ViewGene
Locus Name:
GeneID:
Location:

GeneID:879
TrivialName: PA14_52670
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52670
PAO1 Ortholog Locus:PA0898
Sequence Length:1467
Protein Length:488
Start: 4670169
Stop: 4668703
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04287.1|AE004524_4 (AE004524) succinylglutamate 5-semialdehyde dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 483/488 (98%), Positives = 484/488 (99%)
Sequence:
ATGATGAGTACCCATTACATTGCCGGCCAGTGGCTGGCGGGCCAGGGCGAGACCCTGGAGTCCCTCGACCCG
GTTGGCCAGGGTGTGGTCTGGTCCGGGCGCGGCGCTGACGCCGCCCAGGTCGACGCTGCCGTGCGAGCCGCC
CGCGAGGCCTTCCCGGCCTGGGCGCGGCGCCCGCTGGAGCAGCGCATCGAGTTGCTCGAGCGCTTCGCTGCG
ACCCTCAAGTCCCGCGCCGACGAGCTGGCCCGGGCGATCGGCGAGGAAACCGGCAAGCCGCTGTGGGAGTCG
GCCACCGAAGTGACCAGCATGGTCAACAAGGTGGCGATCTCGGTGCAGGCGTTCCGCGAGCGCACCGGCGAG
AAGTCCGGTCCGCTGGCCGACGCCACCGCCGTGCTGCGGCACAAGCCGCATGGCGTGGTGGCGGTATTCGGT
CCCTACAATTTCCCCGGCCACCTGCCCAACGGTCATATCGTCCCGGCGCTGCTGGCCGGTAACTGCGTGGTG
TTCAAGCCCAGCGAGCTGACCCCGAAGGTCGCCGAGCTGACGCTCAAGGCCTGGATCGAGGCCGGCCTGCCG
GCCGGCGTGCTCAACCTGGTCCAGGGCGGTCGCGAAACCGGCGTCGCGCTGGCCGCCCACCGTGGGCTCGAC
GGTCTGTTCTTCACCGGGTCCAGTCGCACCGGCAACCTGCTGCACAGCCAGTTCGGCGGCCAGCCGCAGAAA
ATCCTGGCGCTGGAGATGGGCGGCAACAACCCGCTGGTGGTGGAGGAGGTCGCCGACCtCGACGCCGCCGTC
TACACCATCATCCAGTCCGCCTTCATCTCCGCCGGCCAGCGCTGCACCTGCGCCCGCCGCCTGcTGGTGCCG
CAGGGCGCCTGGGGCGACGCACTGCTGGCGCGCCTGGTGGCGGTCAGCGCTACCCTGCGGGTCGGGCGCTTC
GACGAACAGCCGGCGCCGTTCATGGGCGCGGTGATTTCGCTGAGCGCCGCCGAGCACCTGCTCAAGGCCCAG
GAGCATTTGATCGGCAAGGGCGCACAGCCGCTGCTGGCGATGACCCAGCCGATCGACGGCGCCGCCCTGCTG
ACCCCGGGCATCCTCGACGTCAGCACGGTGGCCGAGCGACCGGACGAAGAGTTCTTCGGGCCGTTGTTGCAA
GTGATCCGCTACTCCGATTTCGCTGCGGCGATCCGTGAAGCCAACGCCACCCAGTACGGCCTGGCCGCCGGG
CTGCTGTCGGATTCCCGCGAGCGTTTCGAGCAGTTCCTCGTGGAAAGCCGCGCCGGCATCGTCAACTGGAAC
AAGCAGCTCACCGGCGCCGCCAGCAGCGCGCCGTTCGGCGGTATCGGCGCGTCCGGCAACCACCGGCCGAGC
GCCTACTACGCCGCCGATTACTGCGCCTATCCGGTCGCCTCGCTGGAAAGCCCCAGCGTGTCCCTTCCTGCC
ACCCTGACTCCCGGGATCAGCCTATGA
Translation:
MMSTHYIAGQWLAGQGETLESLDPVGQGVVWSGRGADAAQVDAAVRAAREAFPAWARRPLEQRIELLERFAA
TLKSRADELARAIGEETGKPLWESATEVTSMVNKVAISVQAFRERTGEKSGPLADATAVLRHKPHGVVAVFG
PYNFPGHLPNGHIVPALLAGNCVVFKPSELTPKVAELTLKAWIEAGLPAGVLNLVQGGRETGVALAAHRGLD
GLFFTGSSRTGNLLHSQFGGQPQKILALEMGGNNPLVVEEVADLDAAVYTIIQSAFISAGQRCTCARRLLVP
QGAWGDALLARLVAVSATLRVGRFDEQPAPFMGAVISLSAAEHLLKAQEHLIGKGAQPLLAMTQPIDGAALL
TPGILDVSTVAERPDEEFFGPLLQVIRYSDFAAAIREANATQYGLAAGLLSDSRERFEQFLVESRAGIVNWN
KQLTGAASSAPFGGIGASGNHRPSAYYAADYCAYPVASLESPSVSLPATLTPGISL*
AnnotationID:888GeneID:879
AnnotatorUID: danlee
Modification Date/Time: 2004-05-06 11:11:58
Gene Name:aruD
Confidence Code:1
GeneProduct:succinylglutamate 5-semialdehyde dehydrogenase
Cell Localization:()
Synonyms:astD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1012, pfam00171
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Arginine and proline metabolism; Butanoate metabolism;
Glutamate metabolism
Homology:






 
Structural Features:
COG1012, PutA, NAD-dependent aldehyde dehydrogenases. Score: 366, 8e-102
pfam00171, Aldedh, Aldehyde dehydrogenase family. Score: 289, 1e-78








   
Genomic Context:
Arginine-ornithine catabolic locus, adjacent to arginine-ornithine transport locus






   
Comment:


















    ReferenceID:1761




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:16985




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI Conserved Domain Search.






    
Reference Type:Blast (text/plain)







    
Data:PA0898_CDS.cgi


    		




 
URL:

















    ReferenceID:18903




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32006




  
Author/Investigator(s):
        Itoh Y.





  
Title:
        Cloning and characterization of the aru genes encoding enzymes of the catabolic arginine succinyltransferase pathway in Pseudomonas aeruginosa.




  
PubMed:
        98053840


MedLine:
        




    
Source:
J Bacteriol. 1997 Dec;179(23):7280-90.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:879
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1571
                           PA0898_tr
                           translation of PA0898
                           488
                           98.97
                           99.18
                           0
                           2460.0
     

     
     
56957
                           gb|AAG04287.1|AE004524_4
                           (AE004524) succinylglutamate 5-semialdehyde dehydrogenase [Pseudomonas aeruginosa PAO1]
                           488
                           98.97
                           99.18
                           0
                           2460.0
     

     
     
56958
                           gb|AAC46012.1|
                           (AF011922) succinylglutamate 5-semialdehyde dehydrogenase [Pseudomonas aeruginosa]
                           488
                           98.97
                           99.18
                           0
                           2460.0
     

     
     
56959
                           gb|AAN70053.1|AE016644_7
                           (AE016790) succinylglutamic semialdehyde dehydrogenase [Pseudomonas putida KT2440]
                           488
                           81.14
                           89.13
                           1
                           2050.0
     

     
     
56960
                           gb|AAO55354.1|
                           (AE016862) succinylglutamic semialdehyde dehydrogenase [Pseudomonas syringae pv. tomato str. DC3000]
                           489
                           79.34
                           87.32
                           2
                           1997.0
     

     






      

          
GC ORFID: 43881How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0898Glimmer Score: 

          
Start: 283738Stop: 285204

          
Length: 1467


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0898 translation of PA0898Homolog Bit Score 952.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7819 (ORF: BLASTX 767.0), t_PA0898 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATGAGTACCCATTACATTGCCGGCCAGTGGCTGGCGGGCCAGGGCGAGACCCTGGAGTCCCTCGACCCG 
GTTGGCCAGGGTGTGGTCTGGTCCGGGCGCGGCGCTGACGCCGCCCAGGTCGACGCTGCCGTGCGAGCCGCC 
CGCGAGGCCTTCCCGGCCTGGGCGCGGCGCCCGCTGGAGCAGCGCATCGAGTTGCTCGAGCGCTTCGCTGCG 
ACCCTCAAGTCCCGCGCCGACGAGCTGGCCCGGGCGATCGGCGAGGAAACCGGCAAGCCGCTGTGGGAGTCG 
GCCACCGAAGTGACCAGCATGGTCAACAAGGTGGCGATCTCGGTGCAGGCGTTCCGCGAGCGCACCGGCGAG 
AAGTCCGGTCCGCTGGCCGACGCCACCGCCGTGCTGCGGCACAAGCCGCATGGCGTGGTGGCGGTATTCGGT 
CCCTACAATTTCCCCGGCCACCTGCCCAACGGTCATATCGTCCCGGCGCTGCTGGCCGGTAACTGCGTGGTG 
TTCAAGCCCAGCGAGCTGACCCCGAAGGTCGCCGAGCTGACGCTCAAGGCCTGGATCGAGGCCGGCCTGCCG 
GCCGGCGTGCTCAACCTGGTCCAGGGCGGTCGCGAAACCGGCGTCGCGCTGGCCGCCCACCGTGGGCTCGAC 
GGTCTGTTCTTCACCGGGTCCAGTCGCACCGGCAACCTGCTGCACAGCCAGTTCGGCGGCCAGCCGCAGAAA 
ATCCTGGCGCTGGAGATGGGCGGCAACAACCCGCTGGTGGTGGAGGAGGTCGCCGACCtCGACGCCGCCGTC 
TACACCATCATCCAGTCCGCCTTCATCTCCGCCGGCCAGCGCTGCACCTGCGCCCGCCGCCTGcTGGTGCCG 
CAGGGCGCCTGGGGCGACGCACTGCTGGCGCGCCTGGTGGCGGTCAGCGCTACCCTGCGGGTCGGGCGCTTC 
GACGAACAGCCGGCGCCGTTCATGGGCGCGGTGATTTCGCTGAGCGCCGCCGAGCACCTGCTCAAGGCCCAG 
GAGCATTTGATCGGCAAGGGCGCACAGCCGCTGCTGGCGATGACCCAGCCGATCGACGGCGCCGCCCTGCTG 
ACCCCGGGCATCCTCGACGTCAGCACGGTGGCCGAGCGACCGGACGAAGAGTTCTTCGGGCCGTTGTTGCAA 
GTGATCCGCTACTCCGATTTCGCTGCGGCGATCCGTGAAGCCAACGCCACCCAGTACGGCCTGGCCGCCGGG 
CTGCTGTCGGATTCCCGCGAGCGTTTCGAGCAGTTCCTCGTGGAAAGCCGCGCCGGCATCGTCAACTGGAAC 
AAGCAGCTCACCGGCGCCGCCAGCAGCGCGCCGTTCGGCGGTATCGGCGCGTCCGGCAACCACCGGCCGAGC 
GCCTACTACGCCGCCGATTACTGCGCCTATCCGGTCGCCTCGCTGGAAAGCCCCAGCGTGTCCCTTCCTGCC 
ACCCTGACTCCCGGGATCAGCCTATGA