ViewGene
Locus Name:
GeneID:
Location:

GeneID:871
TrivialName: PA14_31850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31850
PAO1 Ortholog Locus:PA2529
Sequence Length:1434
Protein Length:477
Start: 2771798
Stop: 2770365
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05917.1|AE004680_5 (AE004680) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 474/476 (99%), Positives = 475/476 (99%)
Sequence:
ATGATCGACCCGTTGAAACACCGCTTCGCGGCGCTCCGCAGCCGCGCCGAATTCCACTCCTTGCGCTACGTC
CAGCGTAGCGGCGAGTACCTCTCGGTGCGCCGCAACGTCAGCGAACCGCCGCACTTCAGCCAGGACCGCGGC
GCCATGCTCTGCGTACGGCTGAACGGCGTGGAAGCCTACGCCGCCACCAACGATCTCTCCGCGGCCGGCCTG
CAGGCCGCCCTGGAGCAGGCCGAGCGGCAAGCCGAGCGGATCGCCCGGCACGCCCTGTTCGACGTCCGCGGA
TTGCCGCCGGCAAGCGGCCGCTCGCAGTATCGCTCGCCGAACCAGGACGCCCCTTTCCCCTCCCTCGCCGAG
TGCTACGAACTGCTCGCCGAGGAGTCCGCCAAGGTGCCGCGCGACGAGCGCCTGGTGAACTGGAGCGTATTC
CTCGAAGTCAGCCGCCAGGAACAGCTCTACCTGAACAGCGCCGGCGCCGAGCAATACCACGAGCAGCGCTTC
GTCTATCCCGGCGCCAGCGTCACCGCCTACGACGGCCATGACAGCCAGACCCGCAGTTTCGGCGGCCACCAT
GCCGGCCAGCAGGGCGGCGCCGAAGTGATCGAGCGCCTCGGCCTGGTCGGCGCCGCGCCGCGCATCGCCGAC
CAGGCCCTGCAACTGCTGGCGGCGccgAACACCCCGAGCGGCCGCTGCGAccTGCTGCTGATGCCGGACCAG
ATGATCCTGCAGATCCACGAGTCGATCGGCCACCCGCTGGAGCTGGATCGCATCCTCGGCGACGAGCGCAAC
TACGCCGGTACCAGCTTCATCAAGACCGAGGACTTCGGTCGCTACCAGTACGGCTCCAGCCTGCTCAACGTC
AGCTTCGACCCGGAAATCCCCGAGGAGCTGGCCAGCTACCGCCAGGACGACGACGGCAGCCTCGCGCGCAAG
GAATACCTGATCCGCGAAGGCCGCCTGCTGCGCCCGCTCGGCGGCGCCCTGTCGCAACACCGCAGCGGCCTG
GAGGGCGTCGCCAACAGCCGCGCCAGCAGTTGGAACCGCGCGCCCATCGACCGCATGGCCAATCTCAACCTG
GAGCCCGGCGACAAGAGCTTCGCGCAGCTGGTGGCCGGTATCGAGCGCGGGGTGCTGATGTCCTACAACCGC
TCCTGGTCGATCGACGACGCACGCAATAAGTTCCAGTTCGGCTGCGAATGGGGCCAGTTGATCGAGGACGGC
GAACTCAAGGGCGTGGTGAAGAACCCCAACTACCGAGGCATCTCCGCGCAGTTCTGGCGCAACCTCAGCGCG
GTGGGCAACGCCGGCACCTTCGAGGTGCTCGGCACGCCCTACTGCGGCAAGGGCGAGCCGAACCAGGTGATC
CGTGTCGGCCATGCCTCGCCGGCCTGCGTATTCAGCGATGTGGACGTATTCGGGGGAGACGCCTGA
Translation:
MIDPLKHRFAALRSRAEFHSLRYVQRSGEYLSVRRNVSEPPHFSQDRGAMLCVRLNGVEAYAATNDLSAAGL
QAALEQAERQAERIARHALFDVRGLPPASGRSQYRSPNQDAPFPSLAECYELLAEESAKVPRDERLVNWSVF
LEVSRQEQLYLNSAGAEQYHEQRFVYPGASVTAYDGHDSQTRSFGGHHAGQQGGAEVIERLGLVGAAPRIAD
QALQLLAAPNTPSGRCDLLLMPDQMILQIHESIGHPLELDRILGDERNYAGTSFIKTEDFGRYQYGSSLLNV
SFDPEIPEELASYRQDDDGSLARKEYLIREGRLLRPLGGALSQHRSGLEGVANSRASSWNRAPIDRMANLNL
EPGDKSFAQLVAGIERGVLMSYNRSWSIDDARNKFQFGCEWGQLIEDGELKGVVKNPNYRGISAQFWRNLSA
VGNAGTFEVLGTPYCGKGEPNQVIRVGHASPACVFSDVDVFGGDA*
AnnotationID:880GeneID:871
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 18:06:05
Gene Name:
Confidence Code:3
GeneProduct:putative protease
Cell Localization:()
Synonyms:PA2529
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0312,pfam01523
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70516.1|AE016693_5 (AE016792) TldD/PmbA family protein [Pseudomonas putida KT2440]
          Length = 512

 Score =  699 bits (1803), Expect = 0.0
 Identities = 351/473 (74%), Positives = 392/473 (82%)

>gb|AAO53953.1| (AE016857) TldD/PmbA family protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 480

 Score =  693 bits (1788), Expect = 0.0
 Identities = 340/473 (71%), Positives = 392/473 (82%)








 
Structural Features:
COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs 
CD-Length = 454 residues,  99.8% aligned
Score =  296 bits (758), Expect = 5e-81
Identities = 153/477 (32%), Positives = 214/477 (44%), Gaps = 26/477 (5%)

pfam01523, PmbA_TldD, Putative modulator of DNA gyrase.
CD-Length = 297 residues,  99.0% aligned
Score =  123 bits (311), Expect = 4e-29
Identities = 84/307 (27%), Positives = 136/307 (44%), Gaps = 15/307 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1745




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18887




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33086




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:871_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:871
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1562
                           PA2529_tr
                           translation of PA2529
                           477
                           99.37
                           99.58
                           0
                           2469.0
     

     
     
56727
                           gb|AAG05917.1|AE004680_5
                           (AE004680) hypothetical protein PA2529 [Pseudomonas aeruginosa PAO1]
                           477
                           99.37
                           99.58
                           0
                           2469.0
     

     
     
56729
                           gb|AAO53953.1|
                           (AE016857) TldD/PmbA family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           480
                           71.25
                           82.08
                           3
                           1786.0
     

     
     
56728
                           gb|AAN70516.1|AE016693_5
                           (AE016792) TldD/PmbA family protein [Pseudomonas putida KT2440]
                           512
                           68.94
                           76.95
                           35
                           1802.0
     

     
     
56730
                           gb|AAQ60367.1|
                           (AE016919) probable tldD protein family [Chromobacterium violaceum ATCC 12472]
                           488
                           60.24
                           71.10
                           13
                           1415.0
     

     






      

          
GC ORFID: 43873How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2529Glimmer Score: 

          
Start: 2182128Stop: 2183561

          
Length: 1434


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2529 translation of PA2529Homolog Bit Score 955.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6830 (ORF: BLASTX 700.0), t_PA2529 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCGACCCGTTGAAACACCGCTTCGCGGCGCTCCGCAGCCGCGCCGAATTCCACTCCTTGCGCTACGTC 
CAGCGTAGCGGCGAGTACCTCTCGGTGCGCCGCAACGTCAGCGAACCGCCGCACTTCAGCCAGGACCGCGGC 
GCCATGCTCTGCGTACGGCTGAACGGCGTGGAAGCCTACGCCGCCACCAACGATCTCTCCGCGGCCGGCCTG 
CAGGCCGCCCTGGAGCAGGCCGAGCGGCAAGCCGAGCGGATCGCCCGGCACGCCCTGTTCGACGTCCGCGGA 
TTGCCGCCGGCAAGCGGCCGCTCGCAGTATCGCTCGCCGAACCAGGACGCCCCTTTCCCCTCCCTCGCCGAG 
TGCTACGAACTGCTCGCCGAGGAGTCCGCCAAGGTGCCGCGCGACGAGCGCCTGGTGAACTGGAGCGTATTC 
CTCGAAGTCAGCCGCCAGGAACAGCTCTACCTGAACAGCGCCGGCGCCGAGCAATACCACGAGCAGCGCTTC 
GTCTATCCCGGCGCCAGCGTCACCGCCTACGACGGCCATGACAGCCAGACCCGCAGTTTCGGCGGCCACCAT 
GCCGGCCAGCAGGGCGGCGCCGAAGTGATCGAGCGCCTCGGCCTGGTCGGCGCCGCGCCGCGCATCGCCGAC 
CAGGCCCTGCAACTGCTGGCGGCGccgAACACCCCGAGCGGCCGCTGCGAccTGCTGCTGATGCCGGACCAG 
ATGATCCTGCAGATCCACGAGTCGATCGGCCACCCGCTGGAGCTGGATCGCATCCTCGGCGACGAGCGCAAC 
TACGCCGGTACCAGCTTCATCAAGACCGAGGACTTCGGTCGCTACCAGTACGGCTCCAGCCTGCTCAACGTC 
AGCTTCGACCCGGAAATCCCCGAGGAGCTGGCCAGCTACCGCCAGGACGACGACGGCAGCCTCGCGCGCAAG 
GAATACCTGATCCGCGAAGGCCGCCTGCTGCGCCCGCTCGGCGGCGCCCTGTCGCAACACCGCAGCGGCCTG 
GAGGGCGTCGCCAACAGCCGCGCCAGCAGTTGGAACCGCGCGCCCATCGACCGCATGGCCAATCTCAACCTG 
GAGCCCGGCGACAAGAGCTTCGCGCAGCTGGTGGCCGGTATCGAGCGCGGGGTGCTGATGTCCTACAACCGC 
TCCTGGTCGATCGACGACGCACGCAATAAGTTCCAGTTCGGCTGCGAATGGGGCCAGTTGATCGAGGACGGC 
GAACTCAAGGGCGTGGTGAAGAACCCCAACTACCGAGGCATCTCCGCGCAGTTCTGGCGCAACCTCAGCGCG 
GTGGGCAACGCCGGCACCTTCGAGGTGCTCGGCACGCCCTACTGCGGCAAGGGCGAGCCGAACCAGGTGATC 
CGTGTCGGCCATGCCTCGCCGGCCTGCGTATTCAGCGATGTGGACGTATTCGGGGGAGACGCCTGA