ViewGene
Locus Name:
GeneID:
Location:

GeneID:866
TrivialName: PA14_34540
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34540
PAO1 Ortholog Locus:PA2326
Sequence Length:1410
Protein Length:469
Start: 3069451
Stop: 3070860
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05714.1|AE004658_8 (AE004658) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 469/469 (100%), Positives = 469/469 (100%)
Sequence:
ATGCCGCGCGAAATCCGTCTCAACGCCTTCGAAATGAACTGTGTCGGCCACCAGTCGCCCGGCCTCTGGGCG
CATCCGCGCGACCGCTCCTCGCAGTACAAGGACCTGGAGTACTGGACCGACCTGGCGCGGTTGCTCGAACGC
GGCCGTTTCGACGGACTGTTCATCGCCGACGTGCTGGGCATCTACGATGTGCTCGACGGCAATGGCGACGCG
GCGATCCGCCAGGCCGCCCAGGTACCGGTGAACGACCCGCTGGCGCTGATCACGCCGATGGCCGCGGTGACT
CGCCACCTGGGCTTCGGCCTGACCGCCTCGCTGTCCTTCGAGCATCCCTATCCCTTCGCCCGCCGACTCTCG
ACCCTGGACCACCTGACCAAGGGCCGGATCGGCTGGAACGTAGTGACCTCCTACCTGGAAAGCGGCGCGCGC
AACCTCGGCCAGCAGGCCCAGCTCGACCACGACCGCCGCTACGACTATGCCGACGAATACCTACAGGTGCTC
TACAAGCTCTTCGAAGGCAGTTGGGAGGACGGCGCGGTGCTCCGCGACCGTCGCCGAAGGATCTTCAGCGAC
CCGGGCAAGATCCACGAGATCCGTCATGTCGGCGAGCACTTCCAGGTACCCGGCATCCATCTCTGCGAACCG
TCGCCGCAGCGCACGCCGGTGCTCTACCAGGCCGGCGCGTCGAGTCGTGGCAAGCGCTTCGCCGCCGAGCAC
GCCGAGTGCGTGTTCGTCGCCGCGCCATCGAAGACCGTGCTCAAGCAGGCGGTCGCCGACATCCGCCAGCGC
GTCGCCGAGGCCGGCCGCGATCCGCGCAAGGTACTGGTGTTCAACCTGCAGACGGTGGTGCTGGGCGAAACC
GACGCCAAGGCCAGGGCCAAGTTCGACGAATACCGCGCCTTCGTCAGCTACGAAGGCGCCCTGGCGCTGATC
TCCGGCTGGACCGGGATCGACTTCGGCCAGTATCGGCCGGATCAGGTGCTGCGGCACATCCACACCAATGCG
ATCCAATCGGCGGTGGAAGCGTTTTCCAGCGCCGATCCGACGCGCACCTGGACGGTCCGCGAGCTGGCCGAC
TGGGTCGGTATCGGCGGCTTCGGCCCGCTGTTCGTCGGCAGCCCGGCGACCGTCGCCGACCTGTTGCAGGAG
TGGGTGGAGGACACCGACGTGGATGGCTTCAACCTGGCCTATGCGCTGGCCCACGAAACCTTCAGCGACGTG
GTCGAATTGCTGGTGCCGGAGTTGCAGAAGCGCGGGGTGTACAAGACCGAATATGCGCCGGGGACTCTGCGC
GAGAAGTTGTTCGGCGACGGCCCGCGGCTGCCGGATTCCCATCCGGCGGCCGGCTATCGCGACCTGCGGGCG
CTCTGGGAGAAGGAGGCCGGGCGCAACGCGCTGCCGGCCTGA
Translation:
MPREIRLNAFEMNCVGHQSPGLWAHPRDRSSQYKDLEYWTDLARLLERGRFDGLFIADVLGIYDVLDGNGDA
AIRQAAQVPVNDPLALITPMAAVTRHLGFGLTASLSFEHPYPFARRLSTLDHLTKGRIGWNVVTSYLESGAR
NLGQQAQLDHDRRYDYADEYLQVLYKLFEGSWEDGAVLRDRRRRIFSDPGKIHEIRHVGEHFQVPGIHLCEP
SPQRTPVLYQAGASSRGKRFAAEHAECVFVAAPSKTVLKQAVADIRQRVAEAGRDPRKVLVFNLQTVVLGET
DAKARAKFDEYRAFVSYEGALALISGWTGIDFGQYRPDQVLRHIHTNAIQSAVEAFSSADPTRTWTVRELAD
WVGIGGFGPLFVGSPATVADLLQEWVEDTDVDGFNLAYALAHETFSDVVELLVPELQKRGVYKTEYAPGTLR
EKLFGDGPRLPDSHPAAGYRDLRALWEKEAGRNALPA*
AnnotationID:875GeneID:866
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 13:01:05
Gene Name:
Confidence Code:3
GeneProduct:putative xenobiotic compound monooxygenase, DszA family
Cell Localization:()
Synonyms:PA2326
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative flavin-dependent oxidoreductase
Functional Category Confidence Code:5
COGs:COG2141
Secondary Functional Category(ies):central intermediary metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56476.1| (AE016866) xenobiotic compound monooxygenase, DszA family
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 466

 Score =  801 bits (2068), Expect = 0.0
 Identities = 380/457 (83%), Positives = 416/457 (91%)

>gb|AAN69130.1|AE016546_11 (AE016787) monooxygenase, putative [Pseudomonas putida KT2440]
          Length = 454

 Score =  553 bits (1425), Expect = e-157
 Identities = 260/446 (58%), Positives = 334/446 (74%)

>dbj|BAB98408.1| (AP005277) Coenzyme F420-dependent N5,N10-methylene
           tetrahydromethanopterin reductase and related
           flavin-dependent oxidoreductases [Corynebacterium
           glutamicum ATCC 13032]
          Length = 496

 Score =  527 bits (1358), Expect = e-149
 Identities = 253/450 (56%), Positives = 318/450 (70%)






 
Structural Features:
COG2141, COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin 
reductase and related flavin-dependent oxidoreductases 
[Energy production and conversion]
CD-Length = 336 residues,  99.1% aligned
Score =  171 bits (434), Expect = 1e-43
Identities = 99/403 (24%), Positives = 147/403 (36%), Gaps = 73/403 (18%)








   
Genomic Context:






   
Comment:


















    ReferenceID:1735




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18877




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38062




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:866_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:866
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1555
                           PA2326_tr
                           translation of PA2326
                           469
                           99.99
                           99.99
                           0
                           2470.0
     

     
     
55996
                           gb|AAG05714.1|AE004658_8
                           (AE004658) hypothetical protein PA2326 [Pseudomonas aeruginosa PAO1]
                           469
                           99.99
                           99.99
                           0
                           2470.0
     

     
     
55997
                           gb|AAN68354.1|AE016468_8
                           (AE016784) conserved hypothetical protein [Pseudomonas putida KT2440]
                           469
                           83.15
                           89.97
                           0
                           2085.0
     

     
     
55998
                           gb|AAO56476.1|
                           (AE016866) xenobiotic compound monooxygenase, DszA family [Pseudomonas syringae pv. tomato str. DC3000]
                           469
                           81.23
                           89.12
                           3
                           2066.0
     

     
     
56000
                           gb|AAN69130.1|AE016546_11
                           (AE016787) monooxygenase, putative [Pseudomonas putida KT2440]
                           469
                           55.65
                           71.64
                           15
                           1414.0
     

     






      

          
GC ORFID: 43868How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2326Glimmer Score: 

          
Start: 1884465Stop: 1883056

          
Length: 1410


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2326 translation of PA2326Homolog Bit Score 956.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7332 (ORF: BLASTX 801.0), t_PA2348 (ORF: BLASTX 518.0), psyr_15may02_Scaffold2_revised_gene3830 (ORF: BLASTX 512.0), t_PA2326 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGCGCGAAATCCGTCTCAACGCCTTCGAAATGAACTGTGTCGGCCACCAGTCGCCCGGCCTCTGGGCG 
CATCCGCGCGACCGCTCCTCGCAGTACAAGGACCTGGAGTACTGGACCGACCTGGCGCGGTTGCTCGAACGC 
GGCCGTTTCGACGGACTGTTCATCGCCGACGTGCTGGGCATCTACGATGTGCTCGACGGCAATGGCGACGCG 
GCGATCCGCCAGGCCGCCCAGGTACCGGTGAACGACCCGCTGGCGCTGATCACGCCGATGGCCGCGGTGACT 
CGCCACCTGGGCTTCGGCCTGACCGCCTCGCTGTCCTTCGAGCATCCCTATCCCTTCGCCCGCCGACTCTCG 
ACCCTGGACCACCTGACCAAGGGCCGGATCGGCTGGAACGTAGTGACCTCCTACCTGGAAAGCGGCGCGCGC 
AACCTCGGCCAGCAGGCCCAGCTCGACCACGACCGCCGCTACGACTATGCCGACGAATACCTACAGGTGCTC 
TACAAGCTCTTCGAAGGCAGTTGGGAGGACGGCGCGGTGCTCCGCGACCGTCGCCGAAGGATCTTCAGCGAC 
CCGGGCAAGATCCACGAGATCCGTCATGTCGGCGAGCACTTCCAGGTACCCGGCATCCATCTCTGCGAACCG 
TCGCCGCAGCGCACGCCGGTGCTCTACCAGGCCGGCGCGTCGAGTCGTGGCAAGCGCTTCGCCGCCGAGCAC 
GCCGAGTGCGTGTTCGTCGCCGCGCCATCGAAGACCGTGCTCAAGCAGGCGGTCGCCGACATCCGCCAGCGC 
GTCGCCGAGGCCGGCCGCGATCCGCGCAAGGTACTGGTGTTCAACCTGCAGACGGTGGTGCTGGGCGAAACC 
GACGCCAAGGCCAGGGCCAAGTTCGACGAATACCGCGCCTTCGTCAGCTACGAAGGCGCCCTGGCGCTGATC 
TCCGGCTGGACCGGGATCGACTTCGGCCAGTATCGGCCGGATCAGGTGCTGCGGCACATCCACACCAATGCG 
ATCCAATCGGCGGTGGAAGCGTTTTCCAGCGCCGATCCGACGCGCACCTGGACGGTCCGCGAGCTGGCCGAC 
TGGGTCGGTATCGGCGGCTTCGGCCCGCTGTTCGTCGGCAGCCCGGCGACCGTCGCCGACCTGTTGCAGGAG 
TGGGTGGAGGACACCGACGTGGATGGCTTCAACCTGGCCTATGCGCTGGCCCACGAAACCTTCAGCGACGTG 
GTCGAATTGCTGGTGCCGGAGTTGCAGAAGCGCGGGGTGTACAAGACCGAATATGCGCCGGGGACTCTGCGC 
GAGAAGTTGTTCGGCGACGGCCCGCGGCTGCCGGATTCCCATCCGGCGGCCGGCTATCGCGACCTGCGGGCG 
CTCTGGGAGAAGGAGGCCGGGCGCAACGCGCTGCCGGCCTGA