ViewGene
Locus Name:
GeneID:
Location:

GeneID:876
TrivialName: PA14_24860
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24860
PAO1 Ortholog Locus:PA3032
Sequence Length:1404
Protein Length:467
Start: 2172628
Stop: 2174031
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06420.1|AE004728_6 (AE004728) cytochrome c Snr1 [Pseudomonas aeruginosa PAO1]
Identities = 466/467 (99%), Positives = 467/467 (100%)
Sequence:
ATGAAAACGCCCGCCTGGACGCGCCATGCCCTCTGGGTCATGCCGCTCGCCCTGGGGCTGCAATCCGCCGTG
GTCGCGGGGGATGAGCAGCCAAGCAAGACTTCCAGCTATTCGCCGGTGGTGATCAACGAGGACTTCGCCACC
ATCATGAAGCGCATGACGGCGAACAAGCCGTCGATCGAGCAGGCCCACAAGACGCTTCTCGAGCAGCGTTAC
GATCTCAGCGACAGGCCGGCCAAGGGTGCCAGCATGACGCGCGGCAAGCCGCTGCAGGAAGGGGTCCGGGTG
AAGCTGCCGGCCGGCACCAGCTGGGAGGAACTGGCCAGGCTGAGCCCCGAGGAAATCCGCAAGCAGGGGCTG
TTCCCCGGCGGCTTCCTGCCGCTGCCACACCCCAACCATGCGGAGGGCGGGATGGTCTTTCCCAAGTTCCTC
ATCGACGAGATCAAGCGCCAGGAAAGCCGCGACCTGACCCGTTTCGACCTCGACTACGACCTGCCGGACCAC
TTCCTGCCGGAATTCCCGGCACCGATGTTCCTTACCACCCGGCCTGACCTGGGCGATGTGTCCAAGGGCAAG
CTGGTGACCATCGACAACTATTTCGAGCTGTTCAACGGGATTCTCAATCCCAAGCAGCTGGAAGGGCTGCGC
CTGCTGCTAACGGCCTTTCCGCAGCAGCAGTTCAACCTCACCGACGATCGCCGTAGCGAGCATCCGAGCCGC
GGCGTGGCCTGCTTCGACTGCCATGCGAACGGCCACACCAATGCCGCTACCCACCTGGCCGGCGACGTGCGC
CCGCAGCCGTTCCGCCACCGCATCGACACGCCGACGCTGCGCGGGGTGAACATCCAGCGGCTGTTCGGCTCG
CAGAGGGCGCTGAAGACCGTCGAGGACTTCACCGAGTTCGAGCAGCGTGCCGCCTACTTCGACGGCGACCCG
GTAATCGCCACCAAGAAGGGGGTGAACGTGCTCGAGCGTGGCAGTCAGGTGCATTTCATGGGTGAGTTCCAG
GCGCTGCTGGACTTCCCCCCGGCACCGAAGCTGGATGTGGAGGGGCGGCTCGATCCGGGCAAGGCCAGCGAG
CAGGAATTGCGTGGCGAAAAGCTGTTCTACGGCAAGGCGGCCTGCGCCGGGTGCCATGCGCCGCCTTACTTC
ACCGACAACCTGATGCACAACCTGAAGGTGGAGCGCTTCTACGATCCGAAACTGGTCAATGGCGTGATGGCG
TCCGCCGACGGGCCGATCAAGACCTTCCCGTTGCGCGGGATCAAGGATTCGCCGCCGTACCTGCACGACGAC
CGCCTGCTGACCCTGGAGGACACGGTGGAGTTCTTCAACCTGGTGCTGGAGCGCAAGCTGTCCGCGGAAGAG
AAGGGCGACCTGGTGGCCTACCTGCGTACCCTGTGA
Translation:
MKTPAWTRHALWVMPLALGLQSAVVAGDEQPSKTSSYSPVVINEDFATIMKRMTANKPSIEQAHKTLLEQRY
DLSDRPAKGASMTRGKPLQEGVRVKLPAGTSWEELARLSPEEIRKQGLFPGGFLPLPHPNHAEGGMVFPKFL
IDEIKRQESRDLTRFDLDYDLPDHFLPEFPAPMFLTTRPDLGDVSKGKLVTIDNYFELFNGILNPKQLEGLR
LLLTAFPQQQFNLTDDRRSEHPSRGVACFDCHANGHTNAATHLAGDVRPQPFRHRIDTPTLRGVNIQRLFGS
QRALKTVEDFTEFEQRAAYFDGDPVIATKKGVNVLERGSQVHFMGEFQALLDFPPAPKLDVEGRLDPGKASE
QELRGEKLFYGKAACAGCHAPPYFTDNLMHNLKVERFYDPKLVNGVMASADGPIKTFPLRGIKDSPPYLHDD
RLLTLEDTVEFFNLVLERKLSAEEKGDLVAYLRTL*
AnnotationID:885GeneID:876
AnnotatorUID: diggins
Modification Date/Time: 2004-11-25 13:01:34
Gene Name:snr1
Confidence Code:1
GeneProduct:cytochrome c Snr1
Cell Localization:()
Synonyms:hsc
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:cytochrome c precursor
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAB66558.1| (AF015192) cytochrome c precursor [Desulfomonile tiedjei]
          Length = 466

 Score =  699 bits (1805), Expect = 0.0
 Identities = 339/458 (74%), Positives = 388/458 (84%), Gaps = 1/458 (0%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:1755




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18897




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36025




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:876_cdd.html


    		




 
URL:

















    ReferenceID:36488




  
Author/Investigator(s):
        Irani VR, Darzins A, Rowe JJ.





  
Title:
        Snr, new genetic loci common to the nitrate reduction systems of Pseudomonas aeruginosa PAO1.




  
PubMed:
        9175552


MedLine:
        




    
Source:
Curr Microbiol. 1997 Jul;35(1):9-13.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9175552

















    ReferenceID:36489




  
Author/Investigator(s):
        Kerschen EJ, Irani VR, Hassett DJ, Rowe JJ.





  
Title:
        snr-1 gene is required for nitrate reduction in Pseudomonas aeruginosa PAO1.




  
PubMed:
        11222615


MedLine:
        




    
Source:
J Bacteriol. 2001 Mar;183(6):2125-31.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11222615









           
Homologs By Global Alignment 

           

       



     
Gene ID:876
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1568
                           PA3032_tr
                           translation of PA3032
                           467
                           99.78
                           99.99
                           0
                           2464.0
     

     
     
56893
                           gb|AAG06420.1|AE004728_6
                           (AE004728) cytochrome c Snr1 [Pseudomonas aeruginosa PAO1]
                           467
                           99.78
                           99.99
                           0
                           2464.0
     

     
     
56894
                           gb|AAB66558.1|
                           (AF015192) cytochrome c precursor [Desulfomonile tiedjei]
                           469
                           73.13
                           83.58
                           5
                           1801.0
     

     
     
56895
                           gb|AAR36205.1|
                           (AE017217) cytochrome c Hsc [Geobacter sulfurreducens PCA]
                           472
                           69.49
                           82.20
                           10
                           1786.0
     

     
     
56896
                           gb|AAC15717.1|
                           (AF053982) cytochrome c precursor protein [Pseudomonas aeruginosa]
                           470
                           60.85
                           60.85
                           175
                           1500.0
     

     






      

          
GC ORFID: 43878How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3032Glimmer Score: 

          
Start: 2781300Stop: 2779897

          
Length: 1404


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3032 translation of PA3032Homolog Bit Score 953.0

          
Other Homologs:  t_PA3032 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAACGCCCGCCTGGACGCGCCATGCCCTCTGGGTCATGCCGCTCGCCCTGGGGCTGCAATCCGCCGTG 
GTCGCGGGGGATGAGCAGCCAAGCAAGACTTCCAGCTATTCGCCGGTGGTGATCAACGAGGACTTCGCCACC 
ATCATGAAGCGCATGACGGCGAACAAGCCGTCGATCGAGCAGGCCCACAAGACGCTTCTCGAGCAGCGTTAC 
GATCTCAGCGACAGGCCGGCCAAGGGTGCCAGCATGACGCGCGGCAAGCCGCTGCAGGAAGGGGTCCGGGTG 
AAGCTGCCGGCCGGCACCAGCTGGGAGGAACTGGCCAGGCTGAGCCCCGAGGAAATCCGCAAGCAGGGGCTG 
TTCCCCGGCGGCTTCCTGCCGCTGCCACACCCCAACCATGCGGAGGGCGGGATGGTCTTTCCCAAGTTCCTC 
ATCGACGAGATCAAGCGCCAGGAAAGCCGCGACCTGACCCGTTTCGACCTCGACTACGACCTGCCGGACCAC 
TTCCTGCCGGAATTCCCGGCACCGATGTTCCTTACCACCCGGCCTGACCTGGGCGATGTGTCCAAGGGCAAG 
CTGGTGACCATCGACAACTATTTCGAGCTGTTCAACGGGATTCTCAATCCCAAGCAGCTGGAAGGGCTGCGC 
CTGCTGCTAACGGCCTTTCCGCAGCAGCAGTTCAACCTCACCGACGATCGCCGTAGCGAGCATCCGAGCCGC 
GGCGTGGCCTGCTTCGACTGCCATGCGAACGGCCACACCAATGCCGCTACCCACCTGGCCGGCGACGTGCGC 
CCGCAGCCGTTCCGCCACCGCATCGACACGCCGACGCTGCGCGGGGTGAACATCCAGCGGCTGTTCGGCTCG 
CAGAGGGCGCTGAAGACCGTCGAGGACTTCACCGAGTTCGAGCAGCGTGCCGCCTACTTCGACGGCGACCCG 
GTAATCGCCACCAAGAAGGGGGTGAACGTGCTCGAGCGTGGCAGTCAGGTGCATTTCATGGGTGAGTTCCAG 
GCGCTGCTGGACTTCCCCCCGGCACCGAAGCTGGATGTGGAGGGGCGGCTCGATCCGGGCAAGGCCAGCGAG 
CAGGAATTGCGTGGCGAAAAGCTGTTCTACGGCAAGGCGGCCTGCGCCGGGTGCCATGCGCCGCCTTACTTC 
ACCGACAACCTGATGCACAACCTGAAGGTGGAGCGCTTCTACGATCCGAAACTGGTCAATGGCGTGATGGCG 
TCCGCCGACGGGCCGATCAAGACCTTCCCGTTGCGCGGGATCAAGGATTCGCCGCCGTACCTGCACGACGAC 
CGCCTGCTGACCCTGGAGGACACGGTGGAGTTCTTCAACCTGGTGCTGGAGCGCAAGCTGTCCGCGGAAGAG 
AAGGGCGACCTGGTGGCCTACCTGCGTACCCTGTGA