ViewGene
Locus Name:
GeneID:
Location:

GeneID:844
TrivialName: PA14_04870
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04870
PAO1 Ortholog Locus:PA0371
Sequence Length:1488
Protein Length:495
Start: 430764
Stop: 429277
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03760.1|AE004475_2 (AE004475) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 492/495 (99%), Positives = 493/495 (99%)
Sequence:
ATGAGTGAGCGCACAGGGCTGCGTTATGGCCTGCTCGGCCTGATCGTCATCGCGTTGCTGGCCGCGCTGGCC
TATTTCGTCGCGCGTCCCCCCCAGACCCCGGCGGCGGCCCATGCCGCGGCGGTCGAGGAAAACCAGTTGCAG
TCGCTGAAGGACGTCGCCAAGCAGGCGCCGGTCCATCGCAAGCTGGACATCCAGGAATGGAAGACCGCCGAA
GGTGCCAAGGTGCTGTTCGTCGAAGCCCATGAACTGCCGATGTTCGACCTGCGCCTGACCTTCGCCGCCGGC
AGCAGCCAGGACGCCGGCACCCCCGGCCTGTCGATGCTGACCAACGCCATGCTCAACGAAGGCGTGCCAGGC
AAGGACACCACTGCCATCGCCGCCGGCTTCGAGGACCTCGGCGCCTCGTTCAGCAACGGTTCCTACCGCGAC
ATGGCGGTGGCCGGCCTGCGCAGCCTGTCCGACGCCGACAAGCGGACCCAGGCGCTGAAGCTGTTCGAACAG
GTGATCGGCCAGCCGACCTTCCCCGAGGACGCCCTGGCACGCATCAAGAACCAGGTCCTGGCCGGTTTCGAG
TACCAGAAGCAGAACCCCGGCAAGCTGGCCGGGCTGGAGCTGTTCAAGCGCCTCTATGGCGAGCATCCCTAC
GCGCACTCCAGCGACGGCGACGAAAAGTCCGTTCCACCGATCAGCCGCGAACAATTGCAGGCGTTCCACAAG
AAAGCCTACGCCGCCGGCAACGTGGTCATCGCGCTGGTCGGCGACCTCTCGCGGCAGGAGGCCGAAGCGATC
GCCGCGGAAGTCTCCAAGGCGCTGCCCCAGGGCCCGGCGCTGGCCAAGACCGCCCAGCCGGAAACGCCCAAG
CCCGGCCTGACGCACATCGACTTCCCCTCCGAGCAGACCCACCTGATGCTCGCCCAGCTTGGCATCGACCGC
CAGGATCCCGACTACGCGGCGCTCTACCTGGGCAACCAGATCCTCGGCGGCGGCGGCTTCGGCACCCGCCTG
ATGGACCAGGTGCGAGAAAAGCGCGGCCTGACCTACGGCATCTATTCCGGCTTCACCGCCATGCAGGCACGC
GGTCCGTTCATGATCAACTTCCAGACCCGCGCCGAACTCAGCGAAGGTGCGCTGAAGCTGGTCCAGGACATC
GTCCGCGACTACCTGGCCAACGGCCCGACCCAGAAGGAACTGGACGACGCCAAGCGCGAACTGGCCGGCAGC
TTCCCGCTGTCCACCGCGAGCAACGCCGACATCGTCGGCCAGCTCGGCGCCATCGGTTTCTACGGCCTGCCG
CTGGACTACCTGGAAAGCTTCCTCAAGCAGGTCGAGGGACTCAGCGTCGAACAGGTCAGGACCGCCATGGCC
AAGCACCTGGACGCCGACGCCTTCGTCATCGTCAGCGCCGGCCCGAGCGTGCCGCAGAAACCCCTGCCGCCA
CCCACCGCCAAGCCGGCCCAGCAACCCAGCGGCGTTCCGGAGCATTGA
Translation:
MSERTGLRYGLLGLIVIALLAALAYFVARPPQTPAAAHAAAVEENQLQSLKDVAKQAPVHRKLDIQEWKTAE
GAKVLFVEAHELPMFDLRLTFAAGSSQDAGTPGLSMLTNAMLNEGVPGKDTTAIAAGFEDLGASFSNGSYRD
MAVAGLRSLSDADKRTQALKLFEQVIGQPTFPEDALARIKNQVLAGFEYQKQNPGKLAGLELFKRLYGEHPY
AHSSDGDEKSVPPISREQLQAFHKKAYAAGNVVIALVGDLSRQEAEAIAAEVSKALPQGPALAKTAQPETPK
PGLTHIDFPSEQTHLMLAQLGIDRQDPDYAALYLGNQILGGGGFGTRLMDQVREKRGLTYGIYSGFTAMQAR
GPFMINFQTRAELSEGALKLVQDIVRDYLANGPTQKELDDAKRELAGSFPLSTASNADIVGQLGAIGFYGLP
LDYLESFLKQVEGLSVEQVRTAMAKHLDADAFVIVSAGPSVPQKPLPPPTAKPAQQPSGVPEH*
AnnotationID:853GeneID:844
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 06:06:42
Gene Name:
Confidence Code:3
GeneProduct:putative peptidase
Cell Localization:()
Synonyms:PA0371
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0612,pfam05193
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0612, PqqL, Predicted Zn-dependent peptidases
CD-Length = 438 residues,  98.4% aligned
Score =  258 bits (660), Expect = 1e-69
Identities = 129/433 (29%), Positives = 191/433 (44%), Gaps = 11/433 (2%)

pfam05193, Peptidase M16 inactive domain.
CD-Length = 181 residues, 100.0% aligned
Score =  115 bits (289), Expect = 1e-26
Identities = 58/182 (31%), Positives = 88/182 (48%), Gaps = 6/182 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1691




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18833




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33704




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:844_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:844
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1518
                           PA0371_tr
                           translation of PA0371
                           495
                           99.39
                           99.59
                           0
                           2495.0
     

     
     
54813
                           gb|AAG03760.1|AE004475_2
                           (AE004475) hypothetical protein PA0371 [Pseudomonas aeruginosa PAO1]
                           495
                           99.39
                           99.59
                           0
                           2495.0
     

     
     
54814
                           gb|AAN70678.1|AE016711_6
                           (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440]
                           498
                           70.88
                           79.11
                           5
                           1743.0
     

     
     
54815
                           gb|AAO53969.1|
                           (AE016857) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           501
                           65.66
                           77.24
                           10
                           1651.0
     

     
     
54817
                           emb|CAD84881.1|
                           (BX321859) Insulinase family (Peptidase family M16) [Nitrosomonas europaea ATCC 19718]
                           501
                           35.72
                           51.09
                           73
                           790.0
     

     






      

          
GC ORFID: 43846How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0371Glimmer Score: 

          
Start: 6232106Stop: 6230619

          
Length: 1488


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0371 translation of PA0371Homolog Bit Score 965.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6821 (ORF: BLASTX 656.0), t_PA0371 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTGAGCGCACAGGGCTGCGTTATGGCCTGCTCGGCCTGATCGTCATCGCGTTGCTGGCCGCGCTGGCC 
TATTTCGTCGCGCGTCCCCCCCAGACCCCGGCGGCGGCCCATGCCGCGGCGGTCGAGGAAAACCAGTTGCAG 
TCGCTGAAGGACGTCGCCAAGCAGGCGCCGGTCCATCGCAAGCTGGACATCCAGGAATGGAAGACCGCCGAA 
GGTGCCAAGGTGCTGTTCGTCGAAGCCCATGAACTGCCGATGTTCGACCTGCGCCTGACCTTCGCCGCCGGC 
AGCAGCCAGGACGCCGGCACCCCCGGCCTGTCGATGCTGACCAACGCCATGCTCAACGAAGGCGTGCCAGGC 
AAGGACACCACTGCCATCGCCGCCGGCTTCGAGGACCTCGGCGCCTCGTTCAGCAACGGTTCCTACCGCGAC 
ATGGCGGTGGCCGGCCTGCGCAGCCTGTCCGACGCCGACAAGCGGACCCAGGCGCTGAAGCTGTTCGAACAG 
GTGATCGGCCAGCCGACCTTCCCCGAGGACGCCCTGGCACGCATCAAGAACCAGGTCCTGGCCGGTTTCGAG 
TACCAGAAGCAGAACCCCGGCAAGCTGGCCGGGCTGGAGCTGTTCAAGCGCCTCTATGGCGAGCATCCCTAC 
GCGCACTCCAGCGACGGCGACGAAAAGTCCGTTCCACCGATCAGCCGCGAACAATTGCAGGCGTTCCACAAG 
AAAGCCTACGCCGCCGGCAACGTGGTCATCGCGCTGGTCGGCGACCTCTCGCGGCAGGAGGCCGAAGCGATC 
GCCGCGGAAGTCTCCAAGGCGCTGCCCCAGGGCCCGGCGCTGGCCAAGACCGCCCAGCCGGAAACGCCCAAG 
CCCGGCCTGACGCACATCGACTTCCCCTCCGAGCAGACCCACCTGATGCTCGCCCAGCTTGGCATCGACCGC 
CAGGATCCCGACTACGCGGCGCTCTACCTGGGCAACCAGATCCTCGGCGGCGGCGGCTTCGGCACCCGCCTG 
ATGGACCAGGTGCGAGAAAAGCGCGGCCTGACCTACGGCATCTATTCCGGCTTCACCGCCATGCAGGCACGC 
GGTCCGTTCATGATCAACTTCCAGACCCGCGCCGAACTCAGCGAAGGTGCGCTGAAGCTGGTCCAGGACATC 
GTCCGCGACTACCTGGCCAACGGCCCGACCCAGAAGGAACTGGACGACGCCAAGCGCGAACTGGCCGGCAGC 
TTCCCGCTGTCCACCGCGAGCAACGCCGACATCGTCGGCCAGCTCGGCGCCATCGGTTTCTACGGCCTGCCG 
CTGGACTACCTGGAAAGCTTCCTCAAGCAGGTCGAGGGACTCAGCGTCGAACAGGTCAGGACCGCCATGGCC 
AAGCACCTGGACGCCGACGCCTTCGTCATCGTCAGCGCCGGCCCGAGCGTGCCGCAGAAACCCCTGCCGCCA 
CCCACCGCCAAGCCGGCCCAGCAACCCAGCGGCGTTCCGGAGCATTGA