ViewGene

Locus Name:
GeneID:
Location:

GeneID:86
TrivialName: PA14_24480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24480
PAO1 Ortholog Locus:PA3064
Sequence Length:2847
Protein Length:948
Start: 2135468
Stop: 2138314
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06452.1|AE004730_16 (AE004730) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 939/948 (99%), Positives = 941/948 (99%)
Sequence:
ATGCGGTTCAGCAAGAAAGGAATCGCCGTGCTGCGTCTGCCGTCCTGCCGTAACACCCTTCGACCCATCGAA
CGCCCGCTCGCCTGGCTTGCCGGCCTGGCGCTGGCGCTTTGTGCCGGCGCTGCCGCAGGGGCTGCCGGCGGG
CCGTCCAGCGTGGCGTTCTGGTACGCCGAGCGGCCGCCGCTGGCCGAGCTTTCCCAGTTCGACTGGGTGGTG
CTCGAAGCGGCGCACCTCAAGCCGGCCGATGTCGGGTATCTGAAAGAGCAGGGCAGCACGCCCTTCGCCTAT
CTGTCGGTCGGCGAGTTCGACGGCGACGCCGCCGCCATCGCCGATAGCGGCCTGGCCCGGGGCAAGAGCGCG
GTCCGCAACCAAGCCTGGAACAGCCAGGTAATGGACCTCGCCGCGCCGAGTTGGCGGGCGCACCTGCTCAAG
CGCGCCGCGGAGCTGCGCAAACAGGGCTACGCCGGCCTGTTCCTCGATACCCTGGACAGCTTCCAGCTACAG
GCCGAGGAGCGCCGCGAGGGCCAGCGCCGGGCGCTGGCCAGTTTCCTCGCCCAGCTGCATCGCCAGGAGCCG
GGCCTCAAGCTGTTTTTCAATCGCGGTTTCGAAGTGCTGCCGGAGTTGCCCGGCGTCGCGTCGGCGGTGGCC
GTGGAGTCGATCCATGCCGGTTGGGACGCCGCTGCCGGGCAATACCGCGAGGTGCCCCAGGACGATCGCGAT
TGGCTGAAGGGTCACCTGGATGCCCTGCGCGCCCAGGGCATGCCCATCGTCGCCATCGACTACCTGCCGCCG
GAGCGGCGCGACGAGGCGCGCGCGCTCGCTGCGCGCCTGCGTAGCGAAGGCTACGTGCCGTTCGTCAGCACC
CCGGCGCTGGACTACCTGGGGGTGAGCGACGTCGAGGTGCAACCGCGGCGCATCGCGCTGCTCTACGATCCG
CGCGAGGGCGACCTGACCCTGAGCCCCGGCCACGTCTACCTCGGCGGCCTGCTCGAATACCTCGGTTATCGG
GTCGACTACCTGCCCACCGACCAGCCGCTGCCCGAACGTCCGCTGAGCGGTCTCTACGCCGGGGTGGTGACC
TGGATGACCAGTGGACCGCCGCTGGCCAGCGACGCCTTCGACAACTGGGTCGCTGCGCGTCTCGACGAAAAG
GTGCCGGTGGCGTTCCTCGCCGGCCTGCCTACCGAGAACGACGGTCTGTTGCAGCGCCTGGGGATTCGCCGA
CTGTCGCAGAAACTCAAGGTCAAGCCGAGCACCGAGACCCACGACCAGGCGCTGCTGGGCGCCTTCGAGGCG
CCGCTGGTGATCCGGATCCGCGACCTGCCGGCGCTCACCGTACTCGACCCGGCGCGGGTGGCCCCGGCGCTC
AAGCTCAAGGGCGACGGCAAGGAGTACGTGCCGGTGGCGACCGCCGACTGGGGCGGCTTCGCCCTGGCGCCC
TATGTGCTGGAGGAGGGTAGCGAGCACCGGCGCTGGATCCTCGATCCGTTCGCCTTCCTGCGCAAGGCCTTG
CGTCTTGTGCCGCTGCCGAGTCCCGACGCGACCACCGAGAATGGCCGGCGCATCGCCACCGTGCACATCGAT
GGCGACGGCTTCGTCTCCCGTGCCGAGGTGCCCGGCAGTCCCTATGCCGGCCAGCAGGTGCTGGAGGACTTC
ATCAAGCCCTATCCGTTCCTCACCTCGGTCTCGGTGATCGAAGGCGAGGTCGGGCCGAAGGGCATGTACCCG
CACCTGGCCAGGGAGCTGGAGCCGATCGCCCGGCGCATCTTCGCCGACGACAAGGTCGAGGTCGCCAGCCAT
ACCTTCAGCCATCCGTTCTTCTGGCAGCCGCAACTGGCCGAGCAGGGCGAGAACTTCGAGGCCCAGTATGGC
TACAAGATGGCCATCCCGGGCTACGACAAGGTCGACTTCGTACGCGAGGTGATCGGGGCCCGCGACTACATC
GAGCAGCGCCTGACCACCCCGCGGAAGCCGGTGAAGATGATCTTCTGGTCCGGCGACGCGCTGCCCGACACC
GCCACCATCAAGCTCGCCTACGACGCCGGGCTGATGAACGTCAACGGCGGCAATACCGCGCTGACCCGGGCC
TTTCCCTCGCTGACCGGACTCTACCCGCTGATCCGGCCCACCCGCGGCGGCGTGCAGTACTACGCGCCGATC
ATCAACGAGAACGTCTACACCAATCTCTGGCAGGGGCCGTACTACGGCTTCCGCGGCGTCATCGATACCTTC
GCCCTGACCGACAGCCCGCGCCGCCTGCGCGGCCTGCACCTGTACTACCACTTCTATTCGGGGACCAAGCAG
GCCTCGATCCGCACCATGCACCAGATCTACGCGGCGATGCAGGCGGAGCATCCGTTGTCGCTGTGGATGAGC
GACTACATCCCGCGCCTGGAAGGCCTGCATCGCGCCAGCCTGGCCAAGCGTGCCGATGGCAGCTGGCAGTTG
CGCGGCTTCGCCGCCTTGCGCACGGTGCGCCTGGACCCGGCGCTGGGTTGGCCGGACCTCGCTCGCTCCACG
GGAGTCGCGGGCGTGCGCGACCTGCCCCAGGGGCGCTATGTACACCTGAGTGCGGCGAATGCGCGCCTGGTC
CTGCGCGACAGCCGCGATCCGCGGCCGGCGCTGGAGGAGGCCAACCTGCCGCTGAAGCACTGGCGCTACCGC
GACGATGGCCGCGTCGAGTTCGCCTTCGCCGGGCACCTGCCATTGCGCCTGGTGGTGCGCGCGGCGGGCGAT
TGCCGGCTGAGCGCGGCCGGCAAGGCCTTCCCGGGAAAGGCCGGCAACGGCCTGTGGACGTTCGAGTTGCCG
ATGGAGCAGGTGCGCGATGGCCAACTCGTCTGCCGCTGA
Translation:
MRFSKKGIAVLRLPSCRNTLRPIERPLAWLAGLALALCAGAAAGAAGGPSSVAFWYAERPPLAELSQFDWVV
LEAAHLKPADVGYLKEQGSTPFAYLSVGEFDGDAAAIADSGLARGKSAVRNQAWNSQVMDLAAPSWRAHLLK
RAAELRKQGYAGLFLDTLDSFQLQAEERREGQRRALASFLAQLHRQEPGLKLFFNRGFEVLPELPGVASAVA
VESIHAGWDAAAGQYREVPQDDRDWLKGHLDALRAQGMPIVAIDYLPPERRDEARALAARLRSEGYVPFVST
PALDYLGVSDVEVQPRRIALLYDPREGDLTLSPGHVYLGGLLEYLGYRVDYLPTDQPLPERPLSGLYAGVVT
WMTSGPPLASDAFDNWVAARLDEKVPVAFLAGLPTENDGLLQRLGIRRLSQKLKVKPSTETHDQALLGAFEA
PLVIRIRDLPALTVLDPARVAPALKLKGDGKEYVPVATADWGGFALAPYVLEEGSEHRRWILDPFAFLRKAL
RLVPLPSPDATTENGRRIATVHIDGDGFVSRAEVPGSPYAGQQVLEDFIKPYPFLTSVSVIEGEVGPKGMYP
HLARELEPIARRIFADDKVEVASHTFSHPFFWQPQLAEQGENFEAQYGYKMAIPGYDKVDFVREVIGARDYI
EQRLTTPRKPVKMIFWSGDALPDTATIKLAYDAGLMNVNGGNTALTRAFPSLTGLYPLIRPTRGGVQYYAPI
INENVYTNLWQGPYYGFRGVIDTFALTDSPRRLRGLHLYYHFYSGTKQASIRTMHQIYAAMQAEHPLSLWMS
DYIPRLEGLHRASLAKRADGSWQLRGFAALRTVRLDPALGWPDLARSTGVAGVRDLPQGRYVHLSAANARLV
LRDSRDPRPALEEANLPLKHWRYRDDGRVEFAFAGHLPLRLVVRAAGDCRLSAAGKAFPGKAGNGLWTFELP
MEQVRDGQLVCR*
AnnotationID:96GeneID:86
AnnotatorUID: danlee
Modification Date/Time: 2006-02-02 12:12:49
Gene Name:pelA
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3064
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAD15983.1| (AL646069) PUTATIVE SIGNAL PEPTIDE PROTEIN [Ralstonia solanacearum]
          Length = 948

 Score =  555 bits (1430), Expect = e-157
 Identities = 347/908 (38%), Positives = 500/908 (55%), Gaps = 43/908 (4%)

Structural Features:
Genomic Context:
Part of pelABCDEFG cluster involved in biofilm matrix formation in P. aeruginosa PA14 and ZK2870
Comment:
ReferenceID:175
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17317
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32445
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:86_cdd.html
URL:
Homologs By Global Alignment
Gene ID:86

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
165 PA3064_tr translation of PA3064 948 99.05 99.26 0 4920.0
14079 gb|AAG06452.1|AE004730_16 (AE004730) hypothetical protein PA3064 [Pseudomonas aeruginosa PAO1] 948 99.05 99.26 0 4920.0
GC ORFID: 43088How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3064Glimmer Score:
Start: 2818461Stop: 2815615
Length: 2847
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3064 translation of PA3064Homolog Bit Score 1899.0
Other Homologs: t_PA3064 (ORF: GLIMMER)
GC ORF Sequence
ATGCGGTTCAGCAAGAAAGGAATCGCCGTGCTGCGTCTGCCGTCCTGCCGTAACACCCTTCGACCCATCGAA
CGCCCGCTCGCCTGGCTTGCCGGCCTGGCGCTGGCGCTTTGTGCCGGCGCTGCCGCAGGGGCTGCCGGCGGG
CCGTCCAGCGTGGCGTTCTGGTACGCCGAGCGGCCGCCGCTGGCCGAGCTTTCCCAGTTCGACTGGGTGGTG
CTCGAAGCGGCGCACCTCAAGCCGGCCGATGTCGGGTATCTGAAAGAGCAGGGCAGCACGCCCTTCGCCTAT
CTGTCGGTCGGCGAGTTCGACGGCGACGCCGCCGCCATCGCCGATAGCGGCCTGGCCCGGGGCAAGAGCGCG
GTCCGCAACCAAGCCTGGAACAGCCAGGTAATGGACCTCGCCGCGCCGAGTTGGCGGGCGCACCTGCTCAAG
CGCGCCGCGGAGCTGCGCAAACAGGGCTACGCCGGCCTGTTCCTCGATACCCTGGACAGCTTCCAGCTACAG
GCCGAGGAGCGCCGCGAGGGCCAGCGCCGGGCGCTGGCCAGTTTCCTCGCCCAGCTGCATCGCCAGGAGCCG
GGCCTCAAGCTGTTTTTCAATCGCGGTTTCGAAGTGCTGCCGGAGTTGCCCGGCGTCGCGTCGGCGGTGGCC
GTGGAGTCGATCCATGCCGGTTGGGACGCCGCTGCCGGGCAATACCGCGAGGTGCCCCAGGACGATCGCGAT
TGGCTGAAGGGTCACCTGGATGCCCTGCGCGCCCAGGGCATGCCCATCGTCGCCATCGACTACCTGCCGCCG
GAGCGGCGCGACGAGGCGCGCGCGCTCGCTGCGCGCCTGCGTAGCGAAGGCTACGTGCCGTTCGTCAGCACC
CCGGCGCTGGACTACCTGGGGGTGAGCGACGTCGAGGTGCAACCGCGGCGCATCGCGCTGCTCTACGATCCG
CGCGAGGGCGACCTGACCCTGAGCCCCGGCCACGTCTACCTCGGCGGCCTGCTCGAATACCTCGGTTATCGG
GTCGACTACCTGCCCACCGACCAGCCGCTGCCCGAACGTCCGCTGAGCGGTCTCTACGCCGGGGTGGTGACC
TGGATGACCAGTGGACCGCCGCTGGCCAGCGACGCCTTCGACAACTGGGTCGCTGCGCGTCTCGACGAAAAG
GTGCCGGTGGCGTTCCTCGCCGGCCTGCCTACCGAGAACGACGGTCTGTTGCAGCGCCTGGGGATTCGCCGA
CTGTCGCAGAAACTCAAGGTCAAGCCGAGCACCGAGACCCACGACCAGGCGCTGCTGGGCGCCTTCGAGGCG
CCGCTGGTGATCCGGATCCGCGACCTGCCGGCGCTCACCGTACTCGACCCGGCGCGGGTGGCCCCGGCGCTC
AAGCTCAAGGGCGACGGCAAGGAGTACGTGCCGGTGGCGACCGCCGACTGGGGCGGCTTCGCCCTGGCGCCC
TATGTGCTGGAGGAGGGTAGCGAGCACCGGCGCTGGATCCTCGATCCGTTCGCCTTCCTGCGCAAGGCCTTG
CGTCTTGTGCCGCTGCCGAGTCCCGACGCGACCACCGAGAATGGCCGGCGCATCGCCACCGTGCACATCGAT
GGCGACGGCTTCGTCTCCCGTGCCGAGGTGCCCGGCAGTCCCTATGCCGGCCAGCAGGTGCTGGAGGACTTC
ATCAAGCCCTATCCGTTCCTCACCTCGGTCTCGGTGATCGAAGGCGAGGTCGGGCCGAAGGGCATGTACCCG
CACCTGGCCAGGGAGCTGGAGCCGATCGCCCGGCGCATCTTCGCCGACGACAAGGTCGAGGTCGCCAGCCAT
ACCTTCAGCCATCCGTTCTTCTGGCAGCCGCAACTGGCCGAGCAGGGCGAGAACTTCGAGGCCCAGTATGGC
TACAAGATGGCCATCCCGGGCTACGACAAGGTCGACTTCGTACGCGAGGTGATCGGGGCCCGCGACTACATC
GAGCAGCGCCTGACCACCCCGCGGAAGCCGGTGAAGATGATCTTCTGGTCCGGCGACGCGCTGCCCGACACC
GCCACCATCAAGCTCGCCTACGACGCCGGGCTGATGAACGTCAACGGCGGCAATACCGCGCTGACCCGGGCC
TTTCCCTCGCTGACCGGACTCTACCCGCTGATCCGGCCCACCCGCGGCGGCGTGCAGTACTACGCGCCGATC
ATCAACGAGAACGTCTACACCAATCTCTGGCAGGGGCCGTACTACGGCTTCCGCGGCGTCATCGATACCTTC
GCCCTGACCGACAGCCCGCGCCGCCTGCGCGGCCTGCACCTGTACTACCACTTCTATTCGGGGACCAAGCAG
GCCTCGATCCGCACCATGCACCAGATCTACGCGGCGATGCAGGCGGAGCATCCGTTGTCGCTGTGGATGAGC
GACTACATCCCGCGCCTGGAAGGCCTGCATCGCGCCAGCCTGGCCAAGCGTGCCGATGGCAGCTGGCAGTTG
CGCGGCTTCGCCGCCTTGCGCACGGTGCGCCTGGACCCGGCGCTGGGTTGGCCGGACCTCGCTCGCTCCACG
GGAGTCGCGGGCGTGCGCGACCTGCCCCAGGGGCGCTATGTACACCTGAGTGCGGCGAATGCGCGCCTGGTC
CTGCGCGACAGCCGCGATCCGCGGCCGGCGCTGGAGGAGGCCAACCTGCCGCTGAAGCACTGGCGCTACCGC
GACGATGGCCGCGTCGAGTTCGCCTTCGCCGGGCACCTGCCATTGCGCCTGGTGGTGCGCGCGGCGGGCGAT
TGCCGGCTGAGCGCGGCCGGCAAGGCCTTCCCGGGAAAGGCCGGCAACGGCCTGTGGACGTTCGAGTTGCCG
ATGGAGCAGGTGCGCGATGGCCAACTCGTCTGCCGCTGA