ViewGene
Locus Name:
GeneID:
Location:

GeneID:878
TrivialName: PA14_60730
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60730
PAO1 Ortholog Locus:PA4589
Sequence Length:1392
Protein Length:463
Start: 5412909
Stop: 5411518
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07977.1|AE004872_8 (AE004872) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
Identities = 462/463 (99%), Positives = 463/463 (100%)
Sequence:
TTGCCATTGCTCTGCGCCCTGATCGTCGGCGGACTCTTCGGCACGTCCCAGGCGCAAGCCGGCGGCTTCATG
GTGCCGACCACCAACACGGCGGGCTGGGGCCGTGCGATGGCAGGCGGCTCGCTGTTTCCCAACGATCCGAGC
GCCGCGTTCAACAACCCGGCGGCCATGGCTTTCATCGACAAGCGGATCGCCCAGTTGACGGTCAACTACGCC
GATATCGACATCAAGTACAACGGCGATGCCTACGACTACCAGGGTAATCCCATGACCGGCGGCTACCAGGAC
GGGCCGGGCACCCCCGAGCTGGGTACCAACGATGGCGGCCAGGCCGGATTCGGCGCGTGGCTGCCGACCGGC
TTCCTGGTCGTACCGATCAACGACCGCTTCGCCTTCGGTCTGAGCCAGGTCGTTCCGATGGGAATGCGCAGC
ACCTGGGACCCGAACTGGAAAGGCCGCGATTTCGCGGTGGACACCAAGATCGAGACGATCGGCCTGACCGGC
TCCCTGTCGTTCAAGGTCAACGACAACTTCTCCCTGGGCGCCGGGGTGATCATCCAGCGCACCTCCGGCTTC
GTCAGCCAGAACCTCGATCTCTATGCCTCGGCCGCCAACTCCCCGGGCATGGGCGGGATTCCGTTCCCGGCC
TCGAACTCGTCCGCGCTGATGCGGGTCAAGGTGGACAACACCTCGCCCGGCTTCTTCGCCGGCGCGGTGTGG
AAGCCGACCGACCGCGACACCCTGGGCTTTGCCTACCACGCGAAGATCCGCAACAAGCTGAAGGGTCACTAC
AACCTCTACGACCACGACGGTGGGCTGACCGAGGGCGCCATCGAGGGCGGCACCCCGGGCCTGGCCTATCCG
GGCCTGGACCTGCGCATGGGCGCTTCCGCCTCGGCGCGCCTGGATATCCCCGCCTACGCCTCGCTGGATTGG
GTACACCAGTTCAACGACCGTCTGAGCCTGGGCGCCAGCGCCACCTGGACCGAGTGGTCGTCGTTCCAGGAC
CTGACCCTCAAGTCCCACGGCAACACGATCGTCTCCATCCCCTACACCTACCGGAACACCTGGACCCTGGCG
GTGGGCGGCGACTACAAGGTGACCGAACAGTGGACCATGCGCGCCGGGGTCGCCTACGACCAGACGCCGACC
CACAATGCCACCCGCGACCCGCGGATTCCCGACGGCGATCGCTACTTCGCCTCCCTGGGCGCCGGCTATCGC
TTCCAGTCGATGCCGGAGTTGTCGATCGACGCGGCCTACTCGCGGCAGTTCGTCAAGGAGGTGCCGTTGAAG
ACGGTCAACCAGGATCGCCTGGGCGGCGGACGCCTGGATGGCAGGGCAACCAGCAAGGGACAGGTGTTCAGC
CTGTCCGCGACCTACGACTTCTAG
Translation:
MPLLCALIVGGLFGTSQAQAGGFMVPTTNTAGWGRAMAGGSLFPNDPSAAFNNPAAMAFIDKRIAQLTVNYA
DIDIKYNGDAYDYQGNPMTGGYQDGPGTPELGTNDGGQAGFGAWLPTGFLVVPINDRFAFGLSQVVPMGMRS
TWDPNWKGRDFAVDTKIETIGLTGSLSFKVNDNFSLGAGVIIQRTSGFVSQNLDLYASAANSPGMGGIPFPA
SNSSALMRVKVDNTSPGFFAGAVWKPTDRDTLGFAYHAKIRNKLKGHYNLYDHDGGLTEGAIEGGTPGLAYP
GLDLRMGASASARLDIPAYASLDWVHQFNDRLSLGASATWTEWSSFQDLTLKSHGNTIVSIPYTYRNTWTLA
VGGDYKVTEQWTMRAGVAYDQTPTHNATRDPRIPDGDRYFASLGAGYRFQSMPELSIDAAYSRQFVKEVPLK
TVNQDRLGGGRLDGRATSKGQVFSLSATYDF*
AnnotationID:887GeneID:878
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 06:06:51
Gene Name:
Confidence Code:3
GeneProduct:putative outer membrane protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03349,COG2067
Secondary Functional Category(ies):fatty acid and phospholipid metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAC34854.1| (AJ009579) putative outer membrane protein [Pseudomonas
           fluorescens]
          Length = 482

 Score =  597 bits (1538), Expect = e-170
 Identities = 303/467 (64%), Positives = 353/467 (75%), Gaps = 11/467 (2%)






 
Structural Features:
pfam03349, Toluene_X, Outer membrane protein transport protein 
(OMPP1/FadL/TodX).
CD-Length = 425 residues, 100.0% aligned
Score =  387 bits (995), Expect = 3e-108
Identities = 154/461 (33%), Positives = 224/461 (48%), Gaps = 44/461 (9%)

COG2067, FadL, Long-chain fatty acid transport protein 
[Lipid metabolism]
CD-Length = 440 residues,  99.3% aligned
Score =  356 bits (916), Expect = 4e-99
Identities = 156/466 (33%), Positives = 222/466 (47%), Gaps = 32/466 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14247




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18901




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31631




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:878_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:878
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1570
                           PA4589_tr
                           translation of PA4589
                           463
                           99.78
                           99.99
                           0
                           2464.0
     

     
     
56954
                           gb|AAG07977.1|AE004872_8
                           (AE004872) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
                           463
                           99.56
                           99.99
                           0
                           2462.0
     

     
     
56955
                           emb|CAC34854.1|
                           (AJ009579) putative outer membrane protein [Pseudomonas fluorescens]
                           482
                           63.69
                           74.68
                           19
                           1552.0
     

     
     
56956
                           gb|AAL79769.1|
                           (AF090329) putative outer membrane protein [Pseudomonas fluorescens]
                           476
                           27.31
                           32.56
                           274
                           678.0
     

     






      

          
GC ORFID: 43880How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4589Glimmer Score: 

          
Start: 4676589Stop: 4675198

          
Length: 1392


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4589 translation of PA4589Homolog Bit Score 953.0

          
Other Homologs:  t_PA4589 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGCCATTGCTCTGCGCCCTGATCGTCGGCGGACTCTTCGGCACGTCCCAGGCGCAAGCCGGCGGCTTCATG 
GTGCCGACCACCAACACGGCGGGCTGGGGCCGTGCGATGGCAGGCGGCTCGCTGTTTCCCAACGATCCGAGC 
GCCGCGTTCAACAACCCGGCGGCCATGGCTTTCATCGACAAGCGGATCGCCCAGTTGACGGTCAACTACGCC 
GATATCGACATCAAGTACAACGGCGATGCCTACGACTACCAGGGTAATCCCATGACCGGCGGCTACCAGGAC 
GGGCCGGGCACCCCCGAGCTGGGTACCAACGATGGCGGCCAGGCCGGATTCGGCGCGTGGCTGCCGACCGGC 
TTCCTGGTCGTACCGATCAACGACCGCTTCGCCTTCGGTCTGAGCCAGGTCGTTCCGATGGGAATGCGCAGC 
ACCTGGGACCCGAACTGGAAAGGCCGCGATTTCGCGGTGGACACCAAGATCGAGACGATCGGCCTGACCGGC 
TCCCTGTCGTTCAAGGTCAACGACAACTTCTCCCTGGGCGCCGGGGTGATCATCCAGCGCACCTCCGGCTTC 
GTCAGCCAGAACCTCGATCTCTATGCCTCGGCCGCCAACTCCCCGGGCATGGGCGGGATTCCGTTCCCGGCC 
TCGAACTCGTCCGCGCTGATGCGGGTCAAGGTGGACAACACCTCGCCCGGCTTCTTCGCCGGCGCGGTGTGG 
AAGCCGACCGACCGCGACACCCTGGGCTTTGCCTACCACGCGAAGATCCGCAACAAGCTGAAGGGTCACTAC 
AACCTCTACGACCACGACGGTGGGCTGACCGAGGGCGCCATCGAGGGCGGCACCCCGGGCCTGGCCTATCCG 
GGCCTGGACCTGCGCATGGGCGCTTCCGCCTCGGCGCGCCTGGATATCCCCGCCTACGCCTCGCTGGATTGG 
GTACACCAGTTCAACGACCGTCTGAGCCTGGGCGCCAGCGCCACCTGGACCGAGTGGTCGTCGTTCCAGGAC 
CTGACCCTCAAGTCCCACGGCAACACGATCGTCTCCATCCCCTACACCTACCGGAACACCTGGACCCTGGCG 
GTGGGCGGCGACTACAAGGTGACCGAACAGTGGACCATGCGCGCCGGGGTCGCCTACGACCAGACGCCGACC 
CACAATGCCACCCGCGACCCGCGGATTCCCGACGGCGATCGCTACTTCGCCTCCCTGGGCGCCGGCTATCGC 
TTCCAGTCGATGCCGGAGTTGTCGATCGACGCGGCCTACTCGCGGCAGTTCGTCAAGGAGGTGCCGTTGAAG 
ACGGTCAACCAGGATCGCCTGGGCGGCGGACGCCTGGATGGCAGGGCAACCAGCAAGGGACAGGTGTTCAGC 
CTGTCCGCGACCTACGACTTCTAG