ViewGene

Locus Name:
GeneID:
Location:

GeneID: 880

TrivialName: PA14_35050

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_35050

PAO1 Ortholog Locus: PA2283

Sequence Length: 1458

Protein Length: 485

Start: 3121891

Stop: 3120434

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05671.1|AE004654_2 (AE004654) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 476/485 (98%), Positives = 479/485 (98%)

Sequence:

ATGAGCCACGATACGCTGCGGGTAAGGCTGCTCGCGTTCCTCTTCCTGATTCCCCTGGCGCTCTACGCCTGG
TCCGCCGTGCAGGCCTTCCGGGTCGACTCGACCCTGCGCGACGAACAGTTCATGCGCGACTGGAGCGCCTCG
GCGCGCAACGACCCGGACGCCGCCGACGCCATTCCCCGTCACCTGTTCCGTCCGGCCTATGGCGTCGAAGGT
CATCTTCACCAGTTCGCCGAAGACGCCGAGGCCATCCGCCGCGACCATCCTTGGCTGGCTCTGCGCGGCTGG
CTGGCCGCTATCGGCAAGCTCTGCGCGCTGGCGTCGGCGCTGGTCGCGGCCGCCTTGCTGGCGAGACTGGAA
TACGACGGGCGCCGCTCGATGCGCTCGCAAGCCTACCTGCTCGGCCACCTCGCGCCGGCCTGGCGGCGCCTC
GGTCGACTGGTCCCGTTGCACGCCGGCCTGCTGGTCGCCGCCCTGGCCAGCCAGTTGCTCTACGAAGCGCTG
TGGAGCTACAGCCACTGGCACAGTCACGGTTTCGTCGCCCTGCTCTTCTCACTGCCGCTGTGGCTGCTGTTC
CTCGGCGGCCTGCTCATGCTGCGGCGCCTGCGCCGCGAACTGCTGCCGCTGGAGGAACCGGTGCTCCACCTG
CTCGGCCGCGAACTCGACCGCGTCGCCGCGCCCGGCCTCTGGCAATGGCTGGGACAGATCGCCGACCGCGCC
GGAGCGCCGCTACCGGACCATGTCGTCACCGGCATCGAGCACTGCTACTTCGTCACCCAGGCCAAGGTCCTG
CTGGCGCCCCGCGGCATTCCGCTGGAGGGGCGTACCCTGTACATCCCGCTGACCTACGCCACGGTCATGAGC
GAGGCCGAAAGCGCCGCGATCATCGGCCACGAACTGGGCCACTTCGCCGCCGGCGACACCGCCCACGGCGCC
TCCCTGTCGCTCCTGCAGCGGCAGGTGCGCCTGCGCATCGAACGCATCGCCGCACCCGAGGATGGGCGTGTC
GGCCTGCTCGGCAAGCCGGGCCTGTGGGCCGCGCTGTACTTCCTCGAACGCTTCGAGCGCGCCTACCTGCAC
TGGAATCGCCACCAGGAACTGGCCGCCGACAAGGTCGGGGCGCGGGTAGCCGGCGCGCGGGTCTTCGCCATC
GCGCTGCTACGCACCTGCGCCCTGGCAGGACTGATCGAACGCCTGCTGGCCAGCCCGCAGACGCGCAACCTG
GTGCATGCGCTGACCGACCATCTGCGCGGGAACTCCCTGGAACTGGACGAACAGGACAGCGCGCGCCGCCTG
GAACACCCCTTCGACAGCCACCCGCCGACCTACCAGCGGATCGCGGACCTTTCCCTGGCGCTCGACGACGAC
CTGCTGCGACAGGCAAGGCGCATCGTCAGCGCCGACGACACGCAGTGGCTCAACCGCCTGCTCGATGCAGGC
CACGGGGAAAGCCGATGA

Translation:

MSHDTLRVRLLAFLFLIPLALYAWSAVQAFRVDSTLRDEQFMRDWSASARNDPDAADAIPRHLFRPAYGVEG
HLHQFAEDAEAIRRDHPWLALRGWLAAIGKLCALASALVAAALLARLEYDGRRSMRSQAYLLGHLAPAWRRL
GRLVPLHAGLLVAALASQLLYEALWSYSHWHSHGFVALLFSLPLWLLFLGGLLMLRRLRRELLPLEEPVLHL
LGRELDRVAAPGLWQWLGQIADRAGAPLPDHVVTGIEHCYFVTQAKVLLAPRGIPLEGRTLYIPLTYATVMS
EAESAAIIGHELGHFAAGDTAHGASLSLLQRQVRLRIERIAAPEDGRVGLLGKPGLWAALYFLERFERAYLH
WNRHQELAADKVGARVAGARVFAIALLRTCALAGLIERLLASPQTRNLVHALTDHLRGNSLELDEQDSARRL
EHPFDSHPPTYQRIADLSLALDDDLLRQARRIVSADDTQWLNRLLDAGHGESR*

AnnotationID:889 GeneID:880

AnnotatorUID: diggins

Modification Date/Time: 2005-03-04 11:11:06

Gene Name:

Confidence Code: 3

GeneProduct: putative protease

Cell Localization: ()

Synonyms: PA2283

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (20) Putative enzymes

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG0501

Secondary Functional Category(ies): posttranslational modification, protein turnover, chaperones

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

COG0501, HtpX, Zn-dependent protease with chaperone function 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 302 residues,  93.7% aligned
Score = 68.8 bits (167), Expect = 1e-12
Identities = 63/327 (19%), Positives = 102/327 (31%), Gaps = 44/327 (13%)

Genomic Context:

Comment:

ReferenceID:1763

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:18905

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:32500

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 880_cdd.html

URL:

Homologs By Global Alignment

Gene ID:880

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

1572 PA2283_tr translation of PA2283 485 98.14 98.76 0 2460.0

56984 gb|AAG05671.1|AE004654_2 (AE004654) hypothetical protein PA2283 [Pseudomonas aeruginosa PAO1] 485 98.14 98.76 0 2460.0

GC ORFID: `43882`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA2283`	Glimmer Score:
Start: `1832025`	Stop: `1833482`
Length: `1458`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA2283 translation of PA2283`	Homolog Bit Score `952.0`
Other Homologs: `t_PA2283 (ORF: GLIMMER)`
GC ORF Sequence
ATGAGCCACGATACGCTGCGGGTAAGGCTGCTCGCGTTCCTCTTCCTGATTCCCCTGGCGCTCTACGCCTGG TCCGCCGTGCAGGCCTTCCGGGTCGACTCGACCCTGCGCGACGAACAGTTCATGCGCGACTGGAGCGCCTCG GCGCGCAACGACCCGGACGCCGCCGACGCCATTCCCCGTCACCTGTTCCGTCCGGCCTATGGCGTCGAAGGT CATCTTCACCAGTTCGCCGAAGACGCCGAGGCCATCCGCCGCGACCATCCTTGGCTGGCTCTGCGCGGCTGG CTGGCCGCTATCGGCAAGCTCTGCGCGCTGGCGTCGGCGCTGGTCGCGGCCGCCTTGCTGGCGAGACTGGAA TACGACGGGCGCCGCTCGATGCGCTCGCAAGCCTACCTGCTCGGCCACCTCGCGCCGGCCTGGCGGCGCCTC GGTCGACTGGTCCCGTTGCACGCCGGCCTGCTGGTCGCCGCCCTGGCCAGCCAGTTGCTCTACGAAGCGCTG TGGAGCTACAGCCACTGGCACAGTCACGGTTTCGTCGCCCTGCTCTTCTCACTGCCGCTGTGGCTGCTGTTC CTCGGCGGCCTGCTCATGCTGCGGCGCCTGCGCCGCGAACTGCTGCCGCTGGAGGAACCGGTGCTCCACCTG CTCGGCCGCGAACTCGACCGCGTCGCCGCGCCCGGCCTCTGGCAATGGCTGGGACAGATCGCCGACCGCGCC GGAGCGCCGCTACCGGACCATGTCGTCACCGGCATCGAGCACTGCTACTTCGTCACCCAGGCCAAGGTCCTG CTGGCGCCCCGCGGCATTCCGCTGGAGGGGCGTACCCTGTACATCCCGCTGACCTACGCCACGGTCATGAGC GAGGCCGAAAGCGCCGCGATCATCGGCCACGAACTGGGCCACTTCGCCGCCGGCGACACCGCCCACGGCGCC TCCCTGTCGCTCCTGCAGCGGCAGGTGCGCCTGCGCATCGAACGCATCGCCGCACCCGAGGATGGGCGTGTC GGCCTGCTCGGCAAGCCGGGCCTGTGGGCCGCGCTGTACTTCCTCGAACGCTTCGAGCGCGCCTACCTGCAC TGGAATCGCCACCAGGAACTGGCCGCCGACAAGGTCGGGGCGCGGGTAGCCGGCGCGCGGGTCTTCGCCATC GCGCTGCTACGCACCTGCGCCCTGGCAGGACTGATCGAACGCCTGCTGGCCAGCCCGCAGACGCGCAACCTG GTGCATGCGCTGACCGACCATCTGCGCGGGAACTCCCTGGAACTGGACGAACAGGACAGCGCGCGCCGCCTG GAACACCCCTTCGACAGCCACCCGCCGACCTACCAGCGGATCGCGGACCTTTCCCTGGCGCTCGACGACGAC CTGCTGCGACAGGCAAGGCGCATCGTCAGCGCCGACGACACGCAGTGGCTCAACCGCCTGCTCGATGCAGGC CACGGGGAAAGCCGATGA