ViewGene

Locus Name:
GeneID:
Location:

GeneID: 843

TrivialName: PA14_66140

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_66140

PAO1 Ortholog Locus: PA5002

Sequence Length: 1419

Protein Length: 472

Start: 5892423

Stop: 5891005

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG08387.1|AE004913_2 (AE004913) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 469/472 (99%), Positives = 470/472 (99%)

Sequence:

ATGAGCGCACGCAAGCAGCAGTTGCTCAAGCGTCATCGACGCAACAAGCGGATCGGCCTACTGGTTGCGCTG
CTGGCATTGCTGGCCGTCGGTCTGCTGGTCAGTCCCTGGTTGTTGCCGATCCTCCTCGTGGCCCTGTGGGTC
GCCCACGAAGCCTGGTTCGCCGATCACCTGTTCTATTCGCCGGGCGAGGACTACCGCTACCGTTTCGCGGAA
GGGGTCGAGTCGCTGCCGGTACGCCTGGCGGATGGCCGTCTGCGAGTCGACGGCGAGCTGCGCGAAGGCGAT
ACGCTGGTGCTTGGCATCGGCGTGCGCGCTGGCTGGCTGGGGCGTTTCCTCGAACCCTCGGTACTGCTGGAA
GGTGGCGCGGAGGCCGATGCCCAGGCTTTCGAACGTGGGGTGAACGGCTTGCGCTACCTGAACCTGACGGGA
CTGGCCGGGCCGCTGGGCGAGGGCCGGATTCGCCTGCGCGGCCGGCATTGCCGGTTGGTCGGCGAACCGACC
CTGTGGCGTGCGCGCCATCCCGATTACCGTGAGCGGCGGGTGATGGTCATCGCTCCGCATGCCGACGACGCC
GAGCTGGCCGCCTTCGGCCTCTACAGCCAGGCACGCGAGGCCTGGATCGTGACCCTGACCGCCGGCGAGATC
GAAACCGAGCATTACCGCCGCATGGGCCTCGACGGAATAGCTGCGGCGCGCCTGAAGGGCCGCCTGCGCGCC
TGGGATAGCCAGGCCGTGCCGGCGTGGGGTGGGGTGCCGGCCGAGCGCTGCGTGCAACTGGGTTATTTCTGC
CTGCAATTGCCTGCCATGCAGGCGAACCCGGGCGAGGTGGTACCGTCCCGTGAGGCCGATCTCGCCGATATC
CGTCCGTTCCGCCAGTTCAACCGTCTGCGCCTGGCCAGCGATACCGACGGCCTGTCGACCTGGAACAATCTG
CTGGCCGATCTCCGCGAGCTGATCCTGCTGGCACGTCCCGAGGTCATCGTCCTGCCTCATCCGCATTTCGAT
CCGCACCCGGACCATGTCCGCGCCCAGGAGGCCGTGCGCGAGGCGCTCCAGGGTCTGGACTGGCAGCCGCAG
GCATTGTTGCACTATGCCAATCACCTGCACGACAACGATCGCTGGCCGATGGGCGATGCGCACATGGGGGTC
AGCCTGCCGCCGTTGACCGAAGAATGCTCGCCGTTGCTGCCATGGACGCTGGCGCTGGAGCGCACGCGCCAG
GTGGACAAGGCCATGGCCTTGGGCATGATGCACGACCTGCAACCCAGGCCGCCGTTCAAGCGCCGTCTGCGC
CGCCGTCTGCAGGGCTGGCTCGCCGGTCGTCGCTGGCCGGCATACGGCGAGGACGAGTTCATGCGCAAGGCG
GTGCGTCGGCACGAGTTGTTCTGGGTGGAGTCGCTGGATGGGGAGGCGTGA

Translation:

MSARKQQLLKRHRRNKRIGLLVALLALLAVGLLVSPWLLPILLVALWVAHEAWFADHLFYSPGEDYRYRFAE
GVESLPVRLADGRLRVDGELREGDTLVLGIGVRAGWLGRFLEPSVLLEGGAEADAQAFERGVNGLRYLNLTG
LAGPLGEGRIRLRGRHCRLVGEPTLWRARHPDYRERRVMVIAPHADDAELAAFGLYSQAREAWIVTLTAGEI
ETEHYRRMGLDGIAAARLKGRLRAWDSQAVPAWGGVPAERCVQLGYFCLQLPAMQANPGEVVPSREADLADI
RPFRQFNRLRLASDTDGLSTWNNLLADLRELILLARPEVIVLPHPHFDPHPDHVRAQEAVREALQGLDWQPQ
ALLHYANHLHDNDRWPMGDAHMGVSLPPLTEECSPLLPWTLALERTRQVDKAMALGMMHDLQPRPPFKRRLR
RRLQGWLAGRRWPAYGEDEFMRKAVRRHELFWVESLDGEA*

AnnotationID:852 GeneID:843

AnnotatorUID: diggins

Modification Date/Time: 2005-03-14 09:09:04

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA5002

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:1689

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:18831

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:35046

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 843_cdd.html

URL:

Homologs By Global Alignment

Gene ID:843

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

1517 PA5002_tr translation of PA5002 472 99.36 99.57 0 2495.0

54810 gb|AAG08387.1|AE004913_2 (AE004913) hypothetical protein PA5002 [Pseudomonas aeruginosa PAO1] 472 99.36 99.57 0 2495.0

54812 gb|AAN70508.1|AE016692_7 (AE016792) conserved hypothetical protein [Pseudomonas putida KT2440] 473 65.11 75.47 7 1599.0

54811 gb|AAO58417.1| (AE016874) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 482 64.52 74.48 14 1600.0

GC ORFID: `43845`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA5002`	Glimmer Score:
Start: `5156106`	Stop: `5154688`
Length: `1419`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA5002 translation of PA5002`	Homolog Bit Score `965.0`
Other Homologs: `t_PA5002 (ORF: GLIMMER)`
GC ORF Sequence
ATGAGCGCACGCAAGCAGCAGTTGCTCAAGCGTCATCGACGCAACAAGCGGATCGGCCTACTGGTTGCGCTG CTGGCATTGCTGGCCGTCGGTCTGCTGGTCAGTCCCTGGTTGTTGCCGATCCTCCTCGTGGCCCTGTGGGTC GCCCACGAAGCCTGGTTCGCCGATCACCTGTTCTATTCGCCGGGCGAGGACTACCGCTACCGTTTCGCGGAA GGGGTCGAGTCGCTGCCGGTACGCCTGGCGGATGGCCGTCTGCGAGTCGACGGCGAGCTGCGCGAAGGCGAT ACGCTGGTGCTTGGCATCGGCGTGCGCGCTGGCTGGCTGGGGCGTTTCCTCGAACCCTCGGTACTGCTGGAA GGTGGCGCGGAGGCCGATGCCCAGGCTTTCGAACGTGGGGTGAACGGCTTGCGCTACCTGAACCTGACGGGA CTGGCCGGGCCGCTGGGCGAGGGCCGGATTCGCCTGCGCGGCCGGCATTGCCGGTTGGTCGGCGAACCGACC CTGTGGCGTGCGCGCCATCCCGATTACCGTGAGCGGCGGGTGATGGTCATCGCTCCGCATGCCGACGACGCC GAGCTGGCCGCCTTCGGCCTCTACAGCCAGGCACGCGAGGCCTGGATCGTGACCCTGACCGCCGGCGAGATC GAAACCGAGCATTACCGCCGCATGGGCCTCGACGGAATAGCTGCGGCGCGCCTGAAGGGCCGCCTGCGCGCC TGGGATAGCCAGGCCGTGCCGGCGTGGGGTGGGGTGCCGGCCGAGCGCTGCGTGCAACTGGGTTATTTCTGC CTGCAATTGCCTGCCATGCAGGCGAACCCGGGCGAGGTGGTACCGTCCCGTGAGGCCGATCTCGCCGATATC CGTCCGTTCCGCCAGTTCAACCGTCTGCGCCTGGCCAGCGATACCGACGGCCTGTCGACCTGGAACAATCTG CTGGCCGATCTCCGCGAGCTGATCCTGCTGGCACGTCCCGAGGTCATCGTCCTGCCTCATCCGCATTTCGAT CCGCACCCGGACCATGTCCGCGCCCAGGAGGCCGTGCGCGAGGCGCTCCAGGGTCTGGACTGGCAGCCGCAG GCATTGTTGCACTATGCCAATCACCTGCACGACAACGATCGCTGGCCGATGGGCGATGCGCACATGGGGGTC AGCCTGCCGCCGTTGACCGAAGAATGCTCGCCGTTGCTGCCATGGACGCTGGCGCTGGAGCGCACGCGCCAG GTGGACAAGGCCATGGCCTTGGGCATGATGCACGACCTGCAACCCAGGCCGCCGTTCAAGCGCCGTCTGCGC CGCCGTCTGCAGGGCTGGCTCGCCGGTCGTCGCTGGCCGGCATACGGCGAGGACGAGTTCATGCGCAAGGCG GTGCGTCGGCACGAGTTGTTCTGGGTGGAGTCGCTGGATGGGGAGGCGTGA