ViewGene
Locus Name:
GeneID:
Location:

GeneID:875
TrivialName: PA14_40100
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40100
PAO1 Ortholog Locus:PA1888
Sequence Length:1410
Protein Length:469
Start: 3573078
Stop: 3574487
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05277.1|AE004614_11 (AE004614) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 464/469 (98%), Positives = 466/469 (99%)
Sequence:
ATGAAAATACTCGCCCTTCTCGCAGCCTGCCTGCTGGCAGGCTGCGCCGCCAACGCCCCGCTGCGCGATGAC
AGCGAATCGACCTGCGCCGACATCCGGCCTTGCAGCGACAGCTACTACGAACGCCATCCGAACTACGAGATC
GGCTTCGTCGAATATAGCGAGCGCGGCAACGACTTCGCGCCTGCCAGAACGCAACGCCTGATCGACCAGCTA
AAGCGCTACTCCGCCCGGGGGGACATCGCCATGGTGGTGTTCATTCACGGTTGGAAGCACAACGCGGGACGG
GACGACGGCAACGTCGCCAGCTTCAACAAGGCACTCGCCAATCTCGCCTCCTCCGGGGTGCTGGGCAAACGC
AGGCTGGTCGGCCTCTATGTTGGCTGGCGGGGCAAGTCGATGCATGGCCTGTATAGCGAGAACCTGACCTAC
TGGGACAGGAAGGCCGTCGCCGAGGAAGTCGGCCGGGGTGGCGTCGCCGAGTTGCTCGCCCAGTTGGAACGG
ATCGATCGCAAGGACAGGAACTATCTGGTGATCGTCGGCCACAGCTTCGGCGGCGCAATCACCCTCGGCGCA
CTTCACGACCCGTTGCTCGAACGCCTGCTGGCTCTGCAGGACGGTCAGCGGATACGCGCCTTCGGCGACGCG
GTAATCATGCTGAATCCGGCGATAGAGGCCAATCAGGGCCTGTTGCTCAAGGAGAACAGCCTCAAGGTCGGC
GCCCTGGGAGCCCGGCCGCCGCCGCTGCTGTACGTCATCAGTTCGCACGGCGACAGCGCCACCCACTTCGCC
TTCCCGCTCGGCCAATGGGTCGGCGTCAACCTCACCTGGAGCCAGGTGGACCTGGACAGGACCTACAACGGA
ACCCGCTATCGCCTCCGGGAAGAAGACCTGGATACCACCGCCCTCGGCAACTACAGCCTGTATCGGACCGCC
CTGCTGATCGACCGCGAGTGCCCGCTGCCGGATGGCAGCGACAACTGCGCGCCAAGACCGCCCGAACCACGG
GTGATCGACGACACCGATATCGGCAAATGGCGCTTCAGGAGCTTCTGCAGCGCGGACGGCGGCAACGCCGAT
CCGGCGCTGCCGCGCATGCCCTGCTACAGCAACGAGCCGGTCAACTTCATCTACACCTCGCAGTCCTTCATC
GCCGACCACAACGATATCTTCAACGACCAGGTGATCGCCTTCATGGCCACCGCCGTCAGCAAGGCCATCTAC
GAACGTACGGCTGGCGCCTCCTACTACCGGGAGTGCCACGACCCGGTGCGGAAGAACTTCTCGTTCGGCAAG
TGCTTCGACTTCCACTACCTCAAAGCCACGGCCATGCACCGGCGGCTGCAACGGCAACTCTCGGAACCCGGC
ACCCGCAGCGAACAGGACGTCCTCTATGAAAACCCTCTCTAG
Translation:
MKILALLAACLLAGCAANAPLRDDSESTCADIRPCSDSYYERHPNYEIGFVEYSERGNDFAPARTQRLIDQL
KRYSARGDIAMVVFIHGWKHNAGRDDGNVASFNKALANLASSGVLGKRRLVGLYVGWRGKSMHGLYSENLTY
WDRKAVAEEVGRGGVAELLAQLERIDRKDRNYLVIVGHSFGGAITLGALHDPLLERLLALQDGQRIRAFGDA
VIMLNPAIEANQGLLLKENSLKVGALGARPPPLLYVISSHGDSATHFAFPLGQWVGVNLTWSQVDLDRTYNG
TRYRLREEDLDTTALGNYSLYRTALLIDRECPLPDGSDNCAPRPPEPRVIDDTDIGKWRFRSFCSADGGNAD
PALPRMPCYSNEPVNFIYTSQSFIADHNDIFNDQVIAFMATAVSKAIYERTAGASYYRECHDPVRKNFSFGK
CFDFHYLKATAMHRRLQRQLSEPGTRSEQDVLYENPL*
AnnotationID:884GeneID:875
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 09:09:08
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1888
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD84790.1| (BX321859) Esterase/lipase/thioesterase family active site:Lipase
           (Class 3) [Nitrosomonas europaea ATCC 19718]
          Length = 422

 Score =  149 bits (377), Expect = 3e-35
 Identities = 98/288 (34%), Positives = 150/288 (52%), Gaps = 22/288 (7%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:1753




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18895




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37042




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:875_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:875
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1567
                           PA1888_tr
                           translation of PA1888
                           469
                           98.93
                           99.36
                           0
                           2464.0
     

     
     
56892
                           gb|AAG05277.1|AE004614_11
                           (AE004614) hypothetical protein PA1888 [Pseudomonas aeruginosa PAO1]
                           469
                           98.93
                           99.36
                           0
                           2464.0
     

     






      

          
GC ORFID: 43877How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1888Glimmer Score: 

          
Start: 1380832Stop: 1379423

          
Length: 1410


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1888 translation of PA1888Homolog Bit Score 953.0

          
Other Homologs:  t_PA1888 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAATACTCGCCCTTCTCGCAGCCTGCCTGCTGGCAGGCTGCGCCGCCAACGCCCCGCTGCGCGATGAC 
AGCGAATCGACCTGCGCCGACATCCGGCCTTGCAGCGACAGCTACTACGAACGCCATCCGAACTACGAGATC 
GGCTTCGTCGAATATAGCGAGCGCGGCAACGACTTCGCGCCTGCCAGAACGCAACGCCTGATCGACCAGCTA 
AAGCGCTACTCCGCCCGGGGGGACATCGCCATGGTGGTGTTCATTCACGGTTGGAAGCACAACGCGGGACGG 
GACGACGGCAACGTCGCCAGCTTCAACAAGGCACTCGCCAATCTCGCCTCCTCCGGGGTGCTGGGCAAACGC 
AGGCTGGTCGGCCTCTATGTTGGCTGGCGGGGCAAGTCGATGCATGGCCTGTATAGCGAGAACCTGACCTAC 
TGGGACAGGAAGGCCGTCGCCGAGGAAGTCGGCCGGGGTGGCGTCGCCGAGTTGCTCGCCCAGTTGGAACGG 
ATCGATCGCAAGGACAGGAACTATCTGGTGATCGTCGGCCACAGCTTCGGCGGCGCAATCACCCTCGGCGCA 
CTTCACGACCCGTTGCTCGAACGCCTGCTGGCTCTGCAGGACGGTCAGCGGATACGCGCCTTCGGCGACGCG 
GTAATCATGCTGAATCCGGCGATAGAGGCCAATCAGGGCCTGTTGCTCAAGGAGAACAGCCTCAAGGTCGGC 
GCCCTGGGAGCCCGGCCGCCGCCGCTGCTGTACGTCATCAGTTCGCACGGCGACAGCGCCACCCACTTCGCC 
TTCCCGCTCGGCCAATGGGTCGGCGTCAACCTCACCTGGAGCCAGGTGGACCTGGACAGGACCTACAACGGA 
ACCCGCTATCGCCTCCGGGAAGAAGACCTGGATACCACCGCCCTCGGCAACTACAGCCTGTATCGGACCGCC 
CTGCTGATCGACCGCGAGTGCCCGCTGCCGGATGGCAGCGACAACTGCGCGCCAAGACCGCCCGAACCACGG 
GTGATCGACGACACCGATATCGGCAAATGGCGCTTCAGGAGCTTCTGCAGCGCGGACGGCGGCAACGCCGAT 
CCGGCGCTGCCGCGCATGCCCTGCTACAGCAACGAGCCGGTCAACTTCATCTACACCTCGCAGTCCTTCATC 
GCCGACCACAACGATATCTTCAACGACCAGGTGATCGCCTTCATGGCCACCGCCGTCAGCAAGGCCATCTAC 
GAACGTACGGCTGGCGCCTCCTACTACCGGGAGTGCCACGACCCGGTGCGGAAGAACTTCTCGTTCGGCAAG 
TGCTTCGACTTCCACTACCTCAAAGCCACGGCCATGCACCGGCGGCTGCAACGGCAACTCTCGGAACCCGGC 
ACCCGCAGCGAACAGGACGTCCTCTATGAAAACCCTCTCTAG