ViewGene
Locus Name:
GeneID:
Location:

GeneID:850
TrivialName: PA14_65390
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65390
PAO1 Ortholog Locus:PA4949
Sequence Length:1509
Protein Length:502
Start: 5826470
Stop: 5824962
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08334.1|AE004907_12 (AE004907) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 496/502 (98%), Positives = 498/502 (99%)
Sequence:
ATGACCATGACCTTCCAGCACGACGACCTGCCACTCGCCCTCTATTCCGCCGCCCAGGTGCGCGACCTGGAT
GCGCGCCTGATCGCTGCCGGCACGCCGGGCTTCGAACTCATGCAGCGCGCCGCCCACGCCGCCTGGCGTGCC
TTGCGCCGCCGTTGGCCGGAGGCCGCGGCGCTGACGGTGCTCGCCGGGCACGGCAACAATGCCGGCGACGGC
TACCTGATCGCGGCGCTGGCGCAACGTGCAGGTTGGCGAGTGCGGGTGCTGGCGGTCGCGGCGCCGCAGCGG
CTTGCCGGCGACGCGGCGCAGGCGCATGCCGCCGCGCTGGCGACCGGGGTCGTGGTGGAGCCCTGGAGCGAG
TGCGCCGTGCTCGAGGGCGTAGTAGTGGATGCATTGCTCGGCACCGGCCTGGCAGGTGCCGTGCGCGAGCCC
TTTGCGCAGGCCATCCGCCTGGCCAACGCCGCCGACCTGCCGGTGCTGGCGGTGGATATTCCTTCCGGCTTG
AGCGCCGACACCGGCGCGGTATTGGGGGAAGCGATCAGGGCGGATCTGACAGTGACTTTCATCGGCCTGAAG
ATCGGGCTGTTCACTGGCGAGGCGCCGGCACGGGTCGGCGAGCTGGTGTTCGACGAACTCGGTAGCGACGCC
GTCGTGCTGCAAGCGCTCCAGCCCCGGGCTCGCCGCCTGGCGCGAAATGCCCTGCCGAGGCTGGCAGCGCGG
CCGCGGACCGCACACAAGGGGCTGTTCGGCCACCTGCTGGTGGTCGGCGGCGACACCGGCATGGGCGGGGCC
GTGCTACTGGCCGCGGAAAGCGCCCTGCGCTGCGGCGCCGGGCTGGTCTCGGCGGCGACCCGCGTCGAACAT
GTGCCGGCGTTGCTGGGCCGTTGTCCCGAGGTCATGGCCCATGGCGTGGCGTCGGCGAACCAACTGCTGGCC
CTTGCCGAACGCGCCAGCGTGCTGGTGCTCGGTCCCGGGCTTGGCCAGCGCGCCTGGGGTCGCAGCCTGCTG
AGCGCTGTCCGGTCGCGACCGTTGCCGCAGGTCTGGGATGCCGACGCGTTGAACCTGCTGGCCCTGGAACCG
GTCGGAGCAGGGCCGCAGACATGGATTCTGACGCCGCATCCCGGCGAGGCCGCGCGCCTGTTGGGTCGCTCG
ACCGCCGAGGTGCAGGCGGATCGTCCGGCGGCGGCGCTGGAACTGGCGCGTCGCTACCAGGCGGTGGTGGTG
CTGAAGGGCGCCGGCAGCCTGATCGCCGCGCCCGACGGACGACTCGCCGTCTGTTCCCAGGGGCATCCGGCG
ATGGCCGGCGCCGGCCTGGGTGACGTGCTGTCGGGCATCACCGGTGCCTTGCTGGCCCAGCGCGTGGAGGCG
TTCGAGGCGGCCTGCCTGGCTGTCTGGCTGCATGCCGCCGCCGGTGAGCGGCTCGGCGCCCAGGGTCGCGGG
CTGGCGGCGACCGATCTCATACCTACCGTTCGTCAGTTGCTCGAGGAGTGCAGTCCGTGTCTGAAGTGA
Translation:
MTMTFQHDDLPLALYSAAQVRDLDARLIAAGTPGFELMQRAAHAAWRALRRRWPEAAALTVLAGHGNNAGDG
YLIAALAQRAGWRVRVLAVAAPQRLAGDAAQAHAAALATGVVVEPWSECAVLEGVVVDALLGTGLAGAVREP
FAQAIRLANAADLPVLAVDIPSGLSADTGAVLGEAIRADLTVTFIGLKIGLFTGEAPARVGELVFDELGSDA
VVLQALQPRARRLARNALPRLAARPRTAHKGLFGHLLVVGGDTGMGGAVLLAAESALRCGAGLVSAATRVEH
VPALLGRCPEVMAHGVASANQLLALAERASVLVLGPGLGQRAWGRSLLSAVRSRPLPQVWDADALNLLALEP
VGAGPQTWILTPHPGEAARLLGRSTAEVQADRPAAALELARRYQAVVVLKGAGSLIAAPDGRLAVCSQGHPA
MAGAGLGDVLSGITGALLAQRVEAFEAACLAVWLHAAAGERLGAQGRGLAATDLIPTVRQLLEECSPCLK*
AnnotationID:859GeneID:850
AnnotatorUID: diggins
Modification Date/Time: 2005-03-13 14:02:38
Gene Name:
Confidence Code:3
GeneProduct:putative carbohydrate kinase
Cell Localization:()
Synonyms:yjeF
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0063,pfam01256,pfam03853
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58375.1| (AE016873) YjeF-related protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 496

 Score =  630 bits (1626), Expect = e-180
 Identities = 328/492 (66%), Positives = 383/492 (77%), Gaps = 4/492 (0%)








 
Structural Features:
COG0063, COG0063, Predicted sugar kinase [Carbohydrate transport and metabolism]
CD-Length = 284 residues,  94.4% aligned
Score =  234 bits (598), Expect = 2e-62
Identities = 129/268 (48%), Positives = 159/268 (59%), Gaps = 4/268 (1%)

pfam01256, Carb_kinase, Carbohydrate kinase.
CD-Length = 241 residues,  99.2% aligned
Score =  176 bits (447), Expect = 6e-45
Identities = 103/241 (42%), Positives = 136/241 (56%), Gaps = 4/241 (1%)

pfam03853, YjeF_N, YjeF-related protein N-terminus.
CD-Length = 169 residues,  99.4% aligned
Score =  135 bits (342), Expect = 9e-33
Identities = 75/169 (44%), Positives = 102/169 (60%), Gaps = 6/169 (3%)







   
Genomic Context:






   
Comment:


















    ReferenceID:1703




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18845




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35086




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:850_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:850
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1534
                           PA4949_tr
                           translation of PA4949
                           502
                           98.80
                           99.20
                           0
                           2489.0
     

     
     
55323
                           gb|AAG08334.1|AE004907_12
                           (AE004907) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           502
                           98.80
                           99.20
                           0
                           2489.0
     

     
     
55324
                           gb|AAO58375.1|
                           (AE016873) YjeF-related protein [Pseudomonas syringae pv. tomato str. DC3000]
                           502
                           65.93
                           76.89
                           6
                           1628.0
     

     
     
55326
                           gb|AAO29731.1|
                           (AE012560) conserved hypothetical protein [Xylella fastidiosa Temecula1]
                           509
                           47.93
                           59.72
                           20
                           1022.0
     

     
     
55325
                           gb|AAO90601.1|
                           (AE016963) conserved hypothetical protein [Coxiella burnetii RSA 493]
                           506
                           46.64
                           61.46
                           22
                           1080.0
     

     






      

          
GC ORFID: 43852How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4949Glimmer Score: 

          
Start: 5090151Stop: 5088643

          
Length: 1509


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4949 translation of PA4949Homolog Bit Score 963.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3425 (ORF: BLASTX 612.0), t_PA4949 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCATGACCTTCCAGCACGACGACCTGCCACTCGCCCTCTATTCCGCCGCCCAGGTGCGCGACCTGGAT 
GCGCGCCTGATCGCTGCCGGCACGCCGGGCTTCGAACTCATGCAGCGCGCCGCCCACGCCGCCTGGCGTGCC 
TTGCGCCGCCGTTGGCCGGAGGCCGCGGCGCTGACGGTGCTCGCCGGGCACGGCAACAATGCCGGCGACGGC 
TACCTGATCGCGGCGCTGGCGCAACGTGCAGGTTGGCGAGTGCGGGTGCTGGCGGTCGCGGCGCCGCAGCGG 
CTTGCCGGCGACGCGGCGCAGGCGCATGCCGCCGCGCTGGCGACCGGGGTCGTGGTGGAGCCCTGGAGCGAG 
TGCGCCGTGCTCGAGGGCGTAGTAGTGGATGCATTGCTCGGCACCGGCCTGGCAGGTGCCGTGCGCGAGCCC 
TTTGCGCAGGCCATCCGCCTGGCCAACGCCGCCGACCTGCCGGTGCTGGCGGTGGATATTCCTTCCGGCTTG 
AGCGCCGACACCGGCGCGGTATTGGGGGAAGCGATCAGGGCGGATCTGACAGTGACTTTCATCGGCCTGAAG 
ATCGGGCTGTTCACTGGCGAGGCGCCGGCACGGGTCGGCGAGCTGGTGTTCGACGAACTCGGTAGCGACGCC 
GTCGTGCTGCAAGCGCTCCAGCCCCGGGCTCGCCGCCTGGCGCGAAATGCCCTGCCGAGGCTGGCAGCGCGG 
CCGCGGACCGCACACAAGGGGCTGTTCGGCCACCTGCTGGTGGTCGGCGGCGACACCGGCATGGGCGGGGCC 
GTGCTACTGGCCGCGGAAAGCGCCCTGCGCTGCGGCGCCGGGCTGGTCTCGGCGGCGACCCGCGTCGAACAT 
GTGCCGGCGTTGCTGGGCCGTTGTCCCGAGGTCATGGCCCATGGCGTGGCGTCGGCGAACCAACTGCTGGCC 
CTTGCCGAACGCGCCAGCGTGCTGGTGCTCGGTCCCGGGCTTGGCCAGCGCGCCTGGGGTCGCAGCCTGCTG 
AGCGCTGTCCGGTCGCGACCGTTGCCGCAGGTCTGGGATGCCGACGCGTTGAACCTGCTGGCCCTGGAACCG 
GTCGGAGCAGGGCCGCAGACATGGATTCTGACGCCGCATCCCGGCGAGGCCGCGCGCCTGTTGGGTCGCTCG 
ACCGCCGAGGTGCAGGCGGATCGTCCGGCGGCGGCGCTGGAACTGGCGCGTCGCTACCAGGCGGTGGTGGTG 
CTGAAGGGCGCCGGCAGCCTGATCGCCGCGCCCGACGGACGACTCGCCGTCTGTTCCCAGGGGCATCCGGCG 
ATGGCCGGCGCCGGCCTGGGTGACGTGCTGTCGGGCATCACCGGTGCCTTGCTGGCCCAGCGCGTGGAGGCG 
TTCGAGGCGGCCTGCCTGGCTGTCTGGCTGCATGCCGCCGCCGGTGAGCGGCTCGGCGCCCAGGGTCGCGGG 
CTGGCGGCGACCGATCTCATACCTACCGTTCGTCAGTTGCTCGAGGAGTGCAGTCCGTGTCTGAAGTGA