ViewGene
Locus Name:
GeneID:
Location:

GeneID:851
TrivialName: PA14_69840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69840
PAO1 Ortholog Locus:PA5290
Sequence Length:1494
Protein Length:497
Start: 6226776
Stop: 6228269
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08675.1|AE004941_8 (AE004941) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 492/497 (98%), Positives = 493/497 (99%)
Sequence:
ATGTCCCTGGCGATTGTCCACAGCCGAGCCCAGGTCGGCGTCGAAGCCCCCTGCGTCAGCGTCGAGGCGCAC
CTGGCCAACGGCCTGCCTTCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTGCGCGAGAGCAAGGACCGC
GTGCGCAGCGCCCTGCTCAATGCCGGTTTCGACTTCCCCGCGCGGCGCATCACCCTCAACCTCGCCCCCGCC
GACCTGCCCAAGGACGGCGGTCGCTTCGACCTGGCCATCGCACTCGGCATCCTCGCCGCCAGCGGCCAGTTG
CCCGGCACCACCCTCGACGGCCTGGAGTGCCTTGGCGAACTGGCCCTGTCCGGGGCGATCCGGCCAGTGCGA
GGCGTATTGCCGGCCGCGCTGGCGGCGCGCGACGCAAGGCACGTTCTGGTGGTACCGAAGGAAAATGCCGAA
GAGGCCAGCCTGGCCAGCGGGCTGACGGTGTTCGCCGTGGACCACCTGCTGGAGATCGCCGGACACCTCTCC
GGCCAGGCCCCGCTGCTGCCCTACCAGGCCCGCGGCCTGCTCCGCGCGCCCTTCCCTTATCCAGACCTGGCC
GAGGTCCAGGGCCAGGCCGCCGCCAAGCGCGCCCTGCTGGTGGCCGCCGCCGGCGCGCACAACCTGTTGCTC
AGCGGCCCGCCGGGCACCGGCAAGACCCTCCTGGCCAGCCGCCTGCCCGGCCTGCTGCCGGCGCTCGACGAG
GACGAGGCCCTGGAGGTCGCAGCGATCCATTCGGTGGCCAGCCACGTCCCCCTCAGGCACTGGCCGCAGCGA
CCGTTCCGCCAGCCGCACCACTCCGCCTCCGCGCCGGCCCTGGTCGGCGGCGGCAGCCGCCCGCAGCCGGGC
GAGATCACCCTGGCGCACCAGGGCGTGCTGTTCCTCGACGAACTGCCGGAGTTCGAGCGCAAGGTCCTGGAG
GTCCTGCGCGAGCCGCTGGAAAGCGGCGAGATCGTCATTGCCCGGGCCAACGGCCGGGTACGTTTCCCGGCG
CGCTTCCAACTGGTGGCGGCGATGAATCCCTGTCCCTGTGGCTACCTCGGCGATCCCAGCGGCCGCTGCCGC
TGCACCCCGGAACAGGTCCAGCGCTACCGGGGCAAGCTGTCCGGACCGCTGCTCGATCGCATCGACCTGCAC
GTCAGCGTGCTCCGCGAAAGCACCAGCCTGCAGCCAGGACACGGCGAAACCGCTACCGCCGAGATCAGCGAA
CGGGTTGGCGCCGCACGGCAACGGCAACTGGCCCGCCAGGGCTGCGCCAATGCCCATCTCGACCTCCAGGCG
ATGCACCGCAATTGTGCACTCGCCGAAGCGGACCGCCGCTGGCTGGAGGCTGCCGGAGAGCGCCTGGAACTT
TCCTTGCGCGCCTTGCATCGCATACTCAAGGTGGCCCGGACGCTGGCCGACCTGGAGCGCATCGATGCCATC
GAACGCCGGCACCTGGCGGAAGCCCTGCAGTATCGGGCAACGACCTCCACGTGA
Translation:
MSLAIVHSRAQVGVEAPCVSVEAHLANGLPSLTLVGLPETAVRESKDRVRSALLNAGFDFPARRITLNLAPA
DLPKDGGRFDLAIALGILAASGQLPGTTLDGLECLGELALSGAIRPVRGVLPAALAARDARHVLVVPKENAE
EASLASGLTVFAVDHLLEIAGHLSGQAPLLPYQARGLLRAPFPYPDLAEVQGQAAAKRALLVAAAGAHNLLL
SGPPGTGKTLLASRLPGLLPALDEDEALEVAAIHSVASHVPLRHWPQRPFRQPHHSASAPALVGGGSRPQPG
EITLAHQGVLFLDELPEFERKVLEVLREPLESGEIVIARANGRVRFPARFQLVAAMNPCPCGYLGDPSGRCR
CTPEQVQRYRGKLSGPLLDRIDLHVSVLRESTSLQPGHGETATAEISERVGAARQRQLARQGCANAHLDLQA
MHRNCALAEADRRWLEAAGERLELSLRALHRILKVARTLADLERIDAIERRHLAEALQYRATTST*
AnnotationID:860GeneID:851
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 09:09:13
Gene Name:
Confidence Code:3
GeneProduct:putative magnesium chelatase
Cell Localization:()
Synonyms:PA5290
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:putative competence related protein
Functional Category Confidence Code:5
COGs:COG0606,pfam01078
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70804.1|AE016724_3 (AE016793) magnesium chelatase, subunit D/I family [Pseudomonas
           putida KT2440]
          Length = 496

 Score =  729 bits (1883), Expect = 0.0
 Identities = 371/496 (74%), Positives = 413/496 (83%)

>emb|CAD84104.1| (BX321856) probable Mg(2+) chelatase family protein [Nitrosomonas
           europaea ATCC 19718]
          Length = 500

 Score =  533 bits (1373), Expect = e-150
 Identities = 283/496 (57%), Positives = 352/496 (70%), Gaps = 5/496 (1%)








 
Structural Features:
COG0606, COG0606, Predicted ATPase with chaperone activity 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 490 residues, 100.0% aligned
Score =  615 bits (1588), Expect = 3e-177
Identities = 293/490 (59%), Positives = 350/490 (71%), Gaps = 7/490 (1%)

pfam01078, Mg_chelatase, Magnesium chelatase, subunit ChlI.
CD-Length = 325 residues, 100.0% aligned
Score =  211 bits (538), Expect = 2e-55
Identities = 107/330 (32%), Positives = 157/330 (47%), Gaps = 10/330 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1705




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18847




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34804




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:851_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:851
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1535
                           PA5290_tr
                           translation of PA5290
                           497
                           98.99
                           99.19
                           0
                           2490.0
     

     
     
55358
                           gb|AAG08675.1|AE004941_8
                           (AE004941) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           497
                           98.99
                           99.19
                           0
                           2490.0
     

     
     
55359
                           gb|AAN70804.1|AE016724_3
                           (AE016793) magnesium chelatase, subunit D/I family [Pseudomonas putida KT2440]
                           499
                           75.35
                           83.76
                           5
                           1889.0
     

     
     
55361
                           gb|AAQ61662.1|
                           (AE016924) probable competence protein ComM [Chromobacterium violaceum ATCC 12472]
                           503
                           58.05
                           71.37
                           9
                           1396.0
     

     
     
55360
                           gb|AAM43105.1|
                           (AE012508) competence related protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           513
                           57.89
                           70.17
                           23
                           1393.0
     

     






      

          
GC ORFID: 43853How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5290Glimmer Score: 

          
Start: 5490464Stop: 5491957

          
Length: 1494


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5290 translation of PA5290Homolog Bit Score 963.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3129 (ORF: BLASTX 746.0), t_PA5290 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCCTGGCGATTGTCCACAGCCGAGCCCAGGTCGGCGTCGAAGCCCCCTGCGTCAGCGTCGAGGCGCAC 
CTGGCCAACGGCCTGCCTTCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTGCGCGAGAGCAAGGACCGC 
GTGCGCAGCGCCCTGCTCAATGCCGGTTTCGACTTCCCCGCGCGGCGCATCACCCTCAACCTCGCCCCCGCC 
GACCTGCCCAAGGACGGCGGTCGCTTCGACCTGGCCATCGCACTCGGCATCCTCGCCGCCAGCGGCCAGTTG 
CCCGGCACCACCCTCGACGGCCTGGAGTGCCTTGGCGAACTGGCCCTGTCCGGGGCGATCCGGCCAGTGCGA 
GGCGTATTGCCGGCCGCGCTGGCGGCGCGCGACGCAAGGCACGTTCTGGTGGTACCGAAGGAAAATGCCGAA 
GAGGCCAGCCTGGCCAGCGGGCTGACGGTGTTCGCCGTGGACCACCTGCTGGAGATCGCCGGACACCTCTCC 
GGCCAGGCCCCGCTGCTGCCCTACCAGGCCCGCGGCCTGCTCCGCGCGCCCTTCCCTTATCCAGACCTGGCC 
GAGGTCCAGGGCCAGGCCGCCGCCAAGCGCGCCCTGCTGGTGGCCGCCGCCGGCGCGCACAACCTGTTGCTC 
AGCGGCCCGCCGGGCACCGGCAAGACCCTCCTGGCCAGCCGCCTGCCCGGCCTGCTGCCGGCGCTCGACGAG 
GACGAGGCCCTGGAGGTCGCAGCGATCCATTCGGTGGCCAGCCACGTCCCCCTCAGGCACTGGCCGCAGCGA 
CCGTTCCGCCAGCCGCACCACTCCGCCTCCGCGCCGGCCCTGGTCGGCGGCGGCAGCCGCCCGCAGCCGGGC 
GAGATCACCCTGGCGCACCAGGGCGTGCTGTTCCTCGACGAACTGCCGGAGTTCGAGCGCAAGGTCCTGGAG 
GTCCTGCGCGAGCCGCTGGAAAGCGGCGAGATCGTCATTGCCCGGGCCAACGGCCGGGTACGTTTCCCGGCG 
CGCTTCCAACTGGTGGCGGCGATGAATCCCTGTCCCTGTGGCTACCTCGGCGATCCCAGCGGCCGCTGCCGC 
TGCACCCCGGAACAGGTCCAGCGCTACCGGGGCAAGCTGTCCGGACCGCTGCTCGATCGCATCGACCTGCAC 
GTCAGCGTGCTCCGCGAAAGCACCAGCCTGCAGCCAGGACACGGCGAAACCGCTACCGCCGAGATCAGCGAA 
CGGGTTGGCGCCGCACGGCAACGGCAACTGGCCCGCCAGGGCTGCGCCAATGCCCATCTCGACCTCCAGGCG 
ATGCACCGCAATTGTGCACTCGCCGAAGCGGACCGCCGCTGGCTGGAGGCTGCCGGAGAGCGCCTGGAACTT 
TCCTTGCGCGCCTTGCATCGCATACTCAAGGTGGCCCGGACGCTGGCCGACCTGGAGCGCATCGATGCCATC 
GAACGCCGGCACCTGGCGGAAGCCCTGCAGTATCGGGCAACGACCTCCACGTGA