ViewGene
Locus Name:
GeneID:
Location:

GeneID:846
TrivialName: PA14_50220
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50220
PAO1 Ortholog Locus:PA1097
Sequence Length:1473
Protein Length:490
Start: 4462344
Stop: 4460872
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04486.1|AE004540_6 (AE004540) transcriptional regulator FleQ [Pseudomonas aeruginosa PAO1]
Identities = 490/490 (100%), Positives = 490/490 (100%)
Sequence:
ATGTGGCGCGAAACCAAACTCTTGCTGATTGACGACAATCTCGATCGCAGTCGCGACCTGGCAGTCATTCTC
AACTTCCTCGGCGAAGATCAGCTGACCTGCAACAGCGAGGATTGGCGAGAGGTAGCGGCGGGCCTGAGCAAC
AGTCGCGAAGCCCTGTGCGTGCTGCTCGGCAGCGTCGAGTCGAAGGGCGGGGCGGTAGAGCTGCTGAAGCAA
CTGGCCAGTTGGGACGAGTACCTGCCGATCCTGCTGATCGGCGAGCCGGCCCCGGCCGACTGGCCGGAGGAG
CTGCGCCGCCGGGTGCTCGCCAGCCTGGAGATGCCGCCCAGCTACAACAAGCTGCTCGATTCCCTGCATCGC
GCCCAGGTCTACCGCGAGATGTACGACCAGGCCCGCGAGCGCGGCCGCTCCCGCGAGCCGAACCTGTTCCGC
AGCCTGGTCGGCACCAGCCGGGCGATCCAGCAGGTGCGGCAGATGATGCAGCAGGTCGCCGATACCGATGCC
AGCGTGCTGATCCTCGGCGAGTCCGGCACCGGCAAGGAAGTGGTGGCGCGCAACCTGCATTACCATTCCAAG
CGCCGCGAGGGGCCCTTCGTCCCGGTGAACTGCGGGGCGATCCCGGCGGAACTGCTGGAAAGCGAACTGTTC
GGCCACGAGAAGGGCGCCTTCACCGGTGCCATCACCAGTCGTGCCGGACGCTTCGAGCTGGCCAACGGCGGC
ACCCTGTTCCTCGACGAGATCGGCGACATGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGTGCTGCAGGAG
CGCACCTTCGAAAGGGTCGGCAGCAACAAGACGCAGAACGTCGACGTGCGGATCATCGCCGCGACCCACAAG
AACCTCGAGAAGATGATCGAGGACGGCACTTTCCGCGAAGACCTCTACTACCGCCTCAACGTATTCCCCATC
GAGATGGCGCCGCTGCGCGAGCGGGTGGAAGACATCGCCCTGCTGCTCAACGAACTGATCTCGCGGATGGAG
CACGAGAAGCGCGGGTCGATCCGCTTCAACTCGGCGGCGATCATGTCGCTCTGCCGCCACGACTGGCCGGGC
AACGTCCGCGAACTGGCGAACCTGGTGGAGCGCCTGGCGATCATGCATCCCTACGGGGTGATCGGGGTCGGC
GAACTGCCGAAGAAATTCCGCCATGTCGACGACGAGGACGAGCAACTCGCCAGCAGCCTGCGCGAAGAGCTG
GAAGAGCGCGCGGCGATCAACGCTGGGCTGCCGGGAATGGACGCGCCGGCGATGCTGCCGGCCGAAGGCCTG
GACCTCAAGGACTACCTGGCCAACCTCGAGCAGGGCCTGATCCAGCAGGCCCTCGACGATGCCGGCGGAGTG
GTCGCGCGGGCCGCCGAACGCCTGCGCATCCGCCGCACCACGCTGGTGGAGAAGATGCGCAAGTACGGCATG
AGCCGGCGCGACGACGACCTGTCGGATGATTGA
Translation:
MWRETKLLLIDDNLDRSRDLAVILNFLGEDQLTCNSEDWREVAAGLSNSREALCVLLGSVESKGGAVELLKQ
LASWDEYLPILLIGEPAPADWPEELRRRVLASLEMPPSYNKLLDSLHRAQVYREMYDQARERGRSREPNLFR
SLVGTSRAIQQVRQMMQQVADTDASVLILGESGTGKEVVARNLHYHSKRREGPFVPVNCGAIPAELLESELF
GHEKGAFTGAITSRAGRFELANGGTLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQNVDVRIIAATHK
NLEKMIEDGTFREDLYYRLNVFPIEMAPLRERVEDIALLLNELISRMEHEKRGSIRFNSAAIMSLCRHDWPG
NVRELANLVERLAIMHPYGVIGVGELPKKFRHVDDEDEQLASSLREELEERAAINAGLPGMDAPAMLPAEGL
DLKDYLANLEQGLIQQALDDAGGVVARAAERLRIRRTTLVEKMRKYGMSRRDDDLSDD*
AnnotationID:855GeneID:846
AnnotatorUID: danlee
Modification Date/Time: 2004-05-26 22:10:15
Gene Name:fleQ
Confidence Code:1
GeneProduct:transcriptional regulator FleQ
Cell Localization:()
Synonyms:PA1097
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2204
Secondary Functional Category(ies):Motility & Attachment
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, 
and DNA-binding domains [Signal transduction mechanisms]
             CD-Length = 464 residues,  99.1% aligned
             Score =  445 bits (1145), Expect = 7e-126
pfam00158, Sigma54_activat, Sigma-54 interaction domain. Score: 314, 1e-86






   
Genomic Context:
fleQSR (Pseudomonas aeruginosa) 






   
Comment:


















    ReferenceID:1695




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18837




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32359




  
Author/Investigator(s):
        Arora SK, Ritchings BW, Almira EC, Lory S, Ramphal R.





  
Title:
        A transcriptional activator, FleQ, regulates mucin adhesion and flagellar gene expression in Pseudomonas aeruginosa in a cascade manner.




  
PubMed:
        97431510


MedLine:
        




    
Source:
J Bacteriol. 1997 Sep;179(17):5574-81.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:846
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1520
                           PA1097_tr
                           translation of PA1097
                           490
                           99.99
                           99.99
                           0
                           2493.0
     

     
     
54860
                           gb|AAG04486.1|AE004540_6
                           (AE004540) transcriptional regulator FleQ [Pseudomonas aeruginosa PAO1]
                           490
                           99.99
                           99.99
                           0
                           2493.0
     

     
     
54861
                           gb|AAA99303.1|
                           (L43064) regulatory protein [Pseudomonas aeruginosa]
                           490
                           99.99
                           99.99
                           0
                           2493.0
     

     
     
54862
                           gb|AAC37124.1|
                           (L81176) FleQ [Pseudomonas aeruginosa]
                           490
                           99.59
                           99.59
                           0
                           2482.0
     

     
     
54863
                           emb|CAC69412.1|
                           (AJ308470) fleQ protein [Pseudomonas sp. Y1000]
                           491
                           83.91
                           90.42
                           1
                           2106.0
     

     






      

          
GC ORFID: 43848How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1097Glimmer Score: 

          
Start: 491564Stop: 493036

          
Length: 1473


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1097 translation of PA1097Homolog Bit Score 964.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7914 (ORF: BLASTX 809.0), t_PA2354 (ORF: BLASTX 250.0), psyr_15may02_Scaffold1_revised_gene1290 (ORF: BLASTX 246.0), t_PA4726 (ORF: BLASTX 245.0), psyr_15may02_Scaffold15_revised_gene2516 (ORF: BLASTX 239.0), t_PA2005 (ORF: BLASTX 232.0), t_PA2359 (ORF: BLASTX 219.0), t_PA1097 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTGGCGCGAAACCAAACTCTTGCTGATTGACGACAATCTCGATCGCAGTCGCGACCTGGCAGTCATTCTC 
AACTTCCTCGGCGAAGATCAGCTGACCTGCAACAGCGAGGATTGGCGAGAGGTAGCGGCGGGCCTGAGCAAC 
AGTCGCGAAGCCCTGTGCGTGCTGCTCGGCAGCGTCGAGTCGAAGGGCGGGGCGGTAGAGCTGCTGAAGCAA 
CTGGCCAGTTGGGACGAGTACCTGCCGATCCTGCTGATCGGCGAGCCGGCCCCGGCCGACTGGCCGGAGGAG 
CTGCGCCGCCGGGTGCTCGCCAGCCTGGAGATGCCGCCCAGCTACAACAAGCTGCTCGATTCCCTGCATCGC 
GCCCAGGTCTACCGCGAGATGTACGACCAGGCCCGCGAGCGCGGCCGCTCCCGCGAGCCGAACCTGTTCCGC 
AGCCTGGTCGGCACCAGCCGGGCGATCCAGCAGGTGCGGCAGATGATGCAGCAGGTCGCCGATACCGATGCC 
AGCGTGCTGATCCTCGGCGAGTCCGGCACCGGCAAGGAAGTGGTGGCGCGCAACCTGCATTACCATTCCAAG 
CGCCGCGAGGGGCCCTTCGTCCCGGTGAACTGCGGGGCGATCCCGGCGGAACTGCTGGAAAGCGAACTGTTC 
GGCCACGAGAAGGGCGCCTTCACCGGTGCCATCACCAGTCGTGCCGGACGCTTCGAGCTGGCCAACGGCGGC 
ACCCTGTTCCTCGACGAGATCGGCGACATGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGTGCTGCAGGAG 
CGCACCTTCGAAAGGGTCGGCAGCAACAAGACGCAGAACGTCGACGTGCGGATCATCGCCGCGACCCACAAG 
AACCTCGAGAAGATGATCGAGGACGGCACTTTCCGCGAAGACCTCTACTACCGCCTCAACGTATTCCCCATC 
GAGATGGCGCCGCTGCGCGAGCGGGTGGAAGACATCGCCCTGCTGCTCAACGAACTGATCTCGCGGATGGAG 
CACGAGAAGCGCGGGTCGATCCGCTTCAACTCGGCGGCGATCATGTCGCTCTGCCGCCACGACTGGCCGGGC 
AACGTCCGCGAACTGGCGAACCTGGTGGAGCGCCTGGCGATCATGCATCCCTACGGGGTGATCGGGGTCGGC 
GAACTGCCGAAGAAATTCCGCCATGTCGACGACGAGGACGAGCAACTCGCCAGCAGCCTGCGCGAAGAGCTG 
GAAGAGCGCGCGGCGATCAACGCTGGGCTGCCGGGAATGGACGCGCCGGCGATGCTGCCGGCCGAAGGCCTG 
GACCTCAAGGACTACCTGGCCAACCTCGAGCAGGGCCTGATCCAGCAGGCCCTCGACGATGCCGGCGGAGTG 
GTCGCGCGGGCCGCCGAACGCCTGCGCATCCGCCGCACCACGCTGGTGGAGAAGATGCGCAAGTACGGCATG 
AGCCGGCGCGACGACGACCTGTCGGATGATTGA