ViewGene
Locus Name:
GeneID:
Location:

GeneID:87
TrivialName: PA14_69610
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69610
PAO1 Ortholog Locus:PA5272
Sequence Length:2853
Protein Length:950
Start: 6209585
Stop: 6212437
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08657.1|AE004940_1 (AE004940) adenylate cyclase [Pseudomonas aeruginosa PAO1]
Identities = 945/950 (99%), Positives = 946/950 (99%)
Sequence:
ATGAACCGACACCCCGCACTCAGCCTCGATCTCGACGATGGCATCGACCGCAAGGTCCTCGGCCAGTTGCGC
CAACGCTTCCTGGCGGTCAACGCCGGTCGCCTGCAACGCGCCCGACAGGCGTTGTCCAGCCGCCAGGAGCGG
GTCCTGCGCCTGCTACCGCTGCTGTTCCACATCAACCATCCGCTGCTGCCGGGCTACCTGTCGGCCAGCACG
CCGGCGGGCCTGAGCGGTTTCGAGGCGGACGACGAAGTACTCGCCGAAGCCCAGCGCCTGGCACGTTCGTTT
GTCTACAAGCCACGCAGGCAGGAACCCGCACAACAGCCGATCCACGGCCTGTTCCTGATGGGCAGCCTGGGG
AGCCTGGCCCAGGAGGAACAGAGCGATCTCGACCTCTGGGTCTGCCATGCCCCAGAACTGGAGCCCGGCGCG
CGCCAGGAGCTGCGCCGCAAGTGCGCGTTGATCGAGGACTGGGCGCGCAGCCAGGGCAGCGAGGTGCACTGT
TTCCTGATCGACGTCGCCCGCTTCGGCCAGGACGAACGCGAAGACCGGAAGGAGCCCGGCGGCGACGGCAAT
ACCCAGCACTTCCTGCTGCTCGACGAGTTCTACCGCAGCGCGATCTGGCTCGGCGGACGCACCCCTCTGTGG
TGGCTGGTGCCGCCGGCCCATGAACGGCGCTACGACGAATACTGCCGGACCCTGCTCGGCAAACGCTTCATC
CGCGCCGAAGAGGTGCTCGACCTCGGCCACCTGGCGCACATCCCCGCCCGGGAGTTCATCGGCGCCGGCCTC
TGGCAGTTGTCCAAGGCCATCGATTCGCCCTACAAGTCGCTGCTCAAGCTGCTGCTCACCGAGGCCTACGCC
AGCGAGCACCCGCGGGTCCGCTGCGTCGCCCTGCGCTTCAAGGAGCAGGTATTCGCCGGCCAGCTCGATCTC
GACGAACTGGACCCCTACGTCCTGGTCTATCGCCATCTCGAACGCTACCTGCGGGAACAGCAGGCGCCGGAA
CGCCTGGAACTCGTGCGGCGCTGCCTGTACCTCAAGGTCGGGCGCAAGCTCGGCGGTCGCCAGCGCCAGGCG
CAGAAGGGCTGGCAGCACCTGTCGATGGAGCGGCTCGTCGCGGAATGGCAATGGGAGCCTCGCCGCTTGGCC
CTGCTCGACAGCCGCAGCCAGTGGAAGATGCGCCAGGTGATGGAAGAGCGTCGCACGGTGGTCAACGAACTG
ACCTACAGCTACCGCCTGCTGTTCCAGATCGCCCGCCAGCAAGGCGCTGACAGCGGCATCGACAGCCGCGAC
CTGGGCCTGCTCGGCCGCCGCCTGTATGCCGCCTTCGAGCGCAAGGCAGGCAAGGTGGAGAACATCAACCCG
GGGATCGCCCCGGATCTCGGCGAAGACGTCCTGACCCTGGTCCAGCTGCCCGCCGACGACGACCGCGAGCAG
GCGCAGTGGGCGATCTTCCCCGGTGCCCTGGGCGCTCACCAGTGGCCTGACTACGCGCCGCTGAAACGCAGC
CTCAGGCTGGTCGAGCTGCTCGCCTGGTGCCATCGCAACGGCGTCATCGACAGCGCCACCCGGCTGTCCCTG
CATCCCGGCCAGAGCGACCTCGGCGATGCCGAACTGGACAATCTCCTGGGCAGCCTGCGGCAGTTCCTGCCG
GTCCCCCTGGCGACCGTGGACGACGCCGACCTGCTGCAACCGCGTCGGCTCAAGAGCGTCCTGCTGCTGGTC
AACGTCGGTGTCGACCCGCTGCGCCACCACAGCCAGATGAACCTGCACATGGCTACCGGGCGTACCGACGTG
CTCGGTTATGCCGGGGTGCGCGACAACCTGGTGCTGACCCTCGACCAGCTCAGCCTCAACAGCTGGAACGAA
CTGACGGTGCGCCATTACGCAGGCCCTCAGGCGCTGCCCGAGTGCCTTGCCGAGTTCCTCGACGCCGTCCGC
GAAAAGCCCGGAAGCCTGCCGCAGCCGCCCGAACTGATGGTGCGCTGCTTCTGTCGCAACCGGGCCGCCGCC
ATCGCCGTGCGGGTCGAAGAGCTGTTCCGCGAAACCTACGGGCAACTGCTTGGCGGCCAGCCGAGCCGCTAC
CTGCTGCAGATCCGCCAGCAGTACCACCTGCTGGAAATGTCGCCGGAAGCGGTCAGCCACGAGAGCCTGCCC
GACCTGCCGAGCCTGCTCCAGCACCTGGGCCGCGAGCGCGATGGTTACAGCGCCCTGAAGCTGGATCGCCAC
GCCCTGGAAGGCGTGGACCTCGGGCTGATCCTGTCCATGGGGCGGCCGGACTGCATCCAGGTGTTCTACCGG
CGCGACTTCGACAGCGCCGAGATCAGCCTGCTCGACGAACGCAACGCGTTCTGGCGCCAGCGCCAGGCGTTG
CGTGACGAACGCAGCCTGCTCGCACCGCTGCAGCGCTTCCTGCAATCGCTGCTGTACCGGCGCAACGCCCTG
TCGCTGGCGGAACAGGTGCCGGCCTCGCTGGATATCCGCTACTACGAGTTGCTCTCCAACGACGGCAGAGTG
CACGTCGAGCCTCGCGAAGCGCCGGAGGCCCTGGCCGGACCCGCGTTGTACGAGCTACAGGCGCTACTCGAA
CGCGGCGAACGCAAGCGCGTGCAGGTCACCCTGTACTGCGACCACCAGGAGTTTTCCGAACTGGAGTACGGC
GCCGGCCTGTTCAAGGCGGTCGCCCGGCATATCCTGGCGCATCGCGCGGAAAGCGAACCCTACCCCTGCTAC
CTGACCGACCTCGACCTGTCGCGGCTGTTCGCCGACGAACAGCCGCAAACGCTGCACTATCTGCGTTATAAA
AGCGTCCTGGAAACGGCGCTGAACCAGGCGCTGCTGGAACAATGA
Translation:
MNRHPALSLDLDDGIDRKVLGQLRQRFLAVNAGRLQRARQALSSRQERVLRLLPLLFHINHPLLPGYLSAST
PAGLSGFEADDEVLAEAQRLARSFVYKPRRQEPAQQPIHGLFLMGSLGSLAQEEQSDLDLWVCHAPELEPGA
RQELRRKCALIEDWARSQGSEVHCFLIDVARFGQDEREDRKEPGGDGNTQHFLLLDEFYRSAIWLGGRTPLW
WLVPPAHERRYDEYCRTLLGKRFIRAEEVLDLGHLAHIPAREFIGAGLWQLSKAIDSPYKSLLKLLLTEAYA
SEHPRVRCVALRFKEQVFAGQLDLDELDPYVLVYRHLERYLREQQAPERLELVRRCLYLKVGRKLGGRQRQA
QKGWQHLSMERLVAEWQWEPRRLALLDSRSQWKMRQVMEERRTVVNELTYSYRLLFQIARQQGADSGIDSRD
LGLLGRRLYAAFERKAGKVENINPGIAPDLGEDVLTLVQLPADDDREQAQWAIFPGALGAHQWPDYAPLKRS
LRLVELLAWCHRNGVIDSATRLSLHPGQSDLGDAELDNLLGSLRQFLPVPLATVDDADLLQPRRLKSVLLLV
NVGVDPLRHHSQMNLHMATGRTDVLGYAGVRDNLVLTLDQLSLNSWNELTVRHYAGPQALPECLAEFLDAVR
EKPGSLPQPPELMVRCFCRNRAAAIAVRVEELFRETYGQLLGGQPSRYLLQIRQQYHLLEMSPEAVSHESLP
DLPSLLQHLGRERDGYSALKLDRHALEGVDLGLILSMGRPDCIQVFYRRDFDSAEISLLDERNAFWRQRQAL
RDERSLLAPLQRFLQSLLYRRNALSLAEQVPASLDIRYYELLSNDGRVHVEPREAPEALAGPALYELQALLE
RGERKRVQVTLYCDHQEFSELEYGAGLFKAVARHILAHRAESEPYPCYLTDLDLSRLFADEQPQTLHYLRYK
SVLETALNQALLEQ*
AnnotationID:97GeneID:87
AnnotatorUID: diggins
Modification Date/Time: 2005-04-26 14:02:12
Gene Name:cyaA
Confidence Code:2
GeneProduct:adenylate cyclase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:4.6.1.1
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO53776.1| (AE016856) adenylate cyclase, class I [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 948

 Score = 1066 bits (2756), Expect = 0.0
 Identities = 549/954 (57%), Positives = 682/954 (71%), Gaps = 16/954 (1%)

>gb|AAN70787.1|AE016722_8 (AE016793) adenylate cyclase [Pseudomonas putida KT2440]
          Length = 951

 Score = 1043 bits (2696), Expect = 0.0
 Identities = 551/950 (58%), Positives = 665/950 (70%), Gaps = 10/950 (1%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:177




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17319




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35725




  
Author/Investigator(s):
        Betsou F, Sismeiro O, Danchin A, Guiso N.





  
Title:
        Cloning and sequence of the Bordetella bronchiseptica adenylate cyclase-hemolysin-encoding gene: comparison with the Bordetella pertussis gene.




  
PubMed:
        7557410


MedLine:
        




    
Source:
Gene. 1995 Aug 30;162(1):165-6.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7557410









           
Homologs By Global Alignment 

           

       



     
Gene ID:87
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
166
                           PA5272_tr
                           translation of PA5272
                           950
                           99.47
                           99.57
                           0
                           4907.0
     

     
     
14080
                           gb|AAG08657.1|AE004940_1
                           (AE004940) adenylate cyclase [Pseudomonas aeruginosa PAO1]
                           950
                           99.47
                           99.57
                           0
                           4907.0
     

     
     
14081
                           gb|AAO53776.1|
                           (AE016856) adenylate cyclase, class I [Pseudomonas syringae pv. tomato str. DC3000]
                           961
                           57.96
                           71.80
                           24
                           2780.0
     

     
     
14082
                           gb|AAN70787.1|AE016722_8
                           (AE016793) adenylate cyclase [Pseudomonas putida KT2440]
                           961
                           57.85
                           69.71
                           21
                           2715.0
     

     
     
14083
                           gb|AAA50815.1|
                           (M23218) adenylate cyclase [Escherichia coli]
                           957
                           19.01
                           26.75
                           545
                           807.0
     

     






      

          
GC ORFID: 43089How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5272Glimmer Score: 

          
Start: 5473272Stop: 5476124

          
Length: 2853


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5272 translation of PA5272Homolog Bit Score 1894.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3111 (ORF: BLASTX 1063.0), t_PA5272 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCGACACCCCGCACTCAGCCTCGATCTCGACGATGGCATCGACCGCAAGGTCCTCGGCCAGTTGCGC 
CAACGCTTCCTGGCGGTCAACGCCGGTCGCCTGCAACGCGCCCGACAGGCGTTGTCCAGCCGCCAGGAGCGG 
GTCCTGCGCCTGCTACCGCTGCTGTTCCACATCAACCATCCGCTGCTGCCGGGCTACCTGTCGGCCAGCACG 
CCGGCGGGCCTGAGCGGTTTCGAGGCGGACGACGAAGTACTCGCCGAAGCCCAGCGCCTGGCACGTTCGTTT 
GTCTACAAGCCACGCAGGCAGGAACCCGCACAACAGCCGATCCACGGCCTGTTCCTGATGGGCAGCCTGGGG 
AGCCTGGCCCAGGAGGAACAGAGCGATCTCGACCTCTGGGTCTGCCATGCCCCAGAACTGGAGCCCGGCGCG 
CGCCAGGAGCTGCGCCGCAAGTGCGCGTTGATCGAGGACTGGGCGCGCAGCCAGGGCAGCGAGGTGCACTGT 
TTCCTGATCGACGTCGCCCGCTTCGGCCAGGACGAACGCGAAGACCGGAAGGAGCCCGGCGGCGACGGCAAT 
ACCCAGCACTTCCTGCTGCTCGACGAGTTCTACCGCAGCGCGATCTGGCTCGGCGGACGCACCCCTCTGTGG 
TGGCTGGTGCCGCCGGCCCATGAACGGCGCTACGACGAATACTGCCGGACCCTGCTCGGCAAACGCTTCATC 
CGCGCCGAAGAGGTGCTCGACCTCGGCCACCTGGCGCACATCCCCGCCCGGGAGTTCATCGGCGCCGGCCTC 
TGGCAGTTGTCCAAGGCCATCGATTCGCCCTACAAGTCGCTGCTCAAGCTGCTGCTCACCGAGGCCTACGCC 
AGCGAGCACCCGCGGGTCCGCTGCGTCGCCCTGCGCTTCAAGGAGCAGGTATTCGCCGGCCAGCTCGATCTC 
GACGAACTGGACCCCTACGTCCTGGTCTATCGCCATCTCGAACGCTACCTGCGGGAACAGCAGGCGCCGGAA 
CGCCTGGAACTCGTGCGGCGCTGCCTGTACCTCAAGGTCGGGCGCAAGCTCGGCGGTCGCCAGCGCCAGGCG 
CAGAAGGGCTGGCAGCACCTGTCGATGGAGCGGCTCGTCGCGGAATGGCAATGGGAGCCTCGCCGCTTGGCC 
CTGCTCGACAGCCGCAGCCAGTGGAAGATGCGCCAGGTGATGGAAGAGCGTCGCACGGTGGTCAACGAACTG 
ACCTACAGCTACCGCCTGCTGTTCCAGATCGCCCGCCAGCAAGGCGCTGACAGCGGCATCGACAGCCGCGAC 
CTGGGCCTGCTCGGCCGCCGCCTGTATGCCGCCTTCGAGCGCAAGGCAGGCAAGGTGGAGAACATCAACCCG 
GGGATCGCCCCGGATCTCGGCGAAGACGTCCTGACCCTGGTCCAGCTGCCCGCCGACGACGACCGCGAGCAG 
GCGCAGTGGGCGATCTTCCCCGGTGCCCTGGGCGCTCACCAGTGGCCTGACTACGCGCCGCTGAAACGCAGC 
CTCAGGCTGGTCGAGCTGCTCGCCTGGTGCCATCGCAACGGCGTCATCGACAGCGCCACCCGGCTGTCCCTG 
CATCCCGGCCAGAGCGACCTCGGCGATGCCGAACTGGACAATCTCCTGGGCAGCCTGCGGCAGTTCCTGCCG 
GTCCCCCTGGCGACCGTGGACGACGCCGACCTGCTGCAACCGCGTCGGCTCAAGAGCGTCCTGCTGCTGGTC 
AACGTCGGTGTCGACCCGCTGCGCCACCACAGCCAGATGAACCTGCACATGGCTACCGGGCGTACCGACGTG 
CTCGGTTATGCCGGGGTGCGCGACAACCTGGTGCTGACCCTCGACCAGCTCAGCCTCAACAGCTGGAACGAA 
CTGACGGTGCGCCATTACGCAGGCCCTCAGGCGCTGCCCGAGTGCCTTGCCGAGTTCCTCGACGCCGTCCGC 
GAAAAGCCCGGAAGCCTGCCGCAGCCGCCCGAACTGATGGTGCGCTGCTTCTGTCGCAACCGGGCCGCCGCC 
ATCGCCGTGCGGGTCGAAGAGCTGTTCCGCGAAACCTACGGGCAACTGCTTGGCGGCCAGCCGAGCCGCTAC 
CTGCTGCAGATCCGCCAGCAGTACCACCTGCTGGAAATGTCGCCGGAAGCGGTCAGCCACGAGAGCCTGCCC 
GACCTGCCGAGCCTGCTCCAGCACCTGGGCCGCGAGCGCGATGGTTACAGCGCCCTGAAGCTGGATCGCCAC 
GCCCTGGAAGGCGTGGACCTCGGGCTGATCCTGTCCATGGGGCGGCCGGACTGCATCCAGGTGTTCTACCGG 
CGCGACTTCGACAGCGCCGAGATCAGCCTGCTCGACGAACGCAACGCGTTCTGGCGCCAGCGCCAGGCGTTG 
CGTGACGAACGCAGCCTGCTCGCACCGCTGCAGCGCTTCCTGCAATCGCTGCTGTACCGGCGCAACGCCCTG 
TCGCTGGCGGAACAGGTGCCGGCCTCGCTGGATATCCGCTACTACGAGTTGCTCTCCAACGACGGCAGAGTG 
CACGTCGAGCCTCGCGAAGCGCCGGAGGCCCTGGCCGGACCCGCGTTGTACGAGCTACAGGCGCTACTCGAA 
CGCGGCGAACGCAAGCGCGTGCAGGTCACCCTGTACTGCGACCACCAGGAGTTTTCCGAACTGGAGTACGGC 
GCCGGCCTGTTCAAGGCGGTCGCCCGGCATATCCTGGCGCATCGCGCGGAAAGCGAACCCTACCCCTGCTAC 
CTGACCGACCTCGACCTGTCGCGGCTGTTCGCCGACGAACAGCCGCAAACGCTGCACTATCTGCGTTATAAA 
AGCGTCCTGGAAACGGCGCTGAACCAGGCGCTGCTGGAACAATGA