ViewGene
Locus Name:
GeneID:
Location:

GeneID:845
TrivialName: PA14_54570
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54570
PAO1 Ortholog Locus:PA0752
Sequence Length:1518
Protein Length:505
Start: 4836582
Stop: 4838099
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04141.1|AE004510_5 (AE004510) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 495/505 (98%), Positives = 500/505 (99%)
Sequence:
ATGGAAACCTTGAACTACCTCGGCCAGGGCTTCGGCGTCGCGATGACCCCGACCAACCTGATCACCGCGCTG
ATCGGCACCCTGATCGGCACTATCGTCGGCCTGCTGCCGGGCCTCGGCCCGATCAACGGCGTCGCGCTGCTG
ATCCCGGTGGCCTTCGCCCTGGGCCTGCCGCCGGAAACCGCGCTGATCCTGCTCGCCGCCGTGTACCTGGGC
TGCGAGTACGGCGGGCGGATCAGCTCGATCCTGCTCAACATCCCCGGCGAAGCCTCGACCGTGATGACCACC
CTCGACGGCTACCCGATGGCACGCAAGGGCCTGGCCGGCGTGGCCCTGTCGCTGTCGGCCTGGAGTTCCTTC
ATCGGCGCCTTCATCGCCACCTGCGGGATGGTCCTGTTCGCCCCGCTGCTGGCCAAGTGGGCGATCGCCTTC
GGTCCGGCGGAATACTTCGTACTGATGGTCTTCGCCATCGTCTGCCTCGGCGGCATGGCCGGCGACAAGCCA
CTGAAGACGCTGCTGGCGGCGTTGCTCGGGCTGTTCCTGTCCTGCGTCGGGATCGACGCCAACAGCGGCGTG
TACCGCTTCACCGGGGACAGCATCCACCTCGCCGACGGCATCCAGTTCGTGGTCCTGGTACTGGGTCTGTTC
TCGGTCAGCGAGATTCTCCTGTTGCTGGAAAAGACCCACCACGGCCAGGAAGCGGTCAAGGCCACCGGGCGG
ATGATGTTCAACTTCAAGGAAGCCGCCAGCGTATTCCTGGTCAACCTGCGCTGCGGCGTGCTCGGCTTCGTC
ATGGGCGTGCTGCCCGGCGCCGGCGCGACCCTGGCCAGCGCCGTGGCCTACATGACCGAGAAGAAGCTGGCC
GGCGCCAAGGGCGAGTTCGGCAAGGGCGACATGCGTGGCCTCGCCGCCCCGGAGACCGCCATTGGCGGCGCG
GCCTGCGGCGCCATGGTGCCGATGCTGACCCTCGGCGTGCCCGGCTCGGGCACCACCGCGGTGATGATCGGC
GCCCTGACCCTGTACAACATCACTCCCGGCCCGCTGCTGTTCCAGCAGCAACCGGACATCGTCTGGGGCCTG
ATCGCCTCGCTGTTCATCGCCAACGTCATGCTGATCATCCTCAACGTGCCGATGGTCCGTGTGTTCACCCGC
ATCCTCGCGGTGCCGAACTGGGCCCTGGTGCCGGCCATCGCGATCATCACCGGGATCGGCGTGTACGGCGTG
CACGCGACTACCTTCGACCTGTTCCTGATGGTCGGCATCGGCGTGCTCGGCTACATCCTGCGCAAGCTCGAC
TTCCCGCTCTCGCCGCTGCTGCTGGGCTTCATCCTCGGCGGGCTGATGGAACAGAACCTGCGCCGCGCGCTG
TCGATCTCCAACGGCGAACTGGGCATCCTCTGGTCGAGCCCGATCAGCCTGGTGACCTGGGCCCTGGTGGTG
GTGATGCTGCTGTTGCCGCTGGTCCGCGCCTGGCGCCGCCGCGCGGCCCGTCGCACGACAGGGCTGGCCGAT
GCCTGA
Translation:
METLNYLGQGFGVAMTPTNLITALIGTLIGTIVGLLPGLGPINGVALLIPVAFALGLPPETALILLAAVYLG
CEYGGRISSILLNIPGEASTVMTTLDGYPMARKGLAGVALSLSAWSSFIGAFIATCGMVLFAPLLAKWAIAF
GPAEYFVLMVFAIVCLGGMAGDKPLKTLLAALLGLFLSCVGIDANSGVYRFTGDSIHLADGIQFVVLVLGLF
SVSEILLLLEKTHHGQEAVKATGRMMFNFKEAASVFLVNLRCGVLGFVMGVLPGAGATLASAVAYMTEKKLA
GAKGEFGKGDMRGLAAPETAIGGAACGAMVPMLTLGVPGSGTTAVMIGALTLYNITPGPLLFQQQPDIVWGL
IASLFIANVMLIILNVPMVRVFTRILAVPNWALVPAIAIITGIGVYGVHATTFDLFLMVGIGVLGYILRKLD
FPLSPLLLGFILGGLMEQNLRRALSISNGELGILWSSPISLVTWALVVVMLLLPLVRAWRRRAARRTTGLAD
A*
AnnotationID:854GeneID:845
AnnotatorUID: danlee
Modification Date/Time: 2004-04-14 12:12:37
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0752
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3333, pfam01970
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3333, Uncharacterized protein conserved in bacteria. Score: 584, 3e-167
pfam01970, DUF112, Integral membrane protein DUF112.  Score: 383, 7e-107






   
Genomic Context:






   
Comment:


















    ReferenceID:1693




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18835




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:845
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1519
                           PA0752_tr
                           translation of PA0752
                           505
                           98.01
                           99.00
                           0
                           2493.0
     

     
     
54818
                           gb|AAG04141.1|AE004510_5
                           (AE004510) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           505
                           98.01
                           99.00
                           0
                           2493.0
     

     
     
54819
                           gb|AAN67038.1|AE016332_8
                           (AE016779) tricarboxylate transport protein TctA, putative [Pseudomonas putida KT2440]
                           505
                           87.72
                           95.64
                           1
                           2310.0
     

     
     
54820
                           gb|AAO57690.1|
                           (AE016871) membrane protein TctA, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           508
                           86.41
                           94.09
                           7
                           2286.0
     

     
     
54822
                           gb|AAL21673.1|
                           (AE008827) tricarboxylic transport protein [Salmonella typhimurium LT2]
                           506
                           65.41
                           81.42
                           3
                           1753.0
     

     






      

          
GC ORFID: 43847How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0752Glimmer Score: 

          
Start: 117325Stop: 115808

          
Length: 1518


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0752 translation of PA0752Homolog Bit Score 964.0

          
Other Homologs:  psyr_15may02_Scaffold16_revised_gene2601 (ORF: BLASTX 885.0), t_PA0752 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAAACCTTGAACTACCTCGGCCAGGGCTTCGGCGTCGCGATGACCCCGACCAACCTGATCACCGCGCTG 
ATCGGCACCCTGATCGGCACTATCGTCGGCCTGCTGCCGGGCCTCGGCCCGATCAACGGCGTCGCGCTGCTG 
ATCCCGGTGGCCTTCGCCCTGGGCCTGCCGCCGGAAACCGCGCTGATCCTGCTCGCCGCCGTGTACCTGGGC 
TGCGAGTACGGCGGGCGGATCAGCTCGATCCTGCTCAACATCCCCGGCGAAGCCTCGACCGTGATGACCACC 
CTCGACGGCTACCCGATGGCACGCAAGGGCCTGGCCGGCGTGGCCCTGTCGCTGTCGGCCTGGAGTTCCTTC 
ATCGGCGCCTTCATCGCCACCTGCGGGATGGTCCTGTTCGCCCCGCTGCTGGCCAAGTGGGCGATCGCCTTC 
GGTCCGGCGGAATACTTCGTACTGATGGTCTTCGCCATCGTCTGCCTCGGCGGCATGGCCGGCGACAAGCCA 
CTGAAGACGCTGCTGGCGGCGTTGCTCGGGCTGTTCCTGTCCTGCGTCGGGATCGACGCCAACAGCGGCGTG 
TACCGCTTCACCGGGGACAGCATCCACCTCGCCGACGGCATCCAGTTCGTGGTCCTGGTACTGGGTCTGTTC 
TCGGTCAGCGAGATTCTCCTGTTGCTGGAAAAGACCCACCACGGCCAGGAAGCGGTCAAGGCCACCGGGCGG 
ATGATGTTCAACTTCAAGGAAGCCGCCAGCGTATTCCTGGTCAACCTGCGCTGCGGCGTGCTCGGCTTCGTC 
ATGGGCGTGCTGCCCGGCGCCGGCGCGACCCTGGCCAGCGCCGTGGCCTACATGACCGAGAAGAAGCTGGCC 
GGCGCCAAGGGCGAGTTCGGCAAGGGCGACATGCGTGGCCTCGCCGCCCCGGAGACCGCCATTGGCGGCGCG 
GCCTGCGGCGCCATGGTGCCGATGCTGACCCTCGGCGTGCCCGGCTCGGGCACCACCGCGGTGATGATCGGC 
GCCCTGACCCTGTACAACATCACTCCCGGCCCGCTGCTGTTCCAGCAGCAACCGGACATCGTCTGGGGCCTG 
ATCGCCTCGCTGTTCATCGCCAACGTCATGCTGATCATCCTCAACGTGCCGATGGTCCGTGTGTTCACCCGC 
ATCCTCGCGGTGCCGAACTGGGCCCTGGTGCCGGCCATCGCGATCATCACCGGGATCGGCGTGTACGGCGTG 
CACGCGACTACCTTCGACCTGTTCCTGATGGTCGGCATCGGCGTGCTCGGCTACATCCTGCGCAAGCTCGAC 
TTCCCGCTCTCGCCGCTGCTGCTGGGCTTCATCCTCGGCGGGCTGATGGAACAGAACCTGCGCCGCGCGCTG 
TCGATCTCCAACGGCGAACTGGGCATCCTCTGGTCGAGCCCGATCAGCCTGGTGACCTGGGCCCTGGTGGTG 
GTGATGCTGCTGTTGCCGCTGGTCCGCGCCTGGCGCCGCCGCGCGGCCCGTCGCACGACAGGGCTGGCCGAT 
GCCTGA