG
GTCGGGCCGCTGGCCGGCTGGCTGGTGCCGCGCTGGGGCGAGAACCGGGTGATGTGCGCCTCCCTGCTGCTC
GGCAGCGCCGGATTGCTCGGCCTGGCCCTGTCCTACCAGTCCGCCACCGGAGCGCAACTGGCCAGCCTGGTG
CTGCTCGGCGTCGGCTTCGGCGGCGCGATGACCGCCGCCTCCACCGCGGTGATGCTCAACGTGGACGAACAG
AGTTCCGGAATGGCGGCCGCCATCGAAGACGTGTCCTACGAACTGGGCGGGGTGATCGGCGTGACCCTGCTC
GGCAGCCTGATGAGTTTCGTCTACGGGATGTCGCTGAGGCTGCCCTCGGCCGAGCTGCCGGCGCGGGTCCGC
GACAGCCTCGACGACGCCCTGTTGGTCGCCGAGGGCCTGGCGCCGGAGGTCGCGTCGCGGCTCGTCGAGCTT
GCCCGGCAGGCTTTCGACCAGGCCTTCGTCGCCGTGCTGCTGGCCGCCGCCGCGCTGCTCTTCCTCAGCGCC
ATGGCGGTCCTGCGCCAGCCGCGTCCGGCTACAGAGCCAGCGCCACCAGCACCGCACACTCGGTAA
Translation:
MFRQNRWLVLAIVSSALFLIIIDMTVLYTALPRLTHDLGATAAEKLWIVNAYPLVVAGLLPGAGLLSDRLGH
KRLFLAGLPLFGLASLCAAFAPSAAALIAARAGLAVGAALMMPATLSIVRHVFQDERERALAIGIWASVASA
GAALGPVVGGVLLEFFWWGSVFLINVPVVVVALLLALPAIPACGGQSRRPWDALGSLQVMFGLVGVVYAIKE
LSTRAPDFGLAVLAALGGMLCLYLFVRRQRRAREPMIDFALFRNRRFARGVAVALVATMALVGMELVFSQHL
QLVQGLTPLKAGLFVLPIPLASLVVGPLAGWLVPRWGENRVMCASLLLGSAGLLGLALSYQSATGAQLASLV
LLGVGFGGAMTAASTAVMLNVDEQSSGMAAAIEDVSYELGGVIGVTLLGSLMSFVYGMSLRLPSAELPARVR
DSLDDALLVAEGLAPEVASRLVELARQAFDQAFVAVLLAAAALLFLSAMAVLRQPRPATEPAPPAPHTR*
AnnotationID:890GeneID:881
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 18:06:29
Gene Name:
Confidence Code:3
GeneProduct:putative major facilitator superfamily (MFS) transporter
Cell Localization:()
Synonyms:PA1282
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE33881.1| (BX640447) putative inner membrane efflux protein [Bordetella
           bronchiseptica]
          Length = 499

 Score =  538 bits (1385), Expect = e-152
 Identities = 286/486 (58%), Positives = 354/486 (72%), Gaps = 3/486 (0%)

>emb|CAE37020.1| (BX640428) putative inner membrane efflux protein [Bordetella
           parapertussis]
          Length = 499

 Score =  536 bits (1381), Expect = e-151
 Identities = 285/486 (58%), Positives = 353/486 (72%), Gaps = 3/486 (0%)

>dbj|BAC00005.1| (AP005282) Permeases of the major facilitator superfamily
           [Corynebacterium glutamicum ATCC 13032]
          Length = 494

 Score =  374 bits (959), Expect = e-102
 Identities = 211/485 (43%), Positives = 291/485 (60%), Gaps = 26/485 (5%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:1765




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18907




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37502




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:881_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:881
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1573
                           PA1282_tr
                           translation of PA1282
                           501
                           99.40
                           99.80
                           0
                           2459.0
     

     
     
56985
                           gb|AAG04671.1|AE004557_12
                           (AE004557) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           501
                           99.40
                           99.80
                           0
                           2459.0
     

     
     
56986
                           emb|CAE33881.1|
                           (BX640447) putative inner membrane efflux protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           507
                           56.80
                           70.41
                           14
                           1381.0
     

     
     
56987
                           emb|CAE42593.1|
                           (BX640418) putative inner membrane efflux protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           507
                           56.80
                           70.41
                           14
                           1379.0
     

     
     
56988
                           emb|CAE37020.1|
                           (BX640428) putative inner membrane efflux protein [Bordetella parapertussis]
                           507
                           56.60
                           70.21
                           14
                           1377.0
     

     






      

          
GC ORFID: 43883How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1282Glimmer Score: 

          
Start: 713382Stop: 711877

          
Length: 1506


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1282 translation of PA1282Homolog Bit Score 951.0

          
Other Homologs:  t_PA1282 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCCGGCAGAACCGCTGGCTGGTCCTGGCCATCGTCTCCAGCGCCCTGTTCCTCATCATCATCGACATG 
ACCGTGCTCTACACGGCCCTGCCGCGCCTGACCCACGACCTCGGTGCGACGGCCGCGGAGAAGCTCTGGATC 
GTCAACGCCTATCCGCTGGTGGTCGCCGGCCTGCTGCCCGGCGCCGGCTTGCTCAGCGACCGCCTTGGCCAC 
AAGCGGCTGTTCCTCGCCGGCCTGCCGCTGTTCGGCCTGGCCTCGCTGTGCGCCGCCTTCGCCCCCAGCGCC 
GCGGCGCTGATCGCCGCCCGCGCCGGGTTGGCGGTGGGCGCGGCACTGATGATGCCGGCGACCCTGTCGATC 
GTCCGCCATGTCTTCCAGGACGAACGCGAACGCGCCCTGGCCATCGGCATCTGGGCCTCCGTCGCCTCTGCC 
GGCGCGGCGCTGGGGCCGGTGGTCGGCGGCGTGCTGCTGGAGTTCTTCTGGTGGGGCTCGGTGTTCCTCATC 
AACGTCCCGGTGGTGGTCGTCGCTTTGTTGCTGGCGCTGCCGGCCATCCCGGCCTGCGGCGGCCAGTCGCGG 
CGCCCATGGGACGCCCTCGGCTCGCTGCAGGTGATGTTCGGCCTGGTCGGGGTGGTGTATGCGATCAAGGAA 
CTCAGCACACGCGCCCCGGACTTCGGGCTGGCCGTCCTGGCCGCGCTCGGCGGCATGCTCTGCCTGTACCTG 
TTCGTCCGCCGCCAGCGCCGCGCCCGCGAACCGATGATCGACTTCGCGCTGTTCCGCAACCGGCGCTTCGCC 
CGCGGCGTCGCGGTGGCCCTGGTGGCGACCATGGCGCTGGTCGGCATGGAACTGGTGTTCAGCCAGCACCTG 
CAACTGGTGCAGGGCCTGACGCCGCTGAAGGCCGGCCTGTTCGTCCTGCCGATCCCGCTGGCCTCGCTGGTG 
GTCGGGCCGCTGGCCGGCTGGCTGGTGCCGCGCTGGGGCGAGAACCGGGTGATGTGCGCCTCCCTGCTGCTC 
GGCAGCGCCGGATTGCTCGGCCTGGCCCTGTCCTACCAGTCCGCCACCGGAGCGCAACTGGCCAGCCTGGTG 
CTGCTCGGCGTCGGCTTCGGCGGCGCGATGACCGCCGCCTCCACCGCGGTGATGCTCAACGTGGACGAACAG 
AGTTCCGGAATGGCGGCCGCCATCGAAGACGTGTCCTACGAACTGGGCGGGGTGATCGGCGTGACCCTGCTC 
GGCAGCCTGATGAGTTTCGTCTACGGGATGTCGCTGAGGCTGCCCTCGGCCGAGCTGCCGGCGCGGGTCCGC 
GACAGCCTCGACGACGCCCTGTTGGTCGCCGAGGGCCTGGCGCCGGAGGTCGCGTCGCGGCTCGTCGAGCTT 
GCCCGGCAGGCTTTCGACCAGGCCTTCGTCGCCGTGCTGCTGGCCGCCGCCGCGCTGCTCTTCCTCAGCGCC 
ATGGCGGTCCTGCGCCAGCCGCGTCCGGCTACAGAGCCAGCGCCACCAGCACCGCACACTCGGTAA