ViewGene
Locus Name:
GeneID:
Location:

GeneID:848
TrivialName: PA14_55770
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55770
PAO1 Ortholog Locus:PA4292
Sequence Length:1470
Protein Length:489
Start: 4978489
Stop: 4979958
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07680.1|AE004845_6 (AE004845) probable phosphate transporter [Pseudomonas aeruginosa PAO1]
Identities = 489/489 (100%), Positives = 489/489 (100%)
Sequence:
ATGTTCGATCTTTTCAGCGGGCTCGATGCCTGGGTGGGTATCAGCCTGGTGCTGGCCCTGGCCTTCGTCCTC
ACCTTCGAGTTCATCAACGGCTTCCACGACACTGCCAACGCGGTGGCCACCGTCATCTACACCAAAGCGATG
TCCCCCTACCGGGCGGTGATGCTCTCCGGTGTGTTCAACTTCCTCGGCGTGCTGCTCGGCGGTGTCGGCGTA
GCCTACGCCATCGTTCACCTGCTGCCGGTGGAACTGCTGATCAACGTGAACACCGGCCATGGCCTGGCGATG
GTCTTCTCCCTGCTCGCCGCCGCCATCGCCTGGAACCTCGGCACCTGGTACTTCGGCATCCCGGCCTCCAGC
TCGCACACCCTGATCGGCTCGATCCTCGGTGTCGGCCTGGCCAATGCGCTGATCACCGACGTGCCGCTGGCC
GAAGGGATCAACTGGCAGAAGGCGATCGACATCGGCCTGTCGCTGATCTTCTCGCCGCTGGCCGGCTTCATG
GTCGCCGCGCTGGTCCTGCTCGGACTGAAGTGGTGGCGTCCGCTGTCGAAGATGCACAAGACCCCGGAAACC
CGTCGCGAACTCGACGAGAAGAAGCACCCGCCGTTCTGGAACCGCCTGGTGCTGGTGCTTTCCGCCATGGCG
GTGAGCTTCGTCCATGGCTCCAACGACGGCCAGAAGGGTATCGGCCTGATCATGCTGGTACTGATCGGCATC
GTCCCGGCCAAGTTCGTCCTCGACCTGAACAGCACCACCTACCAGATCGAGCGCACCCGCGACGCCGCCCTG
CACCTCAGTCAGTTCTACCAGCGCCATACCGATACCCTCGGCGACATGCTGGCCCTGGGCAAGAGCAATGGC
AGCGAGATGCCGCAGTTCTACCGCTGCGATCCGAAACAGACCGAGCCGACCATCAACGCGCTGCTCCGCGAC
CTGCGCGGCGTGCCCAGCTACAACGACCTGGACGCCGACGAGCGCGTGCAGGTGCGTCGCTACCTGCTGTGC
CTGGACGACACCGCGAAGAAGGTCGGCAAGCTGTCCGACCTGCCGGCGCGGGAGAAGGCCGACCTGGAGAAG
CTACGCAAGGACCTGACCGCGACCACCGAATACGCGCCGTTCTGGGTCATCATCGCGGTGGCCCTGGCTCTC
GGCATCGGCACCATGGTCGGCTGGAAGCGCGTAGTGCTCACCGTCGGCGAGAAGATCGGCAAGCAGGGCATG
ACCTACGCCCAGGGCATGAGCGCGCAGATCACCGCCGCCGCCGCCATCGGCATGGCCAACATCTACAGCCTG
CCGGTGTCCACCACCCACGTGCTGTCCTCCGGCGTGGCCGGGACCATGGTGGCGAACAAGAGCGGCCTGCAC
GGCGGCACCGTGCGCAACATCCTGATGGCCTGGGTACTCACCCTGCCGACTTCGATGGCGCTGTCCGCCGGC
CTGTTCTGGCTGGCCTCGCAATTCATCTGA
Translation:
MFDLFSGLDAWVGISLVLALAFVLTFEFINGFHDTANAVATVIYTKAMSPYRAVMLSGVFNFLGVLLGGVGV
AYAIVHLLPVELLINVNTGHGLAMVFSLLAAAIAWNLGTWYFGIPASSSHTLIGSILGVGLANALITDVPLA
EGINWQKAIDIGLSLIFSPLAGFMVAALVLLGLKWWRPLSKMHKTPETRRELDEKKHPPFWNRLVLVLSAMA
VSFVHGSNDGQKGIGLIMLVLIGIVPAKFVLDLNSTTYQIERTRDAALHLSQFYQRHTDTLGDMLALGKSNG
SEMPQFYRCDPKQTEPTINALLRDLRGVPSYNDLDADERVQVRRYLLCLDDTAKKVGKLSDLPAREKADLEK
LRKDLTATTEYAPFWVIIAVALALGIGTMVGWKRVVLTVGEKIGKQGMTYAQGMSAQITAAAAIGMANIYSL
PVSTTHVLSSGVAGTMVANKSGLHGGTVRNILMAWVLTLPTSMALSAGLFWLASQFI*
AnnotationID:857GeneID:848
AnnotatorUID: diggins
Modification Date/Time: 2004-12-22 12:12:12
Gene Name:
Confidence Code:3
GeneProduct:putative probable phosphate transporter
Cell Localization:()
Synonyms:pitA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66996.1|AE016328_1 (AE016779) low-affinity inorganic phosphate transporter
           [Pseudomonas putida KT2440]
          Length = 490

 Score =  829 bits (2141), Expect = 0.0
 Identities = 411/489 (84%), Positives = 449/489 (91%)

>gb|AAO57763.1| (AE016871) phosphate transporter family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 490

 Score =  816 bits (2108), Expect = 0.0
 Identities = 404/487 (82%), Positives = 445/487 (91%)

>emb|CAE31893.1| (BX640441) probable phosphate transporter [Bordetella
           bronchiseptica]
          Length = 491

 Score =  785 bits (2027), Expect = 0.0
 Identities = 393/487 (80%), Positives = 435/487 (89%), Gaps = 1/487 (0%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:1699




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18841




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36654




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:848_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:848
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1531
                           PA4292_tr
                           translation of PA4292
                           489
                           99.99
                           99.99
                           0
                           2492.0
     

     
     
55266
                           gb|AAG07680.1|AE004845_6
                           (AE004845) probable phosphate transporter [Pseudomonas aeruginosa PAO1]
                           489
                           99.99
                           99.99
                           0
                           2492.0
     

     
     
55267
                           gb|AAN66996.1|AE016328_1
                           (AE016779) low-affinity inorganic phosphate transporter [Pseudomonas putida KT2440]
                           490
                           83.87
                           91.63
                           1
                           2141.0
     

     
     
55268
                           gb|AAO57763.1|
                           (AE016871) phosphate transporter family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           490
                           82.44
                           91.02
                           1
                           2108.0
     

     
     
55269
                           emb|CAE31893.1|
                           (BX640441) probable phosphate transporter [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           491
                           80.04
                           88.59
                           2
                           2026.0
     

     






      

          
GC ORFID: 43850How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4292Glimmer Score: 

          
Start: 4242165Stop: 4243634

          
Length: 1470


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4292 translation of PA4292Homolog Bit Score 964.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6184 (ORF: BLASTX 817.0), t_PA4292 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCGATCTTTTCAGCGGGCTCGATGCCTGGGTGGGTATCAGCCTGGTGCTGGCCCTGGCCTTCGTCCTC 
ACCTTCGAGTTCATCAACGGCTTCCACGACACTGCCAACGCGGTGGCCACCGTCATCTACACCAAAGCGATG 
TCCCCCTACCGGGCGGTGATGCTCTCCGGTGTGTTCAACTTCCTCGGCGTGCTGCTCGGCGGTGTCGGCGTA 
GCCTACGCCATCGTTCACCTGCTGCCGGTGGAACTGCTGATCAACGTGAACACCGGCCATGGCCTGGCGATG 
GTCTTCTCCCTGCTCGCCGCCGCCATCGCCTGGAACCTCGGCACCTGGTACTTCGGCATCCCGGCCTCCAGC 
TCGCACACCCTGATCGGCTCGATCCTCGGTGTCGGCCTGGCCAATGCGCTGATCACCGACGTGCCGCTGGCC 
GAAGGGATCAACTGGCAGAAGGCGATCGACATCGGCCTGTCGCTGATCTTCTCGCCGCTGGCCGGCTTCATG 
GTCGCCGCGCTGGTCCTGCTCGGACTGAAGTGGTGGCGTCCGCTGTCGAAGATGCACAAGACCCCGGAAACC 
CGTCGCGAACTCGACGAGAAGAAGCACCCGCCGTTCTGGAACCGCCTGGTGCTGGTGCTTTCCGCCATGGCG 
GTGAGCTTCGTCCATGGCTCCAACGACGGCCAGAAGGGTATCGGCCTGATCATGCTGGTACTGATCGGCATC 
GTCCCGGCCAAGTTCGTCCTCGACCTGAACAGCACCACCTACCAGATCGAGCGCACCCGCGACGCCGCCCTG 
CACCTCAGTCAGTTCTACCAGCGCCATACCGATACCCTCGGCGACATGCTGGCCCTGGGCAAGAGCAATGGC 
AGCGAGATGCCGCAGTTCTACCGCTGCGATCCGAAACAGACCGAGCCGACCATCAACGCGCTGCTCCGCGAC 
CTGCGCGGCGTGCCCAGCTACAACGACCTGGACGCCGACGAGCGCGTGCAGGTGCGTCGCTACCTGCTGTGC 
CTGGACGACACCGCGAAGAAGGTCGGCAAGCTGTCCGACCTGCCGGCGCGGGAGAAGGCCGACCTGGAGAAG 
CTACGCAAGGACCTGACCGCGACCACCGAATACGCGCCGTTCTGGGTCATCATCGCGGTGGCCCTGGCTCTC 
GGCATCGGCACCATGGTCGGCTGGAAGCGCGTAGTGCTCACCGTCGGCGAGAAGATCGGCAAGCAGGGCATG 
ACCTACGCCCAGGGCATGAGCGCGCAGATCACCGCCGCCGCCGCCATCGGCATGGCCAACATCTACAGCCTG 
CCGGTGTCCACCACCCACGTGCTGTCCTCCGGCGTGGCCGGGACCATGGTGGCGAACAAGAGCGGCCTGCAC 
GGCGGCACCGTGCGCAACATCCTGATGGCCTGGGTACTCACCCTGCCGACTTCGATGGCGCTGTCCGCCGGC 
CTGTTCTGGCTGGCCTCGCAATTCATCTGA