ViewGene

Locus Name:
GeneID:
Location:

GeneID: 853

TrivialName: PA14_65520

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_65520

PAO1 Ortholog Locus: PA4958

Sequence Length: 1464

Protein Length: 487

Start: 5835355

Stop: 5836818

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG08343.1|AE004908_9 (AE004908) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 478/487 (98%), Positives = 479/487 (98%)

Sequence:

GTGGTCCAGGAAGCGCCGCGCAACAGCCGCGACCGCGCGCAGTTGCTCGCGGTCGGCATCCAGCGGGCGATC
CGCAGCCTGTGCGGCCCGCTGATCCGTGCCAGCCAGTTGTACTGCCCGGTCCCCGAGGGGCTTTGGCTGGAA
CTCCACCAGCTCTACCAGTTGGCCAGCCAGCGCGGCGTGCATCGTCTCGCGGTGCGCGACGAACTGGCCAAG
CACACCCCCGGCCTGAGCGTCGAGCAGGCCTACCTGATACCGCTGCTGCTCGGCTGCGCGCGCTGCAACCAG
ATGCGCCAGAACAACATTGCACGGCTCGCCGAGGTGCTCGAACCCTGGAGCCAATTGCTGTCGATACAGAGC
GCGGCGCTGCCCGGCTCGCTGTTCATCGCCGTGCCGCAGATCGACGGCCCGCCGCGCTACCGCTCGCTGTAC
CCGGAGACCCAACTGGCCAATGCCCTGGGCATCGACACCCAGCCGCTGGTCGAACTGATCCGCGAATACCTG
CTGCAGCCCGAGGCCGAGCGCGCGAAGGCGCGCCTGCCGCTGATCGAAGGGGTGACCCTGGACCTGCTGCAA
CATCTCTCCTCGGCCTGGGGAGACATCGCCGAACGTACCTTCCAGCGCACCCAGGGCCAGGGCCAGTTGACC
CTGTGCATCGGCATGAGCGCCCTGCACTACTTCCTCGCCGGGCGCCGCCCGTTCAACGAGGTCCTGCAGATC
CAGGAAGCGCCCGAGGCGCCTCGCTTCAAGGCCGACGTCCAGGACGCCTGGGCCGGCGCCTTCGATGCGCAG
AAGGTCACCGACTGGCAGCCCGGCATGCCGCTGGAGGAAATCGAGTACCGCCCGCACCAGTCGTCCCGCGGT
GGGCAGCCCGATCACCCGCAGGCCCACGCACAGACTGACGCCACCGAGGACTATCCGACCTACGCCCTGCCC
ATCGTCAACCACAGCCCCGGCGGTTATTGCCTGAGCTGGCCGAAGGAGGTGCCCGCCCAACTGCAGGCGGGC
GAACTGGTCGGTCTGCAGGACCTTCCCGGCCAGGCGTGGAGCATCGCGGTGGTGCGCTGGATCCGCCAGGTG
CGCAATGGCGGCACGCAGATGGGCATCGAGATGATCGCCCCGGCGGCGCAGCCCTGCGGCCTGCAACTGCTG
CGCAAGACCGAGCAGAGCAGCCACTACCTGCGCGCCCTGCTGCTGCCGGAAATCGCCGCGATCTCGCGGCCG
GCGACGGTGATCACCCCGCGCCTGCCGTTCCAGGAGGGCAGCCGGGTGCAGATCAACCTGCACGGCGAGGAG
CGGCGCGCGGTGCTGAATCGCCGGCAGGCCTCGACCGGCAGCTTCAGCCAGTTCGAATACCGCTCGGCGGAA
CCGGTGAACACCCCGAGCGATAAGCCGGTCACAGCGCCAGTGGCCCGGCCGCCTGCGGGGGAGGAAGATTTT
GACTCGCTCTGGAAGTCTCTGTAG

Translation:

MVQEAPRNSRDRAQLLAVGIQRAIRSLCGPLIRASQLYCPVPEGLWLELHQLYQLASQRGVHRLAVRDELAK
HTPGLSVEQAYLIPLLLGCARCNQMRQNNIARLAEVLEPWSQLLSIQSAALPGSLFIAVPQIDGPPRYRSLY
PETQLANALGIDTQPLVELIREYLLQPEAERAKARLPLIEGVTLDLLQHLSSAWGDIAERTFQRTQGQGQLT
LCIGMSALHYFLAGRRPFNEVLQIQEAPEAPRFKADVQDAWAGAFDAQKVTDWQPGMPLEEIEYRPHQSSRG
GQPDHPQAHAQTDATEDYPTYALPIVNHSPGGYCLSWPKEVPAQLQAGELVGLQDLPGQAWSIAVVRWIRQV
RNGGTQMGIEMIAPAAQPCGLQLLRKTEQSSHYLRALLLPEIAAISRPATVITPRLPFQEGSRVQINLHGEE
RRAVLNRRQASTGSFSQFEYRSAEPVNTPSDKPVTAPVARPPAGEEDFDSLWKSL*

AnnotationID:862 GeneID:853

AnnotatorUID: diggins

Modification Date/Time: 2005-03-13 17:05:19

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA4958

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:14239

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:18851

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:853

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

1537 PA4958_tr translation of PA4958 487 98.15 98.35 0 2486.0

55439 gb|AAG08343.1|AE004908_9 (AE004908) hypothetical protein PA4958 [Pseudomonas aeruginosa PAO1] 487 97.94 98.35 0 2483.0

55440 gb|AAO58384.1| (AE016873) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 617 41.16 54.29 152 1298.0

GC ORFID: `43855`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA4958`	Glimmer Score:
Start: `5099036`	Stop: `5100499`
Length: `1464`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog: `t_PA4958 translation of PA4958`	Homolog Bit Score `962.0`
Other Homologs: `psyr_15may02_Scaffold2_revised_gene3669 (ORF: BLASTX 687.0), t_PA4958 (ORF: GLIMMER)`
GC ORF Sequence
GTGGTCCAGGAAGCGCCGCGCAACAGCCGCGACCGCGCGCAGTTGCTCGCGGTCGGCATCCAGCGGGCGATC CGCAGCCTGTGCGGCCCGCTGATCCGTGCCAGCCAGTTGTACTGCCCGGTCCCCGAGGGGCTTTGGCTGGAA CTCCACCAGCTCTACCAGTTGGCCAGCCAGCGCGGCGTGCATCGTCTCGCGGTGCGCGACGAACTGGCCAAG CACACCCCCGGCCTGAGCGTCGAGCAGGCCTACCTGATACCGCTGCTGCTCGGCTGCGCGCGCTGCAACCAG ATGCGCCAGAACAACATTGCACGGCTCGCCGAGGTGCTCGAACCCTGGAGCCAATTGCTGTCGATACAGAGC GCGGCGCTGCCCGGCTCGCTGTTCATCGCCGTGCCGCAGATCGACGGCCCGCCGCGCTACCGCTCGCTGTAC CCGGAGACCCAACTGGCCAATGCCCTGGGCATCGACACCCAGCCGCTGGTCGAACTGATCCGCGAATACCTG CTGCAGCCCGAGGCCGAGCGCGCGAAGGCGCGCCTGCCGCTGATCGAAGGGGTGACCCTGGACCTGCTGCAA CATCTCTCCTCGGCCTGGGGAGACATCGCCGAACGTACCTTCCAGCGCACCCAGGGCCAGGGCCAGTTGACC CTGTGCATCGGCATGAGCGCCCTGCACTACTTCCTCGCCGGGCGCCGCCCGTTCAACGAGGTCCTGCAGATC CAGGAAGCGCCCGAGGCGCCTCGCTTCAAGGCCGACGTCCAGGACGCCTGGGCCGGCGCCTTCGATGCGCAG AAGGTCACCGACTGGCAGCCCGGCATGCCGCTGGAGGAAATCGAGTACCGCCCGCACCAGTCGTCCCGCGGT GGGCAGCCCGATCACCCGCAGGCCCACGCACAGACTGACGCCACCGAGGACTATCCGACCTACGCCCTGCCC ATCGTCAACCACAGCCCCGGCGGTTATTGCCTGAGCTGGCCGAAGGAGGTGCCCGCCCAACTGCAGGCGGGC GAACTGGTCGGTCTGCAGGACCTTCCCGGCCAGGCGTGGAGCATCGCGGTGGTGCGCTGGATCCGCCAGGTG CGCAATGGCGGCACGCAGATGGGCATCGAGATGATCGCCCCGGCGGCGCAGCCCTGCGGCCTGCAACTGCTG CGCAAGACCGAGCAGAGCAGCCACTACCTGCGCGCCCTGCTGCTGCCGGAAATCGCCGCGATCTCGCGGCCG GCGACGGTGATCACCCCGCGCCTGCCGTTCCAGGAGGGCAGCCGGGTGCAGATCAACCTGCACGGCGAGGAG CGGCGCGCGGTGCTGAATCGCCGGCAGGCCTCGACCGGCAGCTTCAGCCAGTTCGAATACCGCTCGGCGGAA CCGGTGAACACCCCGAGCGATAAGCCGGTCACAGCGCCAGTGGCCCGGCCGCCTGCGGGGGAGGAAGATTTT GACTCGCTCTGGAAGTCTCTGTAG