ViewGene
Locus Name:
GeneID:
Location:

GeneID:852
TrivialName: PA14_15080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15080
PAO1 Ortholog Locus:PA3789
Sequence Length:1416
Protein Length:471
Start: 1278843
Stop: 1280258
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07176.1|AE004797_11 (AE004797) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 468/471 (99%), Positives = 470/471 (99%)
Sequence:
ATGCAATCGAACGAAAAGAACGGCCGTGACTTCTACGCGCTGGCCTGGCGCTGGCATTTCTACGCCGGCCTG
TTCGTCGCGCCCTTCATGATCCTGCTGGCGCTGACCGGAATCGTCTACCTGTTCAAGCCGCAACTGGATGCG
CTGCTCTATCCGCAACTGCTGCGGGTCGAAGCCGGTGCGCAGATGCGCAGCGCCGACCAGTTGCTCGCCGGG
GTGCGCCAGGCGCACCCGCAGGCCGCCGTCAGCCAGTACCTGCCGCCGAGCGAGGCGGGGCGCAGCGCGCAA
TTCGTGATTGGCGAAGAGGGCAGGCAATGGAACCTCTTCGTCGATCCCTACAGCGGACGCGAACTCGGCCGC
CAGGATGCGCAACTGAATCTCCAGGCGGTGGCCCGGGCACTGCATGGCGAGCTGATGGTCGGGACCGTCGGC
GACCGGCTGATCGAGCTGGCCGCCGGCTGGGGCATCGTCCTGGTGGTCTCCGGTCTCTATCTGTGGTGGCCG
CGCGGGCGGGCGGCGAGCGCGCTGTTCTGGCCGCGCCTGCACCTGCGCGGACGACCGCTGTGGCGCGATTTA
CATGTGGTCGCCGGGTTCTGGGGCAGCCTGCTGTTGCTGTTCATGCTGCTCAGCGGGATGACCTGGACCGGC
TACTGGGGCAAGCAGTTCGCCGATGTCTGGAACCGCTTCCCGGCGGCGATGTGGAACGATGTGCCGACCTCC
GACATGCAGGCCGGTAGCCTCAACAGCGCGTCGCGCCAGCAGGTGCCCTGGCCGCTGGAGAACACTCCGCTG
CCGCGCTCGCAGCCGCCGGCGGCCGACGCCCATGCCGAGCATCGCGGGCATTCCGCCCAGGCCGGGCACGCG
ATGCCGATGGACATGCCGATGCCGGCGGGCATCCCTCTGCAAAGGGTGGTGGATATCGCCCGCGAGCGCGGC
GTGGCGGCGGGCTACGGGATCGCCCTGCCGAGCGGGATGGAGGGGGTCTACACGATTTCCGTGTTCCCCGAC
GATCCGCGCCACGACGCCACCCTGCACATCGACCAGTACAGCGGCAAGGTTCTCGCCGACGTGCGTTGGCAG
GACTACAACGCGGTGGCGAGGAGCGTGCAGATGGGCGTCGTGCTGCACGAAGGCAAGCTCTTCGGCCTGGGC
AATCAGTTGCTGATGCTCGCGGTCTGCCTGGCGATCCTGCTCAGCTCGGCGAGCGGCCTGTGGATCTGGTGG
AAGCGCAAGCCGGCCGGACGCCTTGGCGTGCCGCCGCTGCGCCACGAGCTGCCGCGCTGGAAGACCGGCATC
GCCATCATGCTGGCGCTGGGCGTGGCCTTCCCGTTGGTGGGGGCCTCGCTCCTGCTGGTCTGGGCGCTGGAC
TGGCTGGTGCTGTCGCGGCTGCCGGCGGTTCGCCGGGTCCTGGCTTGA
Translation:
MQSNEKNGRDFYALAWRWHFYAGLFVAPFMILLALTGIVYLFKPQLDALLYPQLLRVEAGAQMRSADQLLAG
VRQAHPQAAVSQYLPPSEAGRSAQFVIGEEGRQWNLFVDPYSGRELGRQDAQLNLQAVARALHGELMVGTVG
DRLIELAAGWGIVLVVSGLYLWWPRGRAASALFWPRLHLRGRPLWRDLHVVAGFWGSLLLLFMLLSGMTWTG
YWGKQFADVWNRFPAAMWNDVPTSDMQAGSLNSASRQQVPWPLENTPLPRSQPPAADAHAEHRGHSAQAGHA
MPMDMPMPAGIPLQRVVDIARERGVAAGYGIALPSGMEGVYTISVFPDDPRHDATLHIDQYSGKVLADVRWQ
DYNAVARSVQMGVVLHEGKLFGLGNQLLMLAVCLAILLSSASGLWIWWKRKPAGRLGVPPLRHELPRWKTGI
AIMLALGVAFPLVGASLLLVWALDWLVLSRLPAVRRVLA*
AnnotationID:861GeneID:852
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 10:10:20
Gene Name:
Confidence Code:3
GeneProduct:putative iron-regulated membrane protein
Cell Localization:()
Synonyms:PA3789
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3182,pfam03929
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70408.1|AE016682_10 (AE016792) membrane protein, putative [Pseudomonas putida KT2440]
          Length = 455

 Score =  642 bits (1657), Expect = 0.0
 Identities = 308/461 (66%), Positives = 364/461 (78%), Gaps = 15/461 (3%)

>gb|AAO08345.1|AE016813_97 (AE016813) Uncharacterized iron-regulated membrane protein [Vibrio
           vulnificus CMCP6]
          Length = 471

 Score =  327 bits (838), Expect = 1e-88
 Identities = 182/469 (38%), Positives = 267/469 (56%), Gaps = 25/469 (5%)






 
Structural Features:
COG3182, PiuB, Uncharacterized iron-regulated membrane protein
CD-Length = 442 residues,  99.5% aligned
Score =  390 bits (1002), Expect = 6e-109
Identities = 216/464 (46%), Positives = 280/464 (60%), Gaps = 28/464 (6%)

pfam03929, DUF337, Uncharacterized iron-regulated membrane protein.
CD-Length = 368 residues, 100.0% aligned
Score =  276 bits (708), Expect = 6e-75
Identities = 152/406 (37%), Positives = 198/406 (48%), Gaps = 43/406 (10%)







   
Genomic Context:






   
Comment:


















    ReferenceID:1707




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18849




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31768




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:852_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:852
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1536
                           PA3789_tr
                           translation of PA3789
                           471
                           99.36
                           99.78
                           0
                           2487.0
     

     
     
55434
                           gb|AAG07176.1|AE004797_11
                           (AE004797) hypothetical protein PA3789 [Pseudomonas aeruginosa PAO1]
                           471
                           99.36
                           99.78
                           0
                           2487.0
     

     
     
55435
                           dbj|BAA05665.1|
                           (D28119) unnamed protein product [Pseudomonas aeruginosa]
                           471
                           99.36
                           99.78
                           0
                           2487.0
     

     
     
55436
                           gb|AAN70408.1|AE016682_10
                           (AE016792) membrane protein, putative [Pseudomonas putida KT2440]
                           473
                           65.32
                           77.58
                           20
                           1663.0
     

     
     
55437
                           gb|AAO58312.1|
                           (AE016873) membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           471
                           63.90
                           74.94
                           14
                           1598.0
     

     






      

          
GC ORFID: 43854How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3789Glimmer Score: 

          
Start: 3675094Stop: 3673679

          
Length: 1416


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3789 translation of PA3789Homolog Bit Score 962.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5794 (ORF: BLASTX 606.0), t_PA3789 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAATCGAACGAAAAGAACGGCCGTGACTTCTACGCGCTGGCCTGGCGCTGGCATTTCTACGCCGGCCTG 
TTCGTCGCGCCCTTCATGATCCTGCTGGCGCTGACCGGAATCGTCTACCTGTTCAAGCCGCAACTGGATGCG 
CTGCTCTATCCGCAACTGCTGCGGGTCGAAGCCGGTGCGCAGATGCGCAGCGCCGACCAGTTGCTCGCCGGG 
GTGCGCCAGGCGCACCCGCAGGCCGCCGTCAGCCAGTACCTGCCGCCGAGCGAGGCGGGGCGCAGCGCGCAA 
TTCGTGATTGGCGAAGAGGGCAGGCAATGGAACCTCTTCGTCGATCCCTACAGCGGACGCGAACTCGGCCGC 
CAGGATGCGCAACTGAATCTCCAGGCGGTGGCCCGGGCACTGCATGGCGAGCTGATGGTCGGGACCGTCGGC 
GACCGGCTGATCGAGCTGGCCGCCGGCTGGGGCATCGTCCTGGTGGTCTCCGGTCTCTATCTGTGGTGGCCG 
CGCGGGCGGGCGGCGAGCGCGCTGTTCTGGCCGCGCCTGCACCTGCGCGGACGACCGCTGTGGCGCGATTTA 
CATGTGGTCGCCGGGTTCTGGGGCAGCCTGCTGTTGCTGTTCATGCTGCTCAGCGGGATGACCTGGACCGGC 
TACTGGGGCAAGCAGTTCGCCGATGTCTGGAACCGCTTCCCGGCGGCGATGTGGAACGATGTGCCGACCTCC 
GACATGCAGGCCGGTAGCCTCAACAGCGCGTCGCGCCAGCAGGTGCCCTGGCCGCTGGAGAACACTCCGCTG 
CCGCGCTCGCAGCCGCCGGCGGCCGACGCCCATGCCGAGCATCGCGGGCATTCCGCCCAGGCCGGGCACGCG 
ATGCCGATGGACATGCCGATGCCGGCGGGCATCCCTCTGCAAAGGGTGGTGGATATCGCCCGCGAGCGCGGC 
GTGGCGGCGGGCTACGGGATCGCCCTGCCGAGCGGGATGGAGGGGGTCTACACGATTTCCGTGTTCCCCGAC 
GATCCGCGCCACGACGCCACCCTGCACATCGACCAGTACAGCGGCAAGGTTCTCGCCGACGTGCGTTGGCAG 
GACTACAACGCGGTGGCGAGGAGCGTGCAGATGGGCGTCGTGCTGCACGAAGGCAAGCTCTTCGGCCTGGGC 
AATCAGTTGCTGATGCTCGCGGTCTGCCTGGCGATCCTGCTCAGCTCGGCGAGCGGCCTGTGGATCTGGTGG 
AAGCGCAAGCCGGCCGGACGCCTTGGCGTGCCGCCGCTGCGCCACGAGCTGCCGCGCTGGAAGACCGGCATC 
GCCATCATGCTGGCGCTGGGCGTGGCCTTCCCGTTGGTGGGGGCCTCGCTCCTGCTGGTCTGGGCGCTGGAC 
TGGCTGGTGCTGTCGCGGCTGCCGGCGGTTCGCCGGGTCCTGGCTTGA