ViewGene
Locus Name:
GeneID:
Location:

GeneID:847
TrivialName: PA14_33410
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33410
PAO1 Ortholog Locus:PA2420
Sequence Length:1419
Protein Length:472
Start: 2940867
Stop: 2939449
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05808.1|AE004669_5 (AE004669) probable porin [Pseudomonas aeruginosa PAO1]
Identities = 469/472 (99%), Positives = 470/472 (99%) with PA2420 of PAO1.
Sequence:
ATGCCTGATTCCTCCATGAAGCGCGGGGCTACGCTCTGCCTTGCCCTTGCCATAGGTCCGGGCTCGCTCCTG
GCCGACGACTCCCTGGGCCATCGCGACAACATCAGCACCGGCCTGAACCAGCGGCAGAAAGCCGAAATGAAG
GTGCCGCCGGGCTTCGTCGAAGGCTCGACGCTGAACGGTTTCCTCCGCAACTACTATTTCGCCCGCGACAAC
CACGACACCCCGTCCCGCCGCGACCAGCGCGAATGGGCCCAGGGCCTGATGCTGTCGTTCCGCTCCGGCTAT
ACCGACACGCCGATAGGCATCGGCCTGGATGCGCACGCCTTCTACGGCCTGCGCCTGGACGGCGGTGGCGGC
AGCGGCGGTGCCGGCGTGCTGCCGCTGGACTCCGCCGGTCGCCCCGCCGACAGCTTCTCGGCGGCCGGCGCG
GCCCTCAAGCTGCGCGGCCTGGACAGCCTGCTGAAGATCGGCGACCAGTTGCTGGAGAACCCGGTGATCGCC
AGCGGCGTCAGTCGCATGGTGCCGCAGAGCTACCGTGGCGTGACCCTGAAGAACTACCATTTCCGCGCGCTC
GAACTGGACGCCGGCTTCGTCGAAGCCACCCGCCTGCGCAACCAGAGCGGCCATAGTCATCTCACCAGCGGC
TACGGCAACGGCACCAAGGGCGGTATCGCCGCCGATCGCGAAAGCCCGCACATCGCCTGGCTGGGCGCCAGC
TACAGCGCCCCCGGCGGCAGCCAGGCGACGCTCTACAGCGGCCGCCTGGCGGATATCTGGAACCAGCACTAC
CTCGGCCTCAGCCAGCCGTGGCGGCTTTCCAGCCAATTGACCCTGACGCCCTGGCTGCATTACTACAAGACC
CGCGACCAGGGCCGCAGCCAGCTCGGCCGGATCGACAACGACCTCTACAACGCCGGGCTGACCCTGGCCGGC
GGCGGCCAGTCGCTGAGCCTCAGCCTGCAAAAGGTCGATGGCGACACCCCGTTCGACTTCATCGCGCAGAAC
GACCGGACCTTCCTCTACGAAAGCAACGCCATGCAGTACGCCGACTTCAACGGCCCCGGCGAGCGCTCGTGG
AAGATCCAGTACCAGGCCAGCCTGGCCTTCCTCGCCGCCCCGGACTGGCAATTCGGCGCCGCCTACGGCCGT
GGCCAGGCCGACCTGACCCGGGTCGACCCGGACAGCGCGGGCTACGGCTACCTCTACAACCCCAATGGCAAG
AACGCCCAGCACTGGGAACGCGACCTGTCGCTGCGCTATGCCTTCCCCGCCGGCCCGGCCAAGGGCCTCAGC
GTGACCCTGCGCTGGGCCACCCACCGCCCCGGCGAAGGCTACACCGCCCCCGGCAACACCCGCGGCAACTCC
AGCTCCGACGAATACCGGGTGGTGGTCGACTACCCGATCAGGTTGCTCTGA
Translation:
MPDSSMKRGATLCLALAIGPGSLLADDSLGHRDNISTGLNQRQKAEMKVPPGFVEGSTLNGFLRNYYFARDN
HDTPSRRDQREWAQGLMLSFRSGYTDTPIGIGLDAHAFYGLRLDGGGGSGGAGVLPLDSAGRPADSFSAAGA
ALKLRGLDSLLKIGDQLLENPVIASGVSRMVPQSYRGVTLKNYHFRALELDAGFVEATRLRNQSGHSHLTSG
YGNGTKGGIAADRESPHIAWLGASYSAPGGSQATLYSGRLADIWNQHYLGLSQPWRLSSQLTLTPWLHYYKT
RDQGRSQLGRIDNDLYNAGLTLAGGGQSLSLSLQKVDGDTPFDFIAQNDRTFLYESNAMQYADFNGPGERSW
KIQYQASLAFLAAPDWQFGAAYGRGQADLTRVDPDSAGYGYLYNPNGKNAQHWERDLSLRYAFPAGPAKGLS
VTLRWATHRPGEGYTAPGNTRGNSSSDEYRVVVDYPIRLL*
AnnotationID:856GeneID:847
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 14:02:06
Gene Name:
Confidence Code:3
GeneProduct:probable porin
Cell Localization:(6) Outer membrane protein
Synonyms:PA2420, opdJ
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:1697




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18839




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:847
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1529
                           PA2420_tr
                           translation of PA2420
                           472
                           99.36
                           99.57
                           0
                           2492.0
     

     
     
55262
                           gb|AAG05808.1|AE004669_5
                           (AE004669) probable porin [Pseudomonas aeruginosa PAO1]
                           472
                           99.36
                           99.57
                           0
                           2492.0
     

     
     
1530
                           PA0162_tr
                           translation of PA0162
                           482
                           44.81
                           58.92
                           48
                           1054.0
     

     
     
55263
                           gb|AAG03552.1|AE004454_4
                           (AE004454) probable porin [Pseudomonas aeruginosa PAO1]
                           482
                           44.81
                           58.92
                           48
                           1054.0
     

     
     
55264
                           gb|AAN66424.1|AE016270_1
                           (AE016777) porin, putative [Pseudomonas putida KT2440]
                           478
                           42.46
                           57.11
                           40
                           949.0
     

     






      

          
GC ORFID: 43849How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2420Glimmer Score: 

          
Start: 2013049Stop: 2014467

          
Length: 1419


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2420 translation of PA2420Homolog Bit Score 964.0

          
Other Homologs:  t_PA0162 (ORF: BLASTX 406.0), t_PA2420 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTGATTCCTCCATGAAGCGCGGGGCTACGCTCTGCCTTGCCCTTGCCATAGGTCCGGGCTCGCTCCTG 
GCCGACGACTCCCTGGGCCATCGCGACAACATCAGCACCGGCCTGAACCAGCGGCAGAAAGCCGAAATGAAG 
GTGCCGCCGGGCTTCGTCGAAGGCTCGACGCTGAACGGTTTCCTCCGCAACTACTATTTCGCCCGCGACAAC 
CACGACACCCCGTCCCGCCGCGACCAGCGCGAATGGGCCCAGGGCCTGATGCTGTCGTTCCGCTCCGGCTAT 
ACCGACACGCCGATAGGCATCGGCCTGGATGCGCACGCCTTCTACGGCCTGCGCCTGGACGGCGGTGGCGGC 
AGCGGCGGTGCCGGCGTGCTGCCGCTGGACTCCGCCGGTCGCCCCGCCGACAGCTTCTCGGCGGCCGGCGCG 
GCCCTCAAGCTGCGCGGCCTGGACAGCCTGCTGAAGATCGGCGACCAGTTGCTGGAGAACCCGGTGATCGCC 
AGCGGCGTCAGTCGCATGGTGCCGCAGAGCTACCGTGGCGTGACCCTGAAGAACTACCATTTCCGCGCGCTC 
GAACTGGACGCCGGCTTCGTCGAAGCCACCCGCCTGCGCAACCAGAGCGGCCATAGTCATCTCACCAGCGGC 
TACGGCAACGGCACCAAGGGCGGTATCGCCGCCGATCGCGAAAGCCCGCACATCGCCTGGCTGGGCGCCAGC 
TACAGCGCCCCCGGCGGCAGCCAGGCGACGCTCTACAGCGGCCGCCTGGCGGATATCTGGAACCAGCACTAC 
CTCGGCCTCAGCCAGCCGTGGCGGCTTTCCAGCCAATTGACCCTGACGCCCTGGCTGCATTACTACAAGACC 
CGCGACCAGGGCCGCAGCCAGCTCGGCCGGATCGACAACGACCTCTACAACGCCGGGCTGACCCTGGCCGGC 
GGCGGCCAGTCGCTGAGCCTCAGCCTGCAAAAGGTCGATGGCGACACCCCGTTCGACTTCATCGCGCAGAAC 
GACCGGACCTTCCTCTACGAAAGCAACGCCATGCAGTACGCCGACTTCAACGGCCCCGGCGAGCGCTCGTGG 
AAGATCCAGTACCAGGCCAGCCTGGCCTTCCTCGCCGCCCCGGACTGGCAATTCGGCGCCGCCTACGGCCGT 
GGCCAGGCCGACCTGACCCGGGTCGACCCGGACAGCGCGGGCTACGGCTACCTCTACAACCCCAATGGCAAG 
AACGCCCAGCACTGGGAACGCGACCTGTCGCTGCGCTATGCCTTCCCCGCCGGCCCGGCCAAGGGCCTCAGC 
GTGACCCTGCGCTGGGCCACCCACCGCCCCGGCGAAGGCTACACCGCCCCCGGCAACACCCGCGGCAACTCC 
AGCTCCGACGAATACCGGGTGGTGGTCGACTACCCGATCAGGTTGCTCTGA