ViewGene

Locus Name:
GeneID:
Location:

GeneID:870
TrivialName: PA14_55200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55200
PAO1 Ortholog Locus:PA0704
Sequence Length:1395
Protein Length:464
Start: 4902216
Stop: 4903610
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04093.1|AE004506_3 (AE004506) probable amidase [Pseudomonas aeruginosa PAO1]
Identities = 461/464 (99%), Positives = 462/464 (99%)
Sequence:
ATGACCGCGCTGCACGACCTTCCGGGAACCCGCCTGCTGGCACTGTTCGCCCGCCGGGAACTCTCGCCCAGC
GAGTACTACGAGCATCTGCTGGCCCACATCCAGCGCTGGGAACCGCATCTCAACGCGCTGTATCGCTTCGAC
CCGCAACGGATTCGCGAACAGGCCGCGGCGGCCACCGAGCGTTGGCGCAAGGGACAGCCCAAAGGCCCGCTG
GACGGGCTGCCGGTAACCATCAAGGAGCTGATCGCCACCGCTGGCGAACCTATCCCATTGGGCAGCGCCGCC
ACCGCCCTGCAACCCGCGCCCTGCGACGCGCCGCCGGCCGCTCGGCTGCGCGAAGCCGGCGCGATCGTCCTG
GCCAAGACTACGGTTCCAGACTTCGGCATGCTTTCATCCGGCCTCTCCAGCTTCCACGGAGTCACCCGCAAT
CCCTGGAACCTGGCCAACAATACCGGCGGCTCCAGTTCGGGCGCGGCAGCGGCGGCCGCCGCCGGCTACGGA
CCGCTGCACCTGGGCACCGACATCGGCGGCTCGGTGCGACTGCCGGCGGGCTGGTGCGGCCTGGTGGGCTTC
AAGCCAAGCCTCGGGCGGATCCCCATCGACCCTTACTACACCGGTCGCTGCGCCGGTCCGATGACCCGCTGC
ATGGACGACTGCCTGCTGCTGATGCGCTACCTCGCGCAGCCCGACGCCCGCGACGCCACCAGCCTGCCGCCG
GAAGTGCTGGACTGGAGCGCCGAGCCGCTGTCGGTGCGCGGCCTGAGGGTCGGCCTGCAACTCGACCCCGGC
TGCGGCCTGCAGCCCGACGCGGAAATCCGCGCCGCGATCGAGGCCGCGGCGCGGCTGTTCGAGGAGCACGGC
GCCCAGCTCAGGATCGTCGAACCGCTGATGGACCGGAGCCTGCTCGACGGCCTGAACGACTTCTGGCGCGCC
CGCCTGTGGAGCGAACTGCTGCTCCTCGACGAGACGCGGCGGGCCAGGGTGCTGCCCTATGTCCACGCCTGG
GCCGAGGGCGGCGCACGGGTCAGCGGGGTCGATGCGGTGCGCGGTTTCAACCAGACCTTCGAGATGCGCCGG
CGCGCCGCCCGGCTGTTCGGCGAGATCGACCTGCTGCTGACGCCGACCAACCAGGTCGAGGCCTTCCCCGCC
GACTGGGCCTCGCCGCTGAACGATCCGCAGCGGCCGTTCGAGCACATCGTCTTCACCGTGCCGTGGAATATG
GGCGAACAGCCCGCGCTCTCGATAAACTGCGGCTTCACGGCCGCCGGCATGCCGATCGGCCTGCAACTGGTC
GCGCCGCGCTTCGCCGATACCTGGCTGTTGCGCATCGGCAAGACCTACGAAGGCTGGCGCGGTCCGATCCAC
GGCTGGCCACGGCCGCCGGCTGACTGA
Translation:
MTALHDLPGTRLLALFARRELSPSEYYEHLLAHIQRWEPHLNALYRFDPQRIREQAAAATERWRKGQPKGPL
DGLPVTIKELIATAGEPIPLGSAATALQPAPCDAPPAARLREAGAIVLAKTTVPDFGMLSSGLSSFHGVTRN
PWNLANNTGGSSSGAAAAAAAGYGPLHLGTDIGGSVRLPAGWCGLVGFKPSLGRIPIDPYYTGRCAGPMTRC
MDDCLLLMRYLAQPDARDATSLPPEVLDWSAEPLSVRGLRVGLQLDPGCGLQPDAEIRAAIEAAARLFEEHG
AQLRIVEPLMDRSLLDGLNDFWRARLWSELLLLDETRRARVLPYVHAWAEGGARVSGVDAVRGFNQTFEMRR
RAARLFGEIDLLLTPTNQVEAFPADWASPLNDPQRPFEHIVFTVPWNMGEQPALSINCGFTAAGMPIGLQLV
APRFADTWLLRIGKTYEGWRGPIHGWPRPPAD*
AnnotationID:879GeneID:870
AnnotatorUID: danlee
Modification Date/Time: 2004-03-11 17:05:47
Gene Name:
Confidence Code:3
GeneProduct:probable amidase
Cell Localization:()
Synonyms:PA0704
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases.
   CD-Length = 475 residues, 100.0% aligned
   Score =  354 bits (910), Expect = 2e-98
pfam01425, Amidase.
   Score =  253 bits (648), Expect = 7e-68
Genomic Context:
Comment:
ReferenceID:1743
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18885
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:870

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1561 PA0704_tr translation of PA0704 464 99.35 99.56 0 2468.0
56720 gb|AAG04093.1|AE004506_3 (AE004506) probable amidase [Pseudomonas aeruginosa PAO1] 464 99.35 99.56 0 2468.0
56721 gb|AAL45235.1| (AE009373) glutamyl-tRNA amidotransferase subunit A [Agrobacterium tumefaciens str. C58 (U. Washington)] 465 59.35 74.40 1 1515.0
56722 gb|AAK88999.1| (AE008241) AGR_L_854p [Agrobacterium tumefaciens str. C58 (Cereon)] 465 59.35 74.40 1 1515.0
56724 emb|CAE28881.1| (BX572604) probable amidase [Rhodopseudomonas palustris CGA009] 472 57.83 70.76 9 1459.0
GC ORFID: 43872How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0704Glimmer Score:
Start: 51691Stop: 50297
Length: 1395
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0704 translation of PA0704Homolog Bit Score 955.0
Other Homologs: t_PA0704 (ORF: GLIMMER)
GC ORF Sequence
ATGACCGCGCTGCACGACCTTCCGGGAACCCGCCTGCTGGCACTGTTCGCCCGCCGGGAACTCTCGCCCAGC
GAGTACTACGAGCATCTGCTGGCCCACATCCAGCGCTGGGAACCGCATCTCAACGCGCTGTATCGCTTCGAC
CCGCAACGGATTCGCGAACAGGCCGCGGCGGCCACCGAGCGTTGGCGCAAGGGACAGCCCAAAGGCCCGCTG
GACGGGCTGCCGGTAACCATCAAGGAGCTGATCGCCACCGCTGGCGAACCTATCCCATTGGGCAGCGCCGCC
ACCGCCCTGCAACCCGCGCCCTGCGACGCGCCGCCGGCCGCTCGGCTGCGCGAAGCCGGCGCGATCGTCCTG
GCCAAGACTACGGTTCCAGACTTCGGCATGCTTTCATCCGGCCTCTCCAGCTTCCACGGAGTCACCCGCAAT
CCCTGGAACCTGGCCAACAATACCGGCGGCTCCAGTTCGGGCGCGGCAGCGGCGGCCGCCGCCGGCTACGGA
CCGCTGCACCTGGGCACCGACATCGGCGGCTCGGTGCGACTGCCGGCGGGCTGGTGCGGCCTGGTGGGCTTC
AAGCCAAGCCTCGGGCGGATCCCCATCGACCCTTACTACACCGGTCGCTGCGCCGGTCCGATGACCCGCTGC
ATGGACGACTGCCTGCTGCTGATGCGCTACCTCGCGCAGCCCGACGCCCGCGACGCCACCAGCCTGCCGCCG
GAAGTGCTGGACTGGAGCGCCGAGCCGCTGTCGGTGCGCGGCCTGAGGGTCGGCCTGCAACTCGACCCCGGC
TGCGGCCTGCAGCCCGACGCGGAAATCCGCGCCGCGATCGAGGCCGCGGCGCGGCTGTTCGAGGAGCACGGC
GCCCAGCTCAGGATCGTCGAACCGCTGATGGACCGGAGCCTGCTCGACGGCCTGAACGACTTCTGGCGCGCC
CGCCTGTGGAGCGAACTGCTGCTCCTCGACGAGACGCGGCGGGCCAGGGTGCTGCCCTATGTCCACGCCTGG
GCCGAGGGCGGCGCACGGGTCAGCGGGGTCGATGCGGTGCGCGGTTTCAACCAGACCTTCGAGATGCGCCGG
CGCGCCGCCCGGCTGTTCGGCGAGATCGACCTGCTGCTGACGCCGACCAACCAGGTCGAGGCCTTCCCCGCC
GACTGGGCCTCGCCGCTGAACGATCCGCAGCGGCCGTTCGAGCACATCGTCTTCACCGTGCCGTGGAATATG
GGCGAACAGCCCGCGCTCTCGATAAACTGCGGCTTCACGGCCGCCGGCATGCCGATCGGCCTGCAACTGGTC
GCGCCGCGCTTCGCCGATACCTGGCTGTTGCGCATCGGCAAGACCTACGAAGGCTGGCGCGGTCCGATCCAC
GGCTGGCCACGGCCGCCGGCTGACTGA