ViewGene

Locus Name:
GeneID:
Location:

GeneID:854
TrivialName: PA14_13520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13520
PAO1 Ortholog Locus:PA3894
Sequence Length:1491
Protein Length:496
Start: 1162672
Stop: 1164162
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07281.1|AE004806_8 (AE004806) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
Identities = 493/496 (99%), Positives = 494/496 (99%)
Sequence:
TTGGTCGGCTCCTTCGTCGGTTTTCTCGTCGTTTTCTCCGCAATATCCGGTTGTGTCAGTACAGGCGATATC
GCCCCCCAGGCCGCCACGCTCGACGCCAACGCCCTGGCCACCGACCATGCGATCCAGGCTGCCGCCCGCGAG
GCCGGCTGGCCGCAGGCGCAGTGGTGGAAGGTGTATGCCGATCCGCAGTTGGACGCCTGGATCGAGAAGGCG
CTGGACGGCAATCCAGGCCTGGCGGTAGCCCATGCGCGGGTACGCCAGGCGAAGTCCATGGCCGGGCTGGTG
GAGTCCATCGAGTCGCCGCAGATCGAGGGCAAGGGCTCGCTGGTCCGCCACCGCTGGCCGGACGACTATTTC
TACGGCCCCGGCGACCTGGCGCGGACCACTTCCTGGAACAACTCCACCGAGATCGCCCTGAACTACAAGCTC
GATCTCTGGGGGCGCGACCGCAGCGACAGCGAGCGCGCCGTCGACCTGGCCCACATGGCCGCCGCCGAGGCG
CGCCAGGCGCAGCTCGAGCTGGAGGGCAACATCGTGCGCGCCTACGTCCAGCTCTCGTTGCAGTACGCCGAG
ATGGACATCGCCAAGGCCATGCTGCAACAGCAGCGCGACATCCTCGCCCTGGCCCAGCGTCGCCTGCGCGGC
GGCATCGGCACGCATTTCGAGGTCAGCCAGGCGGAAGTGCCGCTGCCCGAGACCGAGCGCCGCATCGAGGTG
ATCGACGAAGAAATCCAGCTCACCCGCAACCTGCTCGCCGCCCTGGCCGGCAAGGGCCCGGGCGAGGGCAGC
ACGATCCGCCGGCCAAGCCTGAACCTGGCGGCGCAGCCGAGCCTGCCCAGCGCCTTGCCGGCCGAACTGCTC
GGTCGCCGCCCGGATGTGGTCGCCCGCCGCTGGCAGGTCGCCGCCCTGGCCAAGGGCGTGGACGTGGCGCGC
GCCGACTTCTACCCCAACGTCGACCTGATGGCCTCGGTCGGCTTCAGTGCCGTCGGCGGCGGCATGCTGGAG
TTCTTCCGCAGCGCCAAGTACACCTACAGCGCCGGCCCGGCGGTGACCCTGCCGATCTTCGACGGCGGCCGC
CTGCGTTCGCAGTTGGGCGAGGCGGCGGCCGGCTACGACGCGGCGGTGGAGCAATACAACCAGACCCTGGTG
GATGCGCTGAAGAACATTTCCGACCAGTTGATCCGCCTGCATTCGGTGGACATCCAGAAGGACTTCGCCGCG
CAATCGGTGGCTTCCGCGCAGAAGACCTACGATATCGCCACCCTGGCCTACCAGCGCGGCCTCACCGATTAC
CTCAACGTGCTCAACGCGCAGACCCGGCTGTTCCAGCAGCAACTGGTCCAGGAGCAGGTGCAGGCCGCCCGG
CTGGCCGCCCATGCCAGCCTGCTCACCGCCCTCGGCGGCGGCGTCGGGGCCGGCGCCGATACGCCGGCGCAG
CGGAAGCTGGCGCCGGAGAACGTCCCGGTCAGAGCGGTATCTTCGCGATGA
Translation:
MVGSFVGFLVVFSAISGCVSTGDIAPQAATLDANALATDHAIQAAAREAGWPQAQWWKVYADPQLDAWIEKA
LDGNPGLAVAHARVRQAKSMAGLVESIESPQIEGKGSLVRHRWPDDYFYGPGDLARTTSWNNSTEIALNYKL
DLWGRDRSDSERAVDLAHMAAAEARQAQLELEGNIVRAYVQLSLQYAEMDIAKAMLQQQRDILALAQRRLRG
GIGTHFEVSQAEVPLPETERRIEVIDEEIQLTRNLLAALAGKGPGEGSTIRRPSLNLAAQPSLPSALPAELL
GRRPDVVARRWQVAALAKGVDVARADFYPNVDLMASVGFSAVGGGMLEFFRSAKYTYSAGPAVTLPIFDGGR
LRSQLGEAAAGYDAAVEQYNQTLVDALKNISDQLIRLHSVDIQKDFAAQSVASAQKTYDIATLAYQRGLTDY
LNVLNAQTRLFQQQLVQEQVQAARLAAHASLLTALGGGVGAGADTPAQRKLAPENVPVRAVSSR*
AnnotationID:863GeneID:854
AnnotatorUID: diggins
Modification Date/Time: 2005-04-25 20:08:54
Gene Name:
Confidence Code:3
GeneProduct:putative outer membrane protein
Cell Localization:()
Synonyms:PA3894
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1538,pfam02321
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66887.1|AE016317_4 (AE016778) fusaric acid resistance protein, putative [Pseudomonas
           putida KT2440]
          Length = 509

 Score =  617 bits (1591), Expect = e-176
 Identities = 307/475 (64%), Positives = 371/475 (78%)

>gb|AAO54744.1| (AE016860) outer membrane efflux protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 498

 Score =  591 bits (1523), Expect = e-168
 Identities = 292/464 (62%), Positives = 366/464 (78%)
Structural Features:
COG1538, TolC, Outer membrane protein 
[Cell envelope biogenesis, outer membrane / 
Intracellular trafficking and secretion]
CD-Length = 457 residues,  99.3% aligned
Score =  241 bits (616), Expect = 3e-64
Identities = 151/459 (32%), Positives = 219/459 (47%), Gaps = 5/459 (1%)

pfam02321, OEP, Outer membrane efflux protein.
CD-Length = 188 residues, 100.0% aligned
Score =  102 bits (255), Expect = 2e-22
Genomic Context:
Comment:
ReferenceID:14241
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18853
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31672
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:854_cdd.html
URL:
Homologs By Global Alignment
Gene ID:854

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1538 PA3894_tr translation of PA3894 496 99.39 99.59 0 2485.0
55441 gb|AAG07281.1|AE004806_8 (AE004806) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1] 496 99.19 99.59 0 2483.0
55442 gb|AAN66887.1|AE016317_4 (AE016778) fusaric acid resistance protein, putative [Pseudomonas putida KT2440] 509 61.49 75.04 13 1590.0
55443 gb|AAO54744.1| (AE016860) outer membrane efflux protein [Pseudomonas syringae pv. tomato str. DC3000] 509 58.54 73.87 24 1515.0
55444 dbj|BAA02064.1| (D12503) fusA [Burkholderia cepacia] 547 34.73 46.06 165 848.0
GC ORFID: 43856How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3894Glimmer Score:
Start: 3791266Stop: 3789776
Length: 1491
Start Codon: TTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3894 translation of PA3894Homolog Bit Score 961.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene4365 (ORF: BLASTX 592.0), t_PA3894 (ORF: GLIMMER)
GC ORF Sequence
TTGGTCGGCTCCTTCGTCGGTTTTCTCGTCGTTTTCTCCGCAATATCCGGTTGTGTCAGTACAGGCGATATC
GCCCCCCAGGCCGCCACGCTCGACGCCAACGCCCTGGCCACCGACCATGCGATCCAGGCTGCCGCCCGCGAG
GCCGGCTGGCCGCAGGCGCAGTGGTGGAAGGTGTATGCCGATCCGCAGTTGGACGCCTGGATCGAGAAGGCG
CTGGACGGCAATCCAGGCCTGGCGGTAGCCCATGCGCGGGTACGCCAGGCGAAGTCCATGGCCGGGCTGGTG
GAGTCCATCGAGTCGCCGCAGATCGAGGGCAAGGGCTCGCTGGTCCGCCACCGCTGGCCGGACGACTATTTC
TACGGCCCCGGCGACCTGGCGCGGACCACTTCCTGGAACAACTCCACCGAGATCGCCCTGAACTACAAGCTC
GATCTCTGGGGGCGCGACCGCAGCGACAGCGAGCGCGCCGTCGACCTGGCCCACATGGCCGCCGCCGAGGCG
CGCCAGGCGCAGCTCGAGCTGGAGGGCAACATCGTGCGCGCCTACGTCCAGCTCTCGTTGCAGTACGCCGAG
ATGGACATCGCCAAGGCCATGCTGCAACAGCAGCGCGACATCCTCGCCCTGGCCCAGCGTCGCCTGCGCGGC
GGCATCGGCACGCATTTCGAGGTCAGCCAGGCGGAAGTGCCGCTGCCCGAGACCGAGCGCCGCATCGAGGTG
ATCGACGAAGAAATCCAGCTCACCCGCAACCTGCTCGCCGCCCTGGCCGGCAAGGGCCCGGGCGAGGGCAGC
ACGATCCGCCGGCCAAGCCTGAACCTGGCGGCGCAGCCGAGCCTGCCCAGCGCCTTGCCGGCCGAACTGCTC
GGTCGCCGCCCGGATGTGGTCGCCCGCCGCTGGCAGGTCGCCGCCCTGGCCAAGGGCGTGGACGTGGCGCGC
GCCGACTTCTACCCCAACGTCGACCTGATGGCCTCGGTCGGCTTCAGTGCCGTCGGCGGCGGCATGCTGGAG
TTCTTCCGCAGCGCCAAGTACACCTACAGCGCCGGCCCGGCGGTGACCCTGCCGATCTTCGACGGCGGCCGC
CTGCGTTCGCAGTTGGGCGAGGCGGCGGCCGGCTACGACGCGGCGGTGGAGCAATACAACCAGACCCTGGTG
GATGCGCTGAAGAACATTTCCGACCAGTTGATCCGCCTGCATTCGGTGGACATCCAGAAGGACTTCGCCGCG
CAATCGGTGGCTTCCGCGCAGAAGACCTACGATATCGCCACCCTGGCCTACCAGCGCGGCCTCACCGATTAC
CTCAACGTGCTCAACGCGCAGACCCGGCTGTTCCAGCAGCAACTGGTCCAGGAGCAGGTGCAGGCCGCCCGG
CTGGCCGCCCATGCCAGCCTGCTCACCGCCCTCGGCGGCGGCGTCGGGGCCGGCGCCGATACGCCGGCGCAG
CGGAAGCTGGCGCCGGAGAACGTCCCGGTCAGAGCGGTATCTTCGCGATGA