ViewGene
Locus Name:
GeneID:
Location:

GeneID:842
TrivialName: PA14_59220
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59220
PAO1 Ortholog Locus:PA0985
Sequence Length:1497
Protein Length:498
Start: 5275324
Stop: 5276820
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84213.1| (AY273869) pyocin S5 [Pseudomonas aeruginosa]
Identities = 498/498 (100%), Positives = 498/498 (100%)
Sequence:
ATGTCCAATGACAACGAAGTACCTGGTTCCATGGTTATTGTCGCACAAGGTCCAGACGATCAATACGCATAC
GAGGTTCCCCCTATCGATAGCGCGGCCGTTGCCGGGAATATGTTTGGCGACTTGATTCAAAGAGACATATAT
CTACAGAAAAACATTTATTATCCAGTCCGATCCATTGTTGAACAAGGAACAAAAGAAAAGAAGGAGATCAAC
AAGAAAGTATCTGATCAAGTCGATGGCTTGCTAAAGCAGATCACTCAAGGAAAAAGGGAGGCCACAAGGCAA
GAGCGAGTCGATGTCATGTCGGCAGTCCTGCACAAGATGGAATCTGATCTTGAAGGATACAAAAAGACCTTT
ACCAAAGGCCCATTCATTGACTACGAAAAGCAGTCAAGCCTCTCCATCTATGAGGCCTGGGTCAAGATCTGG
GAGAAGAACTCTTGGGAAGAAAGAAAGAAGTACCCTTTTCAGCAGCTTGTTAGAGATGAACTGGAGCGGGCG
GTTGCCTACTACAAACAAGATTCACTCTCTGAAGCGGTAAAAGTGCTAAGACAGGAGCTCAACAAGCAAAAA
GCGCTAAAGGAAAAAGAGGACCTCTCTCAACTGGAGCGGGACTACAAAACCAGAAAGGCGAATCTCGAGATG
AAAGTACAATCCGAGCTTGATCAAGCGGGAAGTGCTTTGCCTCCATTGGTCAGTCCAACGCCAGAGCAATGG
CTTGAACGTGCCACAAGACTGGTTACGCAAGCAATTGCTGATAAAAAGCAGCTGCAGACCACAAACAATACT
CTTATCAAGAATGCCCCAACCCCTCTAGAAAAGCAGAAAGCCATCTACAATGGTGAGCTACTTGTGGATGAG
ATAGCCAGTCTACAGACCCGCTTAGATAAGCTGAACGCCGAAACGACACGACGCAGGACAGAAGCAGAACGC
AAGGCGGCCGAGGAACAAGCGTTGCAAGATGCTGTTAAATTTACTGCCGACTTTTATAAGGAAGTAACTGAG
AAATTTGGCGCACGAACATCAGAGATGGCGCACCAACTGGCCGAAGGCGCCAGGGGGAAAAATATCAGGAGT
TCGGCGGAAGCAATCAATTCGTTTGAAAAACACAAGGATGCGTTAAATAAAAAACTTAGCCTTAAAGATAGG
CAAGCCATTGCCAAAGCCTTTGATTCTCTAGACAAGCAGATGATGGCGAAGAGCCTTGAGAAATTTAGCAAA
GGCTTTGGAGTTGTAGGCAAAGCTATTGACGCCGCCAGCCTGTACCAAGAGTTCAAGATATCTACGGAAACC
GGGGACTGGAAACCATTCTTTGTAAAAGTTGAAACACTAGCTGCTGGTGCGGCCGCCAGTTGGCTTGTGGGT
ATTGCATTTGCCACGGCAACGGCCACTCCTATAGGCATCCTGGGGTTCGCACTGGTAATGGCAGTTACCGGG
GCGATGATTGACGAAGGCCTTCTAGAAAAAGCAAACAACCTTGTAATGTCCATTTAA
Translation:
MSNDNEVPGSMVIVAQGPDDQYAYEVPPIDSAAVAGNMFGDLIQRDIYLQKNIYYPVRSIVEQGTKEKKEIN
KKVSDQVDGLLKQITQGKREATRQERVDVMSAVLHKMESDLEGYKKTFTKGPFIDYEKQSSLSIYEAWVKIW
EKNSWEERKKYPFQQLVRDELERAVAYYKQDSLSEAVKVLRQELNKQKALKEKEDLSQLERDYKTRKANLEM
KVQSELDQAGSALPPLVSPTPEQWLERATRLVTQAIADKKQLQTTNNTLIKNAPTPLEKQKAIYNGELLVDE
IASLQTRLDKLNAETTRRRTEAERKAAEEQALQDAVKFTADFYKEVTEKFGARTSEMAHQLAEGARGKNIRS
SAEAINSFEKHKDALNKKLSLKDRQAIAKAFDSLDKQMMAKSLEKFSKGFGVVGKAIDAASLYQEFKISTET
GDWKPFFVKVETLAAGAAASWLVGIAFATATATPIGILGFALVMAVTGAMIDEGLLEKANNLVMSI*
AnnotationID:851GeneID:842
AnnotatorUID: diggins
Modification Date/Time: 2006-01-20 06:06:19
Gene Name:
Confidence Code:3
GeneProduct:pyocin S5
Cell Localization:()
Synonyms:PA0985
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(23) Secreted Factors (toxins, enzymes, alginate)
Alternate Gene Product Name:colicin-like toxin
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN76843.1|AF453414_1 (AF453414) colicin Ib [Escherichia fergusonii]
          Length = 626

 Score =  171 bits (433), Expect = 1e-41
 Identities = 80/195 (41%), Positives = 134/195 (68%)

>emb|CAA25505.1| (X01009) colicin Ib [Escherichia coli]
          Length = 626

 Score =  170 bits (431), Expect = 2e-41
 Identities = 79/195 (40%), Positives = 136/195 (69%)








 
Structural Features:
>gnl|CDD|1575 pfam01024, Colicin, Colicin pore forming domain
          Length = 187

 Score =  171 bits (434), Expect = 4e-43
 Identities = 71/187 (37%), Positives = 117/187 (62%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1687




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18829




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:842
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
54792
                           gb|AAP84213.1|
                           (AY273869) pyocin S5 [Pseudomonas aeruginosa]
                           498
                           99.99
                           99.99
                           0
                           2496.0
     

     
     
1515
                           PA0985_tr
                           translation of PA0985
                           498
                           97.59
                           98.79
                           0
                           2440.0
     

     
     
54793
                           gb|AAG04374.1|AE004531_11
                           (AE004531) pyocin S5 [Pseudomonas aeruginosa PAO1]
                           498
                           97.59
                           98.79
                           0
                           2440.0
     

     
     
54802
                           gb|AAA23182.2|
                           (M13819) colicin Ia structural protein [Plasmid ColIa]
                           657
                           25.41
                           41.70
                           190
                           479.0
     

     
     
54803
                           gb|AAA59398.1|
                           (U15623) colicin protein [Escherichia coli]
                           657
                           25.41
                           41.70
                           190
                           479.0
     

     






      

          
GC ORFID: 43844How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL088Glimmer Score: 

          
Start: 4539003Stop: 4540499

          
Length: 1497


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_RL088 498 Homolog: PA0985 / Colicin-like toxin / Pathogenicity-related / P.aeruginosa / PA01 (AAG04374) translation of RL088Homolog Bit Score 966.0

          
Other Homologs:  t_PA0985 (ORF: BLASTX 944.0), t_RL088 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCAATGACAACGAAGTACCTGGTTCCATGGTTATTGTCGCACAAGGTCCAGACGATCAATACGCATAC 
GAGGTTCCCCCTATCGATAGCGCGGCCGTTGCCGGGAATATGTTTGGCGACTTGATTCAAAGAGACATATAT 
CTACAGAAAAACATTTATTATCCAGTCCGATCCATTGTTGAACAAGGAACAAAAGAAAAGAAGGAGATCAAC 
AAGAAAGTATCTGATCAAGTCGATGGCTTGCTAAAGCAGATCACTCAAGGAAAAAGGGAGGCCACAAGGCAA 
GAGCGAGTCGATGTCATGTCGGCAGTCCTGCACAAGATGGAATCTGATCTTGAAGGATACAAAAAGACCTTT 
ACCAAAGGCCCATTCATTGACTACGAAAAGCAGTCAAGCCTCTCCATCTATGAGGCCTGGGTCAAGATCTGG 
GAGAAGAACTCTTGGGAAGAAAGAAAGAAGTACCCTTTTCAGCAGCTTGTTAGAGATGAACTGGAGCGGGCG 
GTTGCCTACTACAAACAAGATTCACTCTCTGAAGCGGTAAAAGTGCTAAGACAGGAGCTCAACAAGCAAAAA 
GCGCTAAAGGAAAAAGAGGACCTCTCTCAACTGGAGCGGGACTACAAAACCAGAAAGGCGAATCTCGAGATG 
AAAGTACAATCCGAGCTTGATCAAGCGGGAAGTGCTTTGCCTCCATTGGTCAGTCCAACGCCAGAGCAATGG 
CTTGAACGTGCCACAAGACTGGTTACGCAAGCAATTGCTGATAAAAAGCAGCTGCAGACCACAAACAATACT 
CTTATCAAGAATGCCCCAACCCCTCTAGAAAAGCAGAAAGCCATCTACAATGGTGAGCTACTTGTGGATGAG 
ATAGCCAGTCTACAGACCCGCTTAGATAAGCTGAACGCCGAAACGACACGACGCAGGACAGAAGCAGAACGC 
AAGGCGGCCGAGGAACAAGCGTTGCAAGATGCTGTTAAATTTACTGCCGACTTTTATAAGGAAGTAACTGAG 
AAATTTGGCGCACGAACATCAGAGATGGCGCACCAACTGGCCGAAGGCGCCAGGGGGAAAAATATCAGGAGT 
TCGGCGGAAGCAATCAATTCGTTTGAAAAACACAAGGATGCGTTAAATAAAAAACTTAGCCTTAAAGATAGG 
CAAGCCATTGCCAAAGCCTTTGATTCTCTAGACAAGCAGATGATGGCGAAGAGCCTTGAGAAATTTAGCAAA 
GGCTTTGGAGTTGTAGGCAAAGCTATTGACGCCGCCAGCCTGTACCAAGAGTTCAAGATATCTACGGAAACC 
GGGGACTGGAAACCATTCTTTGTAAAAGTTGAAACACTAGCTGCTGGTGCGGCCGCCAGTTGGCTTGTGGGT 
ATTGCATTTGCCACGGCAACGGCCACTCCTATAGGCATCCTGGGGTTCGCACTGGTAATGGCAGTTACCGGG 
GCGATGATTGACGAAGGCCTTCTAGAAAAAGCAAACAACCTTGTAATGTCCATTTAA