ViewGene
Locus Name:
GeneID:
Location:

GeneID:873
TrivialName: PA14_32160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32160
PAO1 Ortholog Locus:PA2512
Sequence Length:1395
Protein Length:464
Start: 2797907
Stop: 2796513
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05900.1|AE004678_6 (AE004678) anthranilate dioxygenase large subunit [Pseudomonas aeruginosa PAO1]
Identities = 463/464 (99%), Positives = 463/464 (99%)
Sequence:
ATGAACGCTACCCGCAGAAGCCTGGAACAGTGGCGCGACTATGTCGGCGGCTGTCTCGACTTCCGTCCCGAG
GAAGGCATCTTCCGCATCGCCCGGGACATGTTCACCGAACCGGAGCTGTTCGACCTGGAGATGGAGCTGATC
TTCGAAAAGAACTGGATCTACGCCTGCCACGAAAGCGAACTGGCCAGGCCCCACGACTTCGTCACCCTGCGC
GCCGGACGCCAGCCGCTGATCGTCACCCGCGACGGCAACGGCCAGTTGCACGCGCTGGTCAACGCCTGCCAG
CATCGCGGCGCGACCCTGGTGCGGGTCGGCAAGGGCAACCAGTCGACCTTCACCTGTCCGTTCCATGCCTGG
TGCTACAAGAACGACGGCCGGCTGGTGAAGGTCAAGGCGCCGGGCGAATACCCGGAAGGCTTCGACAAGGCC
ACCCGCGGCCTGAAGAAAGCGCGCATCCAGAGCTACAGGGGCTTCGTCTTCGTCAGCCTGGACGTCGCCGGC
GAGGACGACCTGGTGGACTTCCTCGGCGACGCCCGGGTGTTCCTCGACATGCTGGTGGCGCAGTCTCCCAGC
GGCGAGCTGGAAGTGCTGCCCGGCACCTCCACCTACACCTACGAAGGCAACTGGAAGCTGCAGAACGAGAAT
GGCCTGGACGGCTATCACGTCAGTACCGTGCACTACAACTACGTAGCCACCGTGCAGCACCGCCAGCAGGTC
GAGGCCGAGCGCGGCGGCGCGGCCGCCACCCTCGACTACAGCAAGCTCGGCGCCGGCGACGCGGCCACCGAC
GACGGCTGGTTCTCCTTCGCCAACGGCCACAGCGTGCTCTTCAGCGAGATGCCCAACCCCGCCGTACGCCCC
GGCTACGCCAGCGTGATGCCGCGGCTGGTGGCGGAATACGGCCAGGCCCGCGCCGAGTGGATGATGCATCGC
CTGCGCAACCTCAATCTCTACCCCAGCCTGTTCGTCATCGACCAGATCAGCTCGCAGCTGCGCATCGTCCGC
CCGCTGGCCTGGAACCGTACCGAGATCGTCAGCCAGTGCATCGGCGTCAAGGGCGAGTCGGACGCCGACCGG
GAGAACCGGATCCGCCAGTTCGAGGACTTCTTCAACGTCTCCGGGATGGGCACGCCCGACGATCTGGTGGAG
TTCCGCGAAGCCCAGCGTGGCTTCCAGGCCCGCCTGGAGCGCTGGAGCGACATCTCCCGCGGCCACGGCAAG
TGGCTCGAAGGCGCGACGCCGAACAGCCAGGCGCTGGGTATCGCGCCGCTGCTGACCGGCACCGAGATCACC
CACGAAGGCCTCTACGTCAACCAGCACGCGCATTGGCGGCGCTTCCTCCTCGACGGCCTGGAGCGCCTGGCC
CTGCGCGCGAAGGAGGTGACCCCATGA
Translation:
MNATRRSLEQWRDYVGGCLDFRPEEGIFRIARDMFTEPELFDLEMELIFEKNWIYACHESELARPHDFVTLR
AGRQPLIVTRDGNGQLHALVNACQHRGATLVRVGKGNQSTFTCPFHAWCYKNDGRLVKVKAPGEYPEGFDKA
TRGLKKARIQSYRGFVFVSLDVAGEDDLVDFLGDARVFLDMLVAQSPSGELEVLPGTSTYTYEGNWKLQNEN
GLDGYHVSTVHYNYVATVQHRQQVEAERGGAAATLDYSKLGAGDAATDDGWFSFANGHSVLFSEMPNPAVRP
GYASVMPRLVAEYGQARAEWMMHRLRNLNLYPSLFVIDQISSQLRIVRPLAWNRTEIVSQCIGVKGESDADR
ENRIRQFEDFFNVSGMGTPDDLVEFREAQRGFQARLERWSDISRGHGKWLEGATPNSQALGIAPLLTGTEIT
HEGLYVNQHAHWRRFLLDGLERLALRAKEVTP*
AnnotationID:882GeneID:873
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 17:05:19
Gene Name:antA
Confidence Code:2
GeneProduct:anthranilate dioxygenase large subunit
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4638
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAK52293.1| (AY026914) putative anthranilate dioxygenase large subunit AntA
           [Pseudomonas putida]
          Length = 464

 Score =  954 bits (2467), Expect = 0.0
 Identities = 463/464 (99%), Positives = 463/464 (99%)

>dbj|BAC41526.1| (AB088420) large subunit of terminal oxygenase component of
           anthranilate 1,2-dioxygenase [Pseudomonas resinovorans]
          Length = 467

 Score =  795 bits (2054), Expect = 0.0
 Identities = 366/455 (80%), Positives = 420/455 (92%), Gaps = 1/455 (0%)

>gb|AAC34813.1| (AF071556) anthranilate dioxygenase large subunit [Acinetobacter
           sp. ADP1]
          Length = 471

 Score =  736 bits (1901), Expect = 0.0
 Identities = 341/460 (74%), Positives = 395/460 (85%)






 
Structural Features:
COG4638, HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, 
large terminal subunit 
[Inorganic ion transport and metabolism]
CD-Length = 367 residues,  99.2% aligned
Score =  206 bits (524), Expect = 6e-54
Identities = 109/434 (25%), Positives = 156/434 (35%), Gaps = 72/434 (16%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1749




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18891




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33061




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:873_cdd.html


    		




 
URL:

















    ReferenceID:34508




  
Author/Investigator(s):
        Bundy BM, Campbell AL, Neidle EL.





  
Title:
        Similarities between the antABC-encoded anthranilate dioxygenase and the benABC-encoded benzoate dioxygenase of Acinetobacter sp. strain ADP1.




  
PubMed:
        9721284


MedLine:
        




    
Source:
J Bacteriol. 1998 Sep;180(17):4466-74.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9721284









           
Homologs By Global Alignment 

           

       



     
Gene ID:873
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1564
                           PA2512_tr
                           translation of PA2512
                           464
                           99.78
                           99.78
                           0
                           2467.0
     

     
     
56842
                           gb|AAG05900.1|AE004678_6
                           (AE004678) anthranilate dioxygenase large subunit [Pseudomonas aeruginosa PAO1]
                           464
                           99.78
                           99.78
                           0
                           2467.0
     

     
     
56843
                           gb|AAK52293.1|
                           (AY026914) putative anthranilate dioxygenase large subunit AntA [Pseudomonas putida]
                           464
                           99.78
                           99.78
                           0
                           2467.0
     

     
     
56844
                           dbj|BAC41526.1|
                           (AB088420) large subunit of terminal oxygenase component of anthranilate 1,2-dioxygenase [Pseudomonas resinovorans]
                           470
                           78.51
                           90.42
                           9
                           2058.0
     

     
     
56845
                           dbj|BAB32747.1|
                           (AB047548) large subunit of terminal oxygenase component of anthranilate 1,2-dioxygenase [Pseudomonas resinovorans]
                           470
                           78.51
                           90.42
                           9
                           2058.0
     

     






      

          
GC ORFID: 43875How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2512Glimmer Score: 

          
Start: 2156017Stop: 2157411

          
Length: 1395


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2512 translation of PA2512Homolog Bit Score 954.0

          
Other Homologs:  t_PA2518 (ORF: BLASTX 428.0), t_PA2512 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGCTACCCGCAGAAGCCTGGAACAGTGGCGCGACTATGTCGGCGGCTGTCTCGACTTCCGTCCCGAG 
GAAGGCATCTTCCGCATCGCCCGGGACATGTTCACCGAACCGGAGCTGTTCGACCTGGAGATGGAGCTGATC 
TTCGAAAAGAACTGGATCTACGCCTGCCACGAAAGCGAACTGGCCAGGCCCCACGACTTCGTCACCCTGCGC 
GCCGGACGCCAGCCGCTGATCGTCACCCGCGACGGCAACGGCCAGTTGCACGCGCTGGTCAACGCCTGCCAG 
CATCGCGGCGCGACCCTGGTGCGGGTCGGCAAGGGCAACCAGTCGACCTTCACCTGTCCGTTCCATGCCTGG 
TGCTACAAGAACGACGGCCGGCTGGTGAAGGTCAAGGCGCCGGGCGAATACCCGGAAGGCTTCGACAAGGCC 
ACCCGCGGCCTGAAGAAAGCGCGCATCCAGAGCTACAGGGGCTTCGTCTTCGTCAGCCTGGACGTCGCCGGC 
GAGGACGACCTGGTGGACTTCCTCGGCGACGCCCGGGTGTTCCTCGACATGCTGGTGGCGCAGTCTCCCAGC 
GGCGAGCTGGAAGTGCTGCCCGGCACCTCCACCTACACCTACGAAGGCAACTGGAAGCTGCAGAACGAGAAT 
GGCCTGGACGGCTATCACGTCAGTACCGTGCACTACAACTACGTAGCCACCGTGCAGCACCGCCAGCAGGTC 
GAGGCCGAGCGCGGCGGCGCGGCCGCCACCCTCGACTACAGCAAGCTCGGCGCCGGCGACGCGGCCACCGAC 
GACGGCTGGTTCTCCTTCGCCAACGGCCACAGCGTGCTCTTCAGCGAGATGCCCAACCCCGCCGTACGCCCC 
GGCTACGCCAGCGTGATGCCGCGGCTGGTGGCGGAATACGGCCAGGCCCGCGCCGAGTGGATGATGCATCGC 
CTGCGCAACCTCAATCTCTACCCCAGCCTGTTCGTCATCGACCAGATCAGCTCGCAGCTGCGCATCGTCCGC 
CCGCTGGCCTGGAACCGTACCGAGATCGTCAGCCAGTGCATCGGCGTCAAGGGCGAGTCGGACGCCGACCGG 
GAGAACCGGATCCGCCAGTTCGAGGACTTCTTCAACGTCTCCGGGATGGGCACGCCCGACGATCTGGTGGAG 
TTCCGCGAAGCCCAGCGTGGCTTCCAGGCCCGCCTGGAGCGCTGGAGCGACATCTCCCGCGGCCACGGCAAG 
TGGCTCGAAGGCGCGACGCCGAACAGCCAGGCGCTGGGTATCGCGCCGCTGCTGACCGGCACCGAGATCACC 
CACGAAGGCCTCTACGTCAACCAGCACGCGCATTGGCGGCGCTTCCTCCTCGACGGCCTGGAGCGCCTGGCC 
CTGCGCGCGAAGGAGGTGACCCCATGA