ViewGene

Locus Name:
GeneID:
Location:

GeneID:861
TrivialName: PA14_55980
AnnotatorUID: danlee
Modification Date/Time:2006-06-02 14:02:43
LocusName:PA14_55980
PAO1 Ortholog Locus:PA4308
Sequence Length:1491
Protein Length:496
Start: 4998302
Stop: 4996812
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07696.1|AE004847_3 (AE004847) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 491/496 (98%), Positives = 494/496 (99%)
Sequence:
ATGTCGCAAGCGAATGAGTTGTTGATCGGCGCTGGCCCCGATGGCCAGCCGGTAGGGCAGGCCTGGCGCCTG
GCCAACCGTCATGGATTGATCGCCGGCGCCACCGGTACCGGCAAGACGGTGACCTTGCAGCACCTCGCCGAA
TCCTTCAGCGATGCCGGTGTCGCGGTGTTCGCCGCCGACATCAAGGGCGACCTGTGCGGCATCGCCGCGCCG
GGCAACCCGCAGGGCAAGGTCGCCGAACGCATCGCCAGCATGCCGTGGCTGAACTACCAGCCGAAGGCCTAC
CCGACCACGCTCTGGGACATCGCCGGGAAGACCGGCCACCCGTTGCGCACCACCATCAGCGAGATGGGCCCG
CTGCTGCTGGCCAACCTCCTGGAGTTGACCGATAGCCAGCAGGCCGCGCTGTTCGCCGCCTTCCAGGTGGCC
GACCGGGAAGgccTGCTGCTGCTcgaCCTGAAGGACCTGAAGGCGCTGCTCAACCACCTGAAGGACAATCCG
GAGATCCTcggcaaGGACCGGGCGCTGTTCACCGGCGCTTCCGGGCAGGCGCTGCTGCGCCGCCTGGCCACT
CTGGAGCAGCAGGGCGCcgaGGCCTTCTTCGGCGAGCCTGCCCTGCAACTGGAAGACATCCTCCGCCCCGAG
CCGGACGGGCGGGGGCGCATCCACCTGCTCGACGCCAGCCGCCTGGTGCACGAGGCGCCGAAGGTCTACGCG
ACTTTCCTGCTCTGGCTGCTGGCCGAGCTGTTCGAGCAACTGCCGGAGCGCGGCGATGCCGACAAGCCGGTG
CTGGCACTGTTCTTCGACGAGGCCCACCTGCTGTTCAACGGCACGCCGAAAGCCTTGCGCGACCGCCTGGAA
CAGGTGGTCCGGCTGATCCGCTCGAAAGGCGTCGGGGTGTACTTCGTCACCCAGTCGCCGGGCGACCTGCCG
GACGATGTCCTGGCCCAGCTCGGCCTGCGTATCCAGCATGGCCTGCGCGCCTTCACCGCCAAGGAACAGAAA
TCGCTGCGCGCGGTGGCCGACGGTTTCCGCCCGAACCCGGCGTTCGACACCCTGGGGGTGCTGACCGAACTG
GGTATCGGCGAGGCGCTGGTCGGCACCCTGGAGGAAAAGGGCACGCCGGCCATGGTCCAGCGCGTCGCGGTG
GCGCCGCCCTATTCGCGGATCGGCCCGCTGAGCGACAGCGAACGCGCCGAACTGGTCCAGCGGTCGCCGTTG
AAGGGGCGCTACGACCAGCCGATCGATCGCGAGTCGGCCTACGAGGTGCTGGCGAGCAAGGCGGACGCCAAG
CCCGAGGTGCAGGGCCAGGCGCCTGCACAGCAGGAAAGCGCGTCCGGCGTCGGCGGCATGGCCGGGCAGATT
CTCGGCAGCCTGCTGTCCAATTCGACGGTGAAGAGCGCCATGCGCCAGGCGGCCAACCAGTTGAGCCGGGAG
CTGGTGCGTGGCCTGCTCGGCTCGTTGATGGGCGGGAAGAAGCGGCGCTGA
Translation:
MSQANELLIGAGPDGQPVGQAWRLANRHGLIAGATGTGKTVTLQHLAESFSDAGVAVFAADIKGDLCGIAAP
GNPQGKVAERIASMPWLNYQPKAYPTTLWDIAGKTGHPLRTTISEMGPLLLANLLELTDSQQAALFAAFQVA
DREGLLLLDLKDLKALLNHLKDNPEILGKDRALFTGASGQALLRRLATLEQQGAEAFFGEPALQLEDILRPE
PDGRGRIHLLDASRLVHEAPKVYATFLLWLLAELFEQLPERGDADKPVLALFFDEAHLLFNGTPKALRDRLE
QVVRLIRSKGVGVYFVTQSPGDLPDDVLAQLGLRIQHGLRAFTAKEQKSLRAVADGFRPNPAFDTLGVLTEL
GIGEALVGTLEEKGTPAMVQRVAVAPPYSRIGPLSDSERAELVQRSPLKGRYDQPIDRESAYEVLASKADAK
PEVQGQAPAQQESASGVGGMAGQILGSLLSNSTVKSAMRQAANQLSRELVRGLLGSLMGGKKRR*
AnnotationID:870GeneID:861
AnnotatorUID: danlee
Modification Date/Time: 2006-06-02 14:02:09
Gene Name:PA4308
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:yjgR
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam05872
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|9950531|gb|AAG07696.1|  conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|15599504|ref|NP_252998.1|  hypothetical protein PA4308 [Pseudomonas aeruginosa PAO1]
Length=496

 Score =  862 bits (2228),  Expect = 0.0
 Identities = 491/496 (98%), Positives = 494/496 (99%), Gaps = 0/496 (0%)

gi|94413972|ref|ZP_01293841.1|  hypothetical protein PaerP_01004242 [Pseudomonas aeruginosa PA7]
Length=496

 Score =  862 bits (2227),  Expect = 0.0
 Identities = 491/496 (98%), Positives = 493/496 (99%), Gaps = 0/496 (0%)

gi|84316854|ref|ZP_00965313.1|  COG0433: Predicted ATPase [Pseudomonas aeruginosa C3719]
Length=496

 Score =  861 bits (2225),  Expect = 0.0
 Identities = 490/496 (98%), Positives = 494/496 (99%), Gaps = 0/496 (0%)

Structural Features:
pfam05872, DUF853, Bacterial protein of unknown function (DUF853).
CD Length: 505,  Pct. Aligned: 100,  Bit Score: 623.849826,  E-value: 1e-179

COG0433, Predicted ATPase [General function prediction only].
CD Length: 520,  Pct. Aligned: 100,  Bit Score: 115.074132,  E-value: 2e-26
Genomic Context:
Comment:
ReferenceID:1725
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18867
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36670
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:861_cdd.html
URL:
Homologs By Global Alignment
Gene ID:861

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1549 PA4308_tr translation of PA4308 496 98.99 99.59 0 2479.0
55816 gb|AAG07696.1|AE004847_3 (AE004847) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 496 98.99 99.59 0 2479.0
55817 gb|AAN66995.1|AE016327_10 (AE016779) conserved hypothetical protein [Pseudomonas putida KT2440] 496 80.64 88.50 5 2027.0
55818 gb|AAK22077.1| (AE005683) conserved hypothetical protein [Caulobacter crescentus CB15] 522 52.29 66.09 32 1306.0
55820 gb|AAN29494.1|AE014364_11 (AE014364) conserved hypothetical protein [Brucella suis 1330] 516 51.93 67.24 33 1271.0
GC ORFID: 43863How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4308Glimmer Score:
Start: 4261978Stop: 4260488
Length: 1491
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4308 translation of PA4308Homolog Bit Score 959.0
Other Homologs: t_PA4308 (ORF: GLIMMER)
GC ORF Sequence
ATGTCGCAAGCGAATGAGTTGTTGATCGGCGCTGGCCCCGATGGCCAGCCGGTAGGGCAGGCCTGGCGCCTG
GCCAACCGTCATGGATTGATCGCCGGCGCCACCGGTACCGGCAAGACGGTGACCTTGCAGCACCTCGCCGAA
TCCTTCAGCGATGCCGGTGTCGCGGTGTTCGCCGCCGACATCAAGGGCGACCTGTGCGGCATCGCCGCGCCG
GGCAACCCGCAGGGCAAGGTCGCCGAACGCATCGCCAGCATGCCGTGGCTGAACTACCAGCCGAAGGCCTAC
CCGACCACGCTCTGGGACATCGCCGGGAAGACCGGCCACCCGTTGCGCACCACCATCAGCGAGATGGGCCCG
CTGCTGCTGGCCAACCTCCTGGAGTTGACCGATAGCCAGCAGGCCGCGCTGTTCGCCGCCTTCCAGGTGGCC
GACCGGGAAGgccTGCTGCTGCTcgaCCTGAAGGACCTGAAGGCGCTGCTCAACCACCTGAAGGACAATCCG
GAGATCCTcggcaaGGACCGGGCGCTGTTCACCGGCGCTTCCGGGCAGGCGCTGCTGCGCCGCCTGGCCACT
CTGGAGCAGCAGGGCGCcgaGGCCTTCTTCGGCGAGCCTGCCCTGCAACTGGAAGACATCCTCCGCCCCGAG
CCGGACGGGCGGGGGCGCATCCACCTGCTCGACGCCAGCCGCCTGGTGCACGAGGCGCCGAAGGTCTACGCG
ACTTTCCTGCTCTGGCTGCTGGCCGAGCTGTTCGAGCAACTGCCGGAGCGCGGCGATGCCGACAAGCCGGTG
CTGGCACTGTTCTTCGACGAGGCCCACCTGCTGTTCAACGGCACGCCGAAAGCCTTGCGCGACCGCCTGGAA
CAGGTGGTCCGGCTGATCCGCTCGAAAGGCGTCGGGGTGTACTTCGTCACCCAGTCGCCGGGCGACCTGCCG
GACGATGTCCTGGCCCAGCTCGGCCTGCGTATCCAGCATGGCCTGCGCGCCTTCACCGCCAAGGAACAGAAA
TCGCTGCGCGCGGTGGCCGACGGTTTCCGCCCGAACCCGGCGTTCGACACCCTGGGGGTGCTGACCGAACTG
GGTATCGGCGAGGCGCTGGTCGGCACCCTGGAGGAAAAGGGCACGCCGGCCATGGTCCAGCGCGTCGCGGTG
GCGCCGCCCTATTCGCGGATCGGCCCGCTGAGCGACAGCGAACGCGCCGAACTGGTCCAGCGGTCGCCGTTG
AAGGGGCGCTACGACCAGCCGATCGATCGCGAGTCGGCCTACGAGGTGCTGGCGAGCAAGGCGGACGCCAAG
CCCGAGGTGCAGGGCCAGGCGCCTGCACAGCAGGAAAGCGCGTCCGGCGTCGGCGGCATGGCCGGGCAGATT
CTCGGCAGCCTGCTGTCCAATTCGACGGTGAAGAGCGCCATGCGCCAGGCGGCCAACCAGTTGAGCCGGGAG
CTGGTGCGTGGCCTGCTCGGCTCGTTGATGGGCGGGAAGAAGCGGCGCTGA