ViewGene
Locus Name:
GeneID:
Location:

GeneID:863
TrivialName: PA14_44710
AnnotatorUID: danlee
Modification Date/Time:2006-06-02 01:01:41
LocusName:PA14_44710
PAO1 Ortholog Locus:PA1524
Sequence Length:1455
Protein Length:484
Start: 3985489
Stop: 3986943
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04913.1|AE004580_13 (AE004580) xanthine dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 483/484 (99%), Positives = 483/484 (99%)
Sequence:
TTGATCAGGTTCCTGCTCAATCGGGAGATCCGCGTCGAAGAACGCCTGGACCCCAACCTCACCGTCCTCGAC
TACCTACGCCGGCACCTCGGCAAGACCGGCACCAAGGAAGGCTGCGCCTCCGGCGATTGCGGCGCCTGCACC
GTGGTGGTCGGCGAACTGGTCACCGGCGAGGATGGTGCCGAACGCATCCGCTATCGCAGCCTGAACTCCTGC
CTGACCTTCGTTTCCGCCCTTCACGGCAAGCAATTGATCACCGTCGAGGACCTCAAGCACCAGGACCGCCTG
CACGACGTGCAGCAGGCGATGGTCGACTGCCATGGCTCGCAGTGCGGGTTCTGCACGCCGGGCTTCGTCATG
TCGCTGTTCGCCCTGCAGAAGAACAGCGCCGGCGCCGATCCGGCCAAGGCCCACGAGGCGCTCGCCGGCAAC
CTCTGCCGCTGCACCGGCTACCGGCCGATCCTCGACGCCGCCGAGCAGGCCTGCTGCCACAAGCGCACAGAC
CAGTTCGACGCCCGGGAAGCCGCCACCATCGAGCAATTGCGCGCCATCGCTCCGCGCGAAACCGCCGAGCTG
AACAGCGGTGACCGGCGCTGCCTGCTGCCGCTCACCGTCGCCGACCTGGCCGACCTCTACGGCGCCAATCCG
CAGGCACGCCTGCTGGCCGGCGGCACCGACCTGGCGCTGGAGGTCACCCAGTTCCATCGCGAACTGCCGGTG
ATGATCTATGTCGGCCACATCCGCGAAATGAAACGCATCGAAGTGGGCGCCAACTGCCTGGAAATCGGCGCC
GCCACCCCGCTGACCGACTGCTACCAGGCGCTGGCCGCGGACTACCCGGACTTCGGCGAGTTGCTGCAGCGT
TTCGCGTCCCTGCAGATCCGCAACCAGGGCACCCTCGGCGGCAATATCGGCAACGCCTCGCCGATCGGCGAC
GCCCCGCCGCTGCTGATCGCCCTCGGCGCGAAGATCGTCCTGCGCCGCGGCGAACGGCGCCGCGAGCTGCCG
CTGGAGGAGTACTTCCTCGACTACAAGGTCACCGCCCGCGAAGAAGGCGAGTTCATCGAGAAGATCCTCGTC
CCGCGTGCCCGGCCCAGCCAGGCGTTCAAGGCCTACAAGGTCTCCAAGCGCATCGACGACGATATTTCCGCG
GTCTGCGCCGCCATCAGCCTCGACCTGGAAGATGGCCGGATCGCCCGCGCCAGGGTCGCCTTCGGCGGCATG
GCGGCGATTCCCAAGCGCGCCGCCGCCTGCGAAGCGGCGCTGCAAGGCGCGCGCCTGGAAGCCGCCAGCTTC
GAACGCGCCGCGGCCGCCCTGGCGAACGACTTCACCCCGCTCAGCGACTTCCGCGCGAGCAAGGAATATCGC
CTGCTGACCGCGCAGAACCTGCTGCGCAAATGCTTCCTGGAGCTGCACGCTCCCGCCGTCGAAACCCGGGTG
ACCGCCTATGTCTAA
Translation:
MIRFLLNREIRVEERLDPNLTVLDYLRRHLGKTGTKEGCASGDCGACTVVVGELVTGEDGAERIRYRSLNSC
LTFVSALHGKQLITVEDLKHQDRLHDVQQAMVDCHGSQCGFCTPGFVMSLFALQKNSAGADPAKAHEALAGN
LCRCTGYRPILDAAEQACCHKRTDQFDAREAATIEQLRAIAPRETAELNSGDRRCLLPLTVADLADLYGANP
QARLLAGGTDLALEVTQFHRELPVMIYVGHIREMKRIEVGANCLEIGAATPLTDCYQALAADYPDFGELLQR
FASLQIRNQGTLGGNIGNASPIGDAPPLLIALGAKIVLRRGERRRELPLEEYFLDYKVTAREEGEFIEKILV
PRARPSQAFKAYKVSKRIDDDISAVCAAISLDLEDGRIARARVAFGGMAAIPKRAAACEAALQGARLEAASF
ERAAAALANDFTPLSDFRASKEYRLLTAQNLLRKCFLELHAPAVETRVTAYV*
AnnotationID:872GeneID:863
AnnotatorUID: danlee
Modification Date/Time: 2005-07-28 15:03:25
Gene Name:xdhA
Confidence Code:2
GeneProduct:xanthine dehydrogenase
Cell Localization:(1) Cytoplasmic
Synonyms:
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4630, KOG0430
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14245




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17017




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI - Conserved Domain Search.






    
Reference Type:Blast (text/plain)







    
Data:PA1524_CDS.cgi


    		




 
URL:

















    ReferenceID:18871




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:863
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1551
                           PA1524_tr
                           translation of PA1524
                           484
                           99.79
                           99.79
                           0
                           2476.0
     

     
     
55913
                           gb|AAG04913.1|AE004580_13
                           (AE004580) xanthine dehydrogenase [Pseudomonas aeruginosa PAO1]
                           484
                           99.58
                           99.79
                           0
                           2474.0
     

     
     
55914
                           gb|AAN69858.1|AE016625_1
                           (AE016790) xanthine dehydrogenase, XdhA subunit [Pseudomonas putida KT2440]
                           484
                           74.79
                           86.36
                           0
                           1906.0
     

     
     
55915
                           gb|AAO57129.1|
                           (AE016869) xanthine dehydrogenase, N-terminal subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           484
                           74.17
                           84.91
                           0
                           1865.0
     

     
     
55920
                           emb|CAD15802.1|
                           (AL646068) PUTATIVE XANTHINE DEHYDROGENASE (SUBUNIT A) OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum]
                           523
                           45.50
                           59.65
                           46
                           1071.0
     

     






      

          
GC ORFID: 43865How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1524Glimmer Score: 

          
Start: 968420Stop: 966966

          
Length: 1455


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1524 translation of PA1524Homolog Bit Score 958.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene582 (ORF: BLASTX 723.0), t_PA1524 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGATCAGGTTCCTGCTCAATCGGGAGATCCGCGTCGAAGAACGCCTGGACCCCAACCTCACCGTCCTCGAC 
TACCTACGCCGGCACCTCGGCAAGACCGGCACCAAGGAAGGCTGCGCCTCCGGCGATTGCGGCGCCTGCACC 
GTGGTGGTCGGCGAACTGGTCACCGGCGAGGATGGTGCCGAACGCATCCGCTATCGCAGCCTGAACTCCTGC 
CTGACCTTCGTTTCCGCCCTTCACGGCAAGCAATTGATCACCGTCGAGGACCTCAAGCACCAGGACCGCCTG 
CACGACGTGCAGCAGGCGATGGTCGACTGCCATGGCTCGCAGTGCGGGTTCTGCACGCCGGGCTTCGTCATG 
TCGCTGTTCGCCCTGCAGAAGAACAGCGCCGGCGCCGATCCGGCCAAGGCCCACGAGGCGCTCGCCGGCAAC 
CTCTGCCGCTGCACCGGCTACCGGCCGATCCTCGACGCCGCCGAGCAGGCCTGCTGCCACAAGCGCACAGAC 
CAGTTCGACGCCCGGGAAGCCGCCACCATCGAGCAATTGCGCGCCATCGCTCCGCGCGAAACCGCCGAGCTG 
AACAGCGGTGACCGGCGCTGCCTGCTGCCGCTCACCGTCGCCGACCTGGCCGACCTCTACGGCGCCAATCCG 
CAGGCACGCCTGCTGGCCGGCGGCACCGACCTGGCGCTGGAGGTCACCCAGTTCCATCGCGAACTGCCGGTG 
ATGATCTATGTCGGCCACATCCGCGAAATGAAACGCATCGAAGTGGGCGCCAACTGCCTGGAAATCGGCGCC 
GCCACCCCGCTGACCGACTGCTACCAGGCGCTGGCCGCGGACTACCCGGACTTCGGCGAGTTGCTGCAGCGT 
TTCGCGTCCCTGCAGATCCGCAACCAGGGCACCCTCGGCGGCAATATCGGCAACGCCTCGCCGATCGGCGAC 
GCCCCGCCGCTGCTGATCGCCCTCGGCGCGAAGATCGTCCTGCGCCGCGGCGAACGGCGCCGCGAGCTGCCG 
CTGGAGGAGTACTTCCTCGACTACAAGGTCACCGCCCGCGAAGAAGGCGAGTTCATCGAGAAGATCCTCGTC 
CCGCGTGCCCGGCCCAGCCAGGCGTTCAAGGCCTACAAGGTCTCCAAGCGCATCGACGACGATATTTCCGCG 
GTCTGCGCCGCCATCAGCCTCGACCTGGAAGATGGCCGGATCGCCCGCGCCAGGGTCGCCTTCGGCGGCATG 
GCGGCGATTCCCAAGCGCGCCGCCGCCTGCGAAGCGGCGCTGCAAGGCGCGCGCCTGGAAGCCGCCAGCTTC 
GAACGCGCCGCGGCCGCCCTGGCGAACGACTTCACCCCGCTCAGCGACTTCCGCGCGAGCAAGGAATATCGC 
CTGCTGACCGCGCAGAACCTGCTGCGCAAATGCTTCCTGGAGCTGCACGCTCCCGCCGTCGAAACCCGGGTG 
ACCGCCTATGTCTAA