ViewGene
Locus Name:
GeneID:
Location:

GeneID:874
TrivialName: PA14_18480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18480
PAO1 Ortholog Locus:PA3546
Sequence Length:1425
Protein Length:474
Start: 1586547
Stop: 1585123
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAA91126.1| (U27829) AlgX [Pseudomonas aeruginosa]
Identities = 474/474 (100%), Positives = 474/474 (100%)
Sequence:
ATGAAAACCCGCACTTCCCGACTGTTCCGCCTGAGCGCCCTGGCCGCCGGCCTCTGCCTGGCCCAGGCAGCC
CTCGCCGCCGACCCCGGCGCGGCGCCGAGCTACCAGGCGCTGCCGGCCGGCAACCTGTGCCCGGCCGCCGCC
GACGACTCGCGCTACAACACCAAGTACCTGGGCTTCTTCACCCACCTGGTGCAGGCCCAGGATGACTGGCTG
TTCCGCACCACCTACGACCTGCGTACCGACTTCGGCACCAGCGCCGAAGGCTGGCGCGAACTCCGCGCACTG
CGCGACGAACTCAAGCGCAAGGGCATCGAGCTGGTGGTGGTCTACCAGCCAACCCGCGGCCTGGTGAACCGC
GAGAAGCTCAGCCCGGCGGAAAAGGCCGGCTTCGACTACGAGCTGGCGAAGAAGAACTACCTGGCGACCATC
GCCCGCTTCCGCCAGGCCGGCATCTGGACCCCGGACTTCTCGCCGCTGTTCGACGAGAAGGAGGAGCACGCC
TACTACTTCAAGGGCGACCACCACTGGACTCCCCATGGCGCCCGGCGCAGCGCGAAGATCGTGGCCGAGACG
CTGAAGCAGGTGCCCGGCTTCGAGGAGATCCCCAAGAAGCAGTTCGAAAGCAAGCGCGTCGGCCTGCTGTCC
AAGCTCGGCACCTTCCACAAGGCCGCCGCGCAACTCTGCGGCAACAGCTACGCCACCCAGTACGTCGACCGC
TTCGAGACCGAGCCGGTGGGCGCCAGCGACAGCGGCGACCTGTTCGGCGACGGCGGCAACCCGCAGATTGCC
CTGGTCGGCACCTCCAACAGCGGCCCGGCCTACAACTTCGCCGGCTTCCTGGAGGAGTTCAGCGGCGCCGAC
ATCCTCAACAACGCGGTGTCCGGCGGCGGCTTCGACAGTTCGCTGCTGGCGTACATGACCAGCGAGGAATTC
CACAAGAACCCGCCGAAGATCCTCATCTGGGAATTCGCCACCCACTACGACATGGCGCAGAAGAGCTTCTAC
CGCCAGGCCATGCCGCTGGTGGACAACGGCTGCTCCGGCCGGAAGACCGTGCTCAGCCGCAAGGTCAAGCTG
CGCCAGGGCCGCAACGAGGTGCTGCTGAACAGCGCCGCGCTACCGATCCGCAGCGGCAGCTACGTCGCCGAC
GTGACCTACAGCGACCCTTCGGTACACGAGTTGAAGAACACCATCTGGTACATGAACGGCCGCCGCGAGCAG
TTGAAGATCGAGCAGTCGAAAGCCGTCGATACCGGCGGCCGCTACGTCTTCCAGCTACGCAACGACAGCGAC
TGGGCCGACCAGCAGTTCCTTTCCCTGGAAATCGAAGCGCCGGAGGACATGCCCCAGGGCCTGGAGGTCCAG
GCCAGCATCTGCCAGGCGGCGCCCGCCAAGGCCAGCCAGTCGGTGGCCGGGAGGTAA
Translation:
MKTRTSRLFRLSALAAGLCLAQAALAADPGAAPSYQALPAGNLCPAAADDSRYNTKYLGFFTHLVQAQDDWL
FRTTYDLRTDFGTSAEGWRELRALRDELKRKGIELVVVYQPTRGLVNREKLSPAEKAGFDYELAKKNYLATI
ARFRQAGIWTPDFSPLFDEKEEHAYYFKGDHHWTPHGARRSAKIVAETLKQVPGFEEIPKKQFESKRVGLLS
KLGTFHKAAAQLCGNSYATQYVDRFETEPVGASDSGDLFGDGGNPQIALVGTSNSGPAYNFAGFLEEFSGAD
ILNNAVSGGGFDSSLLAYMTSEEFHKNPPKILIWEFATHYDMAQKSFYRQAMPLVDNGCSGRKTVLSRKVKL
RQGRNEVLLNSAALPIRSGSYVADVTYSDPSVHELKNTIWYMNGRREQLKIEQSKAVDTGGRYVFQLRNDSD
WADQQFLSLEIEAPEDMPQGLEVQASICQAAPAKASQSVAGR*
AnnotationID:883GeneID:874
AnnotatorUID: danlee
Modification Date/Time: 2006-03-11 16:04:24
Gene Name:algX
Confidence Code:1
GeneProduct:alginate biosynthesis protein AlgX
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(23) Secreted Factors (toxins, enzymes, alginate)
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):Adaptation, protection; Cell wall / LPS / capsule
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54762.1| (AE016860) alginate biosynthesis protein AlgX [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 479

 Score =  513 bits (1322), Expect = e-145
 Identities = 250/463 (53%), Positives = 318/463 (68%), Gaps = 2/463 (0%)








 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:1751




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18893




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34133




  
Author/Investigator(s):
        Monday SR, Schiller NL.





  
Title:
        Alginate synthesis in Pseudomonas aeruginosa: the role of AlgL (alginate lyase) and AlgX.




  
PubMed:
        8550492


MedLine:
        




    
Source:
J Bacteriol. 1996 Feb;178(3):625-32.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8550492









           
Homologs By Global Alignment 

           

       



     
Gene ID:874
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
56886
                           gb|AAA91126.1|
                           (U27829) AlgX [Pseudomonas aeruginosa]
                           474
                           99.99
                           99.99
                           0
                           2476.0
     

     
     
1566
                           PA3546_tr
                           translation of PA3546
                           474
                           99.78
                           99.78
                           0
                           2467.0
     

     
     
56887
                           gb|AAG06934.1|AE004775_5
                           (AE004775) alginate biosynthesis protein AlgX [Pseudomonas aeruginosa PAO1]
                           474
                           99.78
                           99.78
                           0
                           2467.0
     

     
     
56888
                           gb|AAO54762.1|
                           (AE016860) alginate biosynthesis protein AlgX [Pseudomonas syringae pv. tomato str. DC3000]
                           479
                           53.02
                           67.64
                           5
                           1322.0
     

     
     
56889
                           gb|AAP46695.1|
                           (AF527790) AlgX [Pseudomonas fluorescens]
                           485
                           50.72
                           65.77
                           11
                           1283.0
     

     






      

          
GC ORFID: 43876How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3546Glimmer Score: 

          
Start: 3367388Stop: 3368812

          
Length: 1425


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA3546 translation of PA3546Homolog Bit Score 954.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4997 (ORF: BLASTX 513.0), t_PA3546 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAACCCGCACTTCCCGACTGTTCCGCCTGAGCGCCCTGGCCGCCGGCCTCTGCCTGGCCCAGGCAGCC 
CTCGCCGCCGACCCCGGCGCGGCGCCGAGCTACCAGGCGCTGCCGGCCGGCAACCTGTGCCCGGCCGCCGCC 
GACGACTCGCGCTACAACACCAAGTACCTGGGCTTCTTCACCCACCTGGTGCAGGCCCAGGATGACTGGCTG 
TTCCGCACCACCTACGACCTGCGTACCGACTTCGGCACCAGCGCCGAAGGCTGGCGCGAACTCCGCGCACTG 
CGCGACGAACTCAAGCGCAAGGGCATCGAGCTGGTGGTGGTCTACCAGCCAACCCGCGGCCTGGTGAACCGC 
GAGAAGCTCAGCCCGGCGGAAAAGGCCGGCTTCGACTACGAGCTGGCGAAGAAGAACTACCTGGCGACCATC 
GCCCGCTTCCGCCAGGCCGGCATCTGGACCCCGGACTTCTCGCCGCTGTTCGACGAGAAGGAGGAGCACGCC 
TACTACTTCAAGGGCGACCACCACTGGACTCCCCATGGCGCCCGGCGCAGCGCGAAGATCGTGGCCGAGACG 
CTGAAGCAGGTGCCCGGCTTCGAGGAGATCCCCAAGAAGCAGTTCGAAAGCAAGCGCGTCGGCCTGCTGTCC 
AAGCTCGGCACCTTCCACAAGGCCGCCGCGCAACTCTGCGGCAACAGCTACGCCACCCAGTACGTCGACCGC 
TTCGAGACCGAGCCGGTGGGCGCCAGCGACAGCGGCGACCTGTTCGGCGACGGCGGCAACCCGCAGATTGCC 
CTGGTCGGCACCTCCAACAGCGGCCCGGCCTACAACTTCGCCGGCTTCCTGGAGGAGTTCAGCGGCGCCGAC 
ATCCTCAACAACGCGGTGTCCGGCGGCGGCTTCGACAGTTCGCTGCTGGCGTACATGACCAGCGAGGAATTC 
CACAAGAACCCGCCGAAGATCCTCATCTGGGAATTCGCCACCCACTACGACATGGCGCAGAAGAGCTTCTAC 
CGCCAGGCCATGCCGCTGGTGGACAACGGCTGCTCCGGCCGGAAGACCGTGCTCAGCCGCAAGGTCAAGCTG 
CGCCAGGGCCGCAACGAGGTGCTGCTGAACAGCGCCGCGCTACCGATCCGCAGCGGCAGCTACGTCGCCGAC 
GTGACCTACAGCGACCCTTCGGTACACGAGTTGAAGAACACCATCTGGTACATGAACGGCCGCCGCGAGCAG 
TTGAAGATCGAGCAGTCGAAAGCCGTCGATACCGGCGGCCGCTACGTCTTCCAGCTACGCAACGACAGCGAC 
TGGGCCGACCAGCAGTTCCTTTCCCTGGAAATCGAAGCGCCGGAGGACATGCCCCAGGGCCTGGAGGTCCAG 
GCCAGCATCTGCCAGGCGGCGCCCGCCAAGGCCAGCCAGTCGGTGGCCGGGAGGTAA