ViewGene

Locus Name:
GeneID:
Location:

GeneID:858
TrivialName: PA14_08430
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08430
PAO1 Ortholog Locus:PA0657
Sequence Length:1482
Protein Length:493
Start: 720683
Stop: 722164
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04046.1|AE004500_12 (AE004500) probable ATPase [Pseudomonas aeruginosa PAO1]
Identities = 490/493 (99%), Positives = 492/493 (99%)
Sequence:
GTGAAGAACGACATACACGACCTCGGCCTGGTCCTGGATTCCCGGGTCAAGCTGATCCTGATCGAGTCCTGG
GACGAGCCGAAGGTGATGGAAACCCTCACCGGCCTGGCGGTCAGGCGCGGCCTTGGCCTGTATGCCTGGTCG
GTGACCGAGGGCGTGCAGCGCCTGGGCTTCGGCGGCGAGCCGCTGGGCGGGGAGGAGAGCCGCGACCCGGTC
GCGGCGTTGCGCTTGATCAAGCACGATCAGCAGGCGAATCTCTACGTGCTCTGCGACCTGCATCCTTTCCTT
GGCGACAGCCCGACCCTGGTGCGCCTGCTCAAGGAAATCGCCATGGCCGAAGGCAATCATCGACCGACCGTG
GTGCTGGTGTCCCATGCGCTGAAGCTGCCGGCCGAAGTGCAGCGCTTCGCCGCGCGGTTCTCGCTGTCCCTG
CCCAGCGAGGACGAACTGCTCGGCATCGTCCGCGAGGAAGCGACGCGCTGGAGCGAGCGCAACCGTGGTGCC
CGCGTGCGCACCGACAACCGCACCCTGCAGCAGGTGGTGAAGAACCTGCGTGGGCTCAGCCATGCCGAGGCG
CGGCTGCTGGCGCGCAACGTGATCTGCAACGATGGGGCGATCACCCAGGAGGACCTGCCCGAGCTGAACCGC
ACCAAGTTCCAGCTACTCGACCTGGAGGGCGTGCTGAGCTTCGAGTACGACACCGCGCGCTTCGCCGAGGTC
GGCGGGCTTGCCGCGCTCAAGCGCTGGCTCGGCGAGCGTCAGTCGGCGTTCCTCGCCGGCAAGCCTGGCGAC
CAGCCGAAGGGCATGATGCTGGTCGGCGTGCAGGGCGCCGGCAAGAGCCTGGCGGCCAAGGCGGTGGCCGGC
CTCTGGGGCTTGCCGTTGCTGCGTCTGGATTTCGCCTGTCTCTACAACAAGTACTTCGGCGAAACCGAGCGC
AACCTGCGCGAGGCGCTGCGCCTGGCCGAACAGATGGCGCCCTGCGTGCTGTGGATGGATGAAGTGGAGAAG
GGCATTTCTGGCGGCGACCAGGACAACGGCGTCAGTCAGCGCGTGCTGGGTACCCTGCTGACCTGGATGGCC
GAGCGCGAGGCGCCGGTCTTCATGGTCGCCACCGCGAACGCTATCGACCGCCTGCCGCCCGAACTGATCCGC
AAGGGACGCTTCGACGAATTGTTCTTCGTCGACCTGCCGACGCCGGAGGTTCGCGCCGAGATCTTCCGCATC
CATCTGCAACGCCGCGAGCTGGAGCCGGCACAGTTCGACCTCCTTCTGCTGGCGGCTGCCAGCGAGGGTTTC
AGCGGGGCGGAGATCGAGCAGGCGGTGGTGGCGGCACTGTACGCCGGGCAGGCGCGACAGCAGGCGGTGGAT
CAGGAGCTGTTGCTCAGGGAGCTGTCGCGAACCTCGCCGCTGTCGGTGCTGATGGCGGAAAAGCTCGCCGCG
CTGCGGACCTGGGCCAAGGGGCGGGCGGTGCCGGCAGACTGA
Translation:
MKNDIHDLGLVLDSRVKLILIESWDEPKVMETLTGLAVRRGLGLYAWSVTEGVQRLGFGGEPLGGEESRDPV
AALRLIKHDQQANLYVLCDLHPFLGDSPTLVRLLKEIAMAEGNHRPTVVLVSHALKLPAEVQRFAARFSLSL
PSEDELLGIVREEATRWSERNRGARVRTDNRTLQQVVKNLRGLSHAEARLLARNVICNDGAITQEDLPELNR
TKFQLLDLEGVLSFEYDTARFAEVGGLAALKRWLGERQSAFLAGKPGDQPKGMMLVGVQGAGKSLAAKAVAG
LWGLPLLRLDFACLYNKYFGETERNLREALRLAEQMAPCVLWMDEVEKGISGGDQDNGVSQRVLGTLLTWMA
EREAPVFMVATANAIDRLPPELIRKGRFDELFFVDLPTPEVRAEIFRIHLQRRELEPAQFDLLLLAAASEGF
SGAEIEQAVVAALYAGQARQQAVDQELLLRELSRTSPLSVLMAEKLAALRTWAKGRAVPAD*
AnnotationID:867GeneID:858
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 18:06:46
Gene Name:
Confidence Code:3
GeneProduct:putative ATPase associated with various cellular activities
Cell Localization:()
Synonyms:PA0657
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0464,pfam00004
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN56598.1|AE015797_9 (AE015797) ATPase, AAA family [Shewanella oneidensis MR-1]
          Length = 495

 Score =  474 bits (1220), Expect = e-133
 Identities = 245/496 (49%), Positives = 347/496 (69%), Gaps = 12/496 (2%)
Structural Features:
COG0464, SpoVK, ATPases of the AAA+ class 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 494 residues,  89.1% aligned
Score =  195 bits (496), Expect = 1e-50
Identities = 119/462 (25%), Positives = 195/462 (42%), Gaps = 36/462 (7%)

pfam00004, AAA, ATPase family associated with various cellular activities (AAA). 
CD-Length = 186 residues,  96.8% aligned
Score =  137 bits (347), Expect = 2e-33
Identities = 70/181 (38%), Positives = 101/181 (55%), Gaps = 5/181 (2%)
Genomic Context:
Comment:
ReferenceID:14243
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18861
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34614
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:858_cdd.html
URL:
Homologs By Global Alignment
Gene ID:858

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1546 PA0657_tr translation of PA0657 493 99.39 99.79 0 2482.0
55721 gb|AAG04046.1|AE004500_12 (AE004500) probable ATPase [Pseudomonas aeruginosa PAO1] 493 99.18 99.79 0 2479.0
55722 gb|AAN56598.1|AE015797_9 (AE015797) ATPase, AAA family [Shewanella oneidensis MR-1] 503 48.90 69.18 18 1230.0
55723 gb|AAC60393.1| (S77740) ORF 376 [Synechocystis] 507 31.16 45.75 145 713.0
55724 dbj|BAA00888.1| (D10004) ORF376 [Synechocystis sp.] 507 31.16 45.75 145 713.0
GC ORFID: 43860How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0657Glimmer Score:
Start: 6522026Stop: 6523507
Length: 1482
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0657 translation of PA0657Homolog Bit Score 960.0
Other Homologs: t_PA0657 (ORF: GLIMMER)
GC ORF Sequence
GTGAAGAACGACATACACGACCTCGGCCTGGTCCTGGATTCCCGGGTCAAGCTGATCCTGATCGAGTCCTGG
GACGAGCCGAAGGTGATGGAAACCCTCACCGGCCTGGCGGTCAGGCGCGGCCTTGGCCTGTATGCCTGGTCG
GTGACCGAGGGCGTGCAGCGCCTGGGCTTCGGCGGCGAGCCGCTGGGCGGGGAGGAGAGCCGCGACCCGGTC
GCGGCGTTGCGCTTGATCAAGCACGATCAGCAGGCGAATCTCTACGTGCTCTGCGACCTGCATCCTTTCCTT
GGCGACAGCCCGACCCTGGTGCGCCTGCTCAAGGAAATCGCCATGGCCGAAGGCAATCATCGACCGACCGTG
GTGCTGGTGTCCCATGCGCTGAAGCTGCCGGCCGAAGTGCAGCGCTTCGCCGCGCGGTTCTCGCTGTCCCTG
CCCAGCGAGGACGAACTGCTCGGCATCGTCCGCGAGGAAGCGACGCGCTGGAGCGAGCGCAACCGTGGTGCC
CGCGTGCGCACCGACAACCGCACCCTGCAGCAGGTGGTGAAGAACCTGCGTGGGCTCAGCCATGCCGAGGCG
CGGCTGCTGGCGCGCAACGTGATCTGCAACGATGGGGCGATCACCCAGGAGGACCTGCCCGAGCTGAACCGC
ACCAAGTTCCAGCTACTCGACCTGGAGGGCGTGCTGAGCTTCGAGTACGACACCGCGCGCTTCGCCGAGGTC
GGCGGGCTTGCCGCGCTCAAGCGCTGGCTCGGCGAGCGTCAGTCGGCGTTCCTCGCCGGCAAGCCTGGCGAC
CAGCCGAAGGGCATGATGCTGGTCGGCGTGCAGGGCGCCGGCAAGAGCCTGGCGGCCAAGGCGGTGGCCGGC
CTCTGGGGCTTGCCGTTGCTGCGTCTGGATTTCGCCTGTCTCTACAACAAGTACTTCGGCGAAACCGAGCGC
AACCTGCGCGAGGCGCTGCGCCTGGCCGAACAGATGGCGCCCTGCGTGCTGTGGATGGATGAAGTGGAGAAG
GGCATTTCTGGCGGCGACCAGGACAACGGCGTCAGTCAGCGCGTGCTGGGTACCCTGCTGACCTGGATGGCC
GAGCGCGAGGCGCCGGTCTTCATGGTCGCCACCGCGAACGCTATCGACCGCCTGCCGCCCGAACTGATCCGC
AAGGGACGCTTCGACGAATTGTTCTTCGTCGACCTGCCGACGCCGGAGGTTCGCGCCGAGATCTTCCGCATC
CATCTGCAACGCCGCGAGCTGGAGCCGGCACAGTTCGACCTCCTTCTGCTGGCGGCTGCCAGCGAGGGTTTC
AGCGGGGCGGAGATCGAGCAGGCGGTGGTGGCGGCACTGTACGCCGGGCAGGCGCGACAGCAGGCGGTGGAT
CAGGAGCTGTTGCTCAGGGAGCTGTCGCGAACCTCGCCGCTGTCGGTGCTGATGGCGGAAAAGCTCGCCGCG
CTGCGGACCTGGGCCAAGGGGCGGGCGGTGCCGGCAGACTGA